Wall clock time and date at job start Wed Apr 1 2020 03:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00372 * 2 1 4 4 H 1.48503 * 109.47145 * 244.99666 * 3 2 1 5 5 H 1.48493 * 109.47150 * 4.99638 * 3 2 1 6 6 H 1.48498 * 109.47121 * 124.99902 * 3 2 1 7 7 C 1.38822 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99921 * 185.62377 * 7 2 1 9 9 N 1.36933 * 119.99903 * 5.62879 * 7 2 1 10 10 C 1.46496 * 119.99893 * 184.94403 * 9 7 2 11 11 C 1.53000 * 112.84834 * 296.63782 * 10 9 7 12 12 N 1.46501 * 109.47027 * 291.12543 * 11 10 9 13 13 C 1.34778 * 120.00032 * 175.60322 * 12 11 10 14 14 O 1.21280 * 120.00010 * 4.94007 * 13 12 11 15 15 C 1.50707 * 120.00061 * 184.93719 * 13 12 11 16 16 C 1.50691 * 109.99230 * 274.89668 * 15 13 12 17 17 C 1.38237 * 120.00029 * 293.29869 * 16 15 13 18 18 C 1.38238 * 120.00163 * 179.76910 * 17 16 15 19 19 C 1.38237 * 119.99766 * 0.50290 * 18 17 16 20 20 C 1.38235 * 119.99789 * 359.75017 * 19 18 17 21 21 C 1.38231 * 120.00342 * 113.57197 * 16 15 13 22 22 C 1.54095 * 109.87538 * 153.80720 * 15 13 12 23 23 C 1.54812 * 104.30856 * 242.53868 * 22 15 13 24 24 C 1.55352 * 101.92799 * 20.92655 * 23 22 15 25 25 O 1.43748 * 109.87625 * 35.98195 * 15 13 12 26 26 C 1.53783 * 113.61988 * 67.83473 * 10 9 7 27 27 C 1.53954 * 87.01837 * 89.23202 * 26 10 9 28 28 C 1.53774 * 87.11092 * 25.36342 * 27 26 10 29 29 H 0.97005 * 119.99623 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00248 * 4.93092 * 9 7 2 31 31 H 1.08997 * 109.47581 * 171.12583 * 11 10 9 32 32 H 1.09000 * 109.47004 * 51.11642 * 11 10 9 33 33 H 0.97003 * 120.00134 * 355.59867 * 12 11 10 34 34 H 1.08006 * 119.99833 * 359.97438 * 17 16 15 35 35 H 1.08002 * 119.99670 * 180.22656 * 18 17 16 36 36 H 1.08002 * 119.99775 * 179.72584 * 19 18 17 37 37 H 1.08002 * 119.99604 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.99641 * 359.97438 * 21 16 15 39 39 H 1.08993 * 110.49356 * 1.28846 * 22 15 13 40 40 H 1.09001 * 110.48672 * 123.80417 * 22 15 13 41 41 H 1.09003 * 110.90991 * 139.14594 * 23 22 15 42 42 H 1.08997 * 110.91000 * 262.75349 * 23 22 15 43 43 H 1.09003 * 110.58493 * 204.45865 * 24 23 22 44 44 H 1.08993 * 110.77781 * 81.52792 * 24 23 22 45 45 H 1.08999 * 113.61384 * 203.75320 * 26 10 9 46 46 H 1.09004 * 113.60698 * 334.65171 * 26 10 9 47 47 H 1.09003 * 113.53239 * 270.81261 * 27 26 10 48 48 H 1.09000 * 113.73988 * 139.94896 * 27 26 10 49 49 H 1.08999 * 113.61315 * 220.08795 * 28 27 26 50 50 H 1.09001 * 113.61515 * 89.19291 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0103 1.7504 -1.2689 5 1 1.2900 2.7438 0.1219 6 1 3.1932 1.6448 1.1469 7 6 2.0102 -1.2023 -0.0005 8 1 3.0862 -1.2046 0.0911 9 7 1.3303 -2.3852 -0.1174 10 6 2.0494 -3.6570 -0.0094 11 6 3.0830 -3.8513 -1.1206 12 7 2.3948 -4.0391 -2.4002 13 6 3.1070 -4.1411 -3.5398 14 8 4.3188 -4.1676 -3.4973 15 6 2.3977 -4.2223 -4.8671 16 6 2.0143 -5.6499 -5.1598 17 6 2.9956 -6.5960 -5.3894 18 6 2.6440 -7.9067 -5.6532 19 6 1.3107 -8.2690 -5.6976 20 6 0.3292 -7.3218 -5.4732 21 6 0.6810 -6.0123 -5.2042 22 6 3.3136 -3.6861 -5.9843 23 6 2.5571 -2.4558 -6.5417 24 6 1.6050 -2.1043 -5.3655 25 8 1.2222 -3.3952 -4.8444 26 6 2.5996 -3.9360 1.3993 27 6 1.2513 -4.6137 1.7043 28 6 1.1272 -4.8708 0.1932 29 1 -0.4850 0.8401 -0.0004 30 1 0.3726 -2.3811 -0.2715 31 1 3.6903 -4.7297 -0.9024 32 1 3.7239 -2.9716 -1.1785 33 1 1.4265 -4.0900 -2.4273 34 1 4.0372 -6.3119 -5.3594 35 1 3.4109 -8.6466 -5.8290 36 1 1.0359 -9.2921 -5.9081 37 1 -0.7124 -7.6048 -5.5083 38 1 -0.0858 -5.2723 -5.0288 39 1 4.2790 -3.3875 -5.5758 40 1 3.4458 -4.4374 -6.7628 41 1 3.2454 -1.6355 -6.7457 42 1 1