Wall clock time and date at job start Wed Apr 1 2020 02:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48498 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47403 * 300.00171 * 3 2 1 6 6 H 1.48509 * 109.46868 * 60.00224 * 3 2 1 7 7 C 1.38814 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99698 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99936 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47237 * 185.41861 * 10 9 7 12 12 H 1.09000 * 109.70362 * 47.98994 * 11 10 9 13 13 C 1.53195 * 109.58895 * 168.34266 * 11 10 9 14 14 C 1.53040 * 109.31496 * 174.42464 * 13 11 10 15 15 C 1.53041 * 109.53627 * 298.63104 * 14 13 11 16 16 C 1.52766 * 109.37958 * 61.24021 * 15 14 13 17 17 N 1.46924 * 109.58669 * 287.63107 * 11 10 9 18 18 C 1.34772 * 120.63141 * 6.57818 * 17 11 10 19 19 O 1.21288 * 120.00003 * 4.75330 * 18 17 11 20 20 C 1.50697 * 120.00398 * 184.74315 * 18 17 11 21 21 H 1.09005 * 109.19453 * 31.25537 * 20 18 17 22 22 O 1.43041 * 108.81664 * 151.30480 * 20 18 17 23 23 C 1.43205 * 112.83745 * 172.14093 * 22 20 18 24 24 C 1.52972 * 108.47742 * 289.03778 * 23 22 20 25 25 C 1.50749 * 109.75023 * 49.30209 * 24 23 22 26 26 C 1.38594 * 118.76425 * 162.92005 * 25 24 23 27 27 C 1.38067 * 120.27713 * 179.29109 * 26 25 24 28 28 C 1.38263 * 119.85720 * 0.24985 * 27 26 25 29 29 C 1.38058 * 119.89882 * 0.10814 * 28 27 26 30 30 C 1.37901 * 121.34918 * 342.95540 * 25 24 23 31 31 H 0.97003 * 119.99690 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00577 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47447 * 65.41417 * 10 9 7 34 34 H 1.09000 * 109.47110 * 305.41637 * 10 9 7 35 35 H 1.09002 * 109.49744 * 294.37224 * 13 11 10 36 36 H 1.09005 * 109.49970 * 54.43541 * 13 11 10 37 37 H 1.08996 * 109.45927 * 58.65227 * 14 13 11 38 38 H 1.08996 * 109.46119 * 178.61626 * 14 13 11 39 39 H 1.08995 * 109.50342 * 181.31786 * 15 14 13 40 40 H 1.09003 * 109.50040 * 301.38796 * 15 14 13 41 41 H 1.09008 * 109.50695 * 185.70738 * 16 15 14 42 42 H 1.08992 * 109.43080 * 65.42753 * 16 15 14 43 43 H 1.08994 * 109.63794 * 169.33909 * 23 22 20 44 44 H 1.09000 * 109.80578 * 48.82922 * 23 22 20 45 45 H 1.08999 * 109.42604 * 289.22063 * 24 23 22 46 46 H 1.09001 * 109.42478 * 169.38449 * 24 23 22 47 47 H 1.08004 * 119.85899 * 359.56304 * 26 25 24 48 48 H 1.07991 * 120.07512 * 180.22482 * 27 26 25 49 49 H 1.07993 * 120.04895 * 180.09458 * 28 27 26 50 50 H 1.08000 * 119.84866 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0693 -4.8164 -0.1357 12 1 0.3731 -4.6122 -0.9491 13 6 1.8339 -6.1116 -0.4272 14 6 0.8556 -7.2885 -0.4244 15 6 0.2066 -7.4111 0.9562 16 6 -0.5721 -6.1337 1.2656 17 7 0.3251 -4.9793 1.1206 18 6 0.4669 -4.0897 2.1230 19 8 1.1468 -3.0983 1.9623 20 6 -0.2194 -4.3267 3.4436 21 1 -0.2921 -5.3996 3.6222 22 8 0.5492 -3.7097 4.4802 23 6 -0.1144 -3.7267 5.7492 24 6 -1.2888 -2.7480 5.6952 25 6 -2.1078 -3.0028 4.4555 26 6 -3.3926 -2.4878 4.3874 27 6 -4.1648 -2.6898 3.2609 28 6 -3.6559 -3.4135 2.1983 29 6 -2.3788 -3.9332 2.2683 30 6 -1.6035 -3.7333 3.4002 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 0.0005 33 1 2.6100 -3.7577 0.9350 34 1 2.7554 -3.6737 -0.8370 35 1 2.3130 -6.0393 -1.4036 36 1 2.5927 -6.2667 0.3398 37 1 0.0833 -7.1206 -1.1750 38 1 1.3930 -8.2080 -0.6558 39 1 -0.4725 -8.2636 0.9646 40 1 0.9802 -7.5548 1.7105 41 1 -0.9505 -6.1764 2.2870 42 1 -1.4049 -6.0391 0.5689 43 1 0.5815 -3.4211 6.5305 44 1 -0.4835 -4.7304 5.9595 45 1 -0.9089 -1.7265 5.6750 46 1 -1.9146 -2.8837 6.5773 47 1 -3.7899 -1.9222 5.2174 48 1 -5.1642 -2.2839 3.2098 49 1 -4.2567 -3.5721 1.3150 50 1 -1.9820 -4.4979 1.4377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484618358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:46 Heat of formation + Delta-G solvation = -14.015733 kcal Electronic energy + Delta-G solvation = -32767.961591 eV Core-core repulsion = 28761.244433 eV Total energy + Delta-G solvation = -4006.717158 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.11641 -40.62550 -38.68727 -37.92835 -36.42609 -34.54091 -33.64889 -33.59318 -32.40627 -31.50058 -30.47362 -27.97848 -27.10131 -25.69282 -24.85344 -24.42186 -23.81169 -22.53613 -21.70728 -21.03541 -20.03572 -19.19198 -18.39255 -17.82821 -17.58141 -16.70991 -16.64529 -16.50517 -16.19666 -15.80215 -15.62845 -15.41868 -15.26098 -15.05038 -14.81380 -14.66842 -14.51453 -14.19452 -14.04815 -13.77586 -13.60618 -13.44149 -13.39492 -13.13902 -12.89124 -12.82433 -12.74584 -12.65050 -12.18598 -12.07822 -11.97181 -11.83479 -11.70051 -11.59307 -11.48852 -11.33728 -10.86898 -10.68878 -10.14006 -9.68417 -9.50788 -9.38457 -8.61486 -7.83042 -5.00854 0.30849 0.42399 1.39473 1.42951 1.51851 1.76328 1.95308 2.60494 2.76941 2.99421 3.48821 3.52050 3.53792 3.72828 3.83623 3.84026 3.88009 3.95486 4.08275 4.12879 4.15074 4.23154 4.26570 4.34420 4.39825 4.48856 4.53105 4.55791 4.60179 4.70812 4.73252 4.80180 4.86198 4.90977 4.99629 5.03742 5.05806 5.11975 5.14985 5.15619 5.26451 5.31313 5.46499 5.50173 5.53639 5.56162 5.56804 5.80078 6.02855 6.06452 6.37064 6.58042 7.43264 7.54221 8.25108 8.47827 9.41424 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007590 B = 0.005967 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3688.080991 B = 4691.095283 C = 6729.857287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.085 4.085 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.302 1.302 7 C -0.209 4.209 8 H 0.059 0.941 9 N -0.698 5.698 10 C 0.163 3.837 11 C 0.149 3.851 12 H 0.063 0.937 13 C -0.119 4.119 14 C -0.112 4.112 15 C -0.128 4.128 16 C 0.096 3.904 17 N -0.608 5.608 18 C 0.479 3.521 19 O -0.486 6.486 20 C 0.124 3.876 21 H 0.113 0.887 22 O -0.385 6.385 23 C 0.052 3.948 24 C -0.114 4.114 25 C -0.086 4.086 26 C -0.127 4.127 27 C -0.117 4.117 28 C -0.131 4.131 29 C -0.124 4.124 30 C -0.127 4.127 31 H 0.242 0.758 32 H 0.367 0.633 33 H 0.011 0.989 34 H 0.018 0.982 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.121 0.879 47 H 0.147 0.853 48 H 0.149 0.851 49 H 0.140 0.860 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.427 -20.340 9.038 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.276 4.276 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.230 1.230 7 C -0.342 4.342 8 H 0.077 0.923 9 N -0.339 5.339 10 C 0.037 3.963 11 C 0.045 3.955 12 H 0.081 0.919 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.166 4.166 16 C -0.026 4.026 17 N -0.346 5.346 18 C 0.263 3.737 19 O -0.356 6.356 20 C 0.063 3.937 21 H 0.130 0.870 22 O -0.304 6.304 23 C -0.023 4.023 24 C -0.151 4.151 25 C -0.086 4.086 26 C -0.145 4.145 27 C -0.135 4.135 28 C -0.148 4.148 29 C -0.142 4.142 30 C -0.128 4.128 31 H 0.051 0.949 32 H 0.199 0.801 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.136 0.864 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.139 0.861 47 H 0.164 0.836 48 H 0.167 0.833 49 H 0.158 0.842 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.655 -19.602 8.933 22.861 hybrid contribution -0.027 1.567 -0.025 1.568 sum -7.682 -18.035 8.908 21.532 Atomic orbital electron populations 1.69844 1.06258 1.24736 1.61402 1.25348 0.96361 1.00330 1.05575 0.85172 0.78090 0.80806 0.76461 1.19606 1.21663 1.22981 1.19504 0.90678 0.85983 1.38045 0.92263 1.42265 1.04643 1.00406 1.86564 1.20876 0.93852 0.85286 0.96335 1.21371 0.93152 0.95589 0.85356 0.91911 1.21872 0.98359 0.93072 1.02472 1.21493 0.98441 0.97589 0.97411 1.21860 1.00391 0.96728 0.97630 1.22058 0.92521 0.84991 1.03007 1.47972 1.45976 1.26216 1.14452 1.20529 0.83818 0.83456 0.85852 1.91227 1.37892 1.26859 1.79634 1.20879 0.87704 0.97586 0.87567 0.87007 1.88255 1.42835 1.80790 1.18513 1.22956 0.94987 0.99728 0.84662 1.21194 0.97193 1.00627 0.96095 1.19810 0.95461 0.97167 0.96191 1.21355 0.93378 1.00083 0.99696 1.21483 1.01037 0.97813 0.93183 1.21373 0.95653 0.98266 0.99546 1.21484 0.95024 1.00749 0.96949 1.19922 0.95003 1.01803 0.96077 0.94938 0.80143 0.97163 0.96393 0.89959 0.92070 0.91160 0.89489 0.87692 0.91736 0.89072 0.90312 0.86392 0.90057 0.91506 0.86134 0.83558 0.83341 0.84205 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.75 13.06 21.65 0.28 -65.46 16 2 C -0.09 -5.51 5.50 84.86 0.47 -5.05 16 3 Si 0.96 52.13 29.55 68.60 2.03 54.16 16 4 H -0.27 -13.94 7.11 99.48 0.71 -13.23 16 5 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 6 H -0.30 -16.47 7.11 99.48 0.71 -15.77 16 7 C -0.21 -13.36 9.72 84.04 0.82 -12.54 16 8 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 9 N -0.70 -40.45 3.18 -343.45 -1.09 -41.54 16 10 C 0.16 7.60 4.89 86.38 0.42 8.02 16 11 C 0.15 5.11 2.91 44.98 0.13 5.24 16 12 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.12 -2.89 5.34 30.67 0.16 -2.72 16 14 C -0.11 -1.85 5.89 30.62 0.18 -1.67 16 15 C -0.13 -1.95 6.07 30.53 0.19 -1.76 16 16 C 0.10 2.00 4.35 86.22 0.37 2.38 16 17 N -0.61 -19.61 2.64 -795.85 -2.10 -21.71 16 18 C 0.48 19.65 5.76 87.66 0.50 20.16 16 19 O -0.49 -26.50 10.36 14.61 0.15 -26.35 16 20 C 0.12 4.17 2.48 29.09 0.07 4.24 16 21 H 0.11 2.89 6.22 -2.38 -0.01 2.87 16 22 O -0.39 -14.21 10.11 -131.31 -1.33 -15.54 16 23 C 0.05 1.29 6.84 71.97 0.49 1.79 16 24 C -0.11 -2.87 6.01 29.85 0.18 -2.69 16 25 C -0.09 -2.62 5.78 -19.84 -0.11 -2.73 16 26 C -0.13 -3.39 9.67 22.31 0.22 -3.17 16 27 C -0.12 -3.04 10.05 22.24 0.22 -2.82 16 28 C -0.13 -3.71 10.05 22.23 0.22 -3.48 16 29 C -0.12 -3.95 8.52 22.32 0.19 -3.76 16 30 C -0.13 -4.25 5.43 -19.86 -0.11 -4.35 16 31 H 0.24 15.92 8.31 -92.71 -0.77 15.15 16 32 H 0.37 22.76 7.15 -92.71 -0.66 22.09 16 33 H 0.01 0.55 6.41 -2.39 -0.02 0.53 16 34 H 0.02 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.72 4.97 -2.38 -0.01 1.71 16 42 H 0.08 1.51 7.30 -2.39 -0.02 1.49 16 43 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.08 1.52 8.07 -2.39 -0.02 1.50 16 45 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 48 H 0.15 2.89 8.06 -2.92 -0.02 2.87 16 49 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 50 H 0.13 3.95 4.04 -2.91 -0.01 3.94 16 Total: -1.00 -88.69 379.44 2.85 -85.84 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.29 Total: 35.53 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 4.62 Total: -4.92 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -2.91 Total: -128.71 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -1.18 Total: -41.89 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.03 Total: 54.16 kcal Total: -88.69 2.85 -85.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484618358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.823 kcal (2) G-P(sol) polarization free energy of solvation -88.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds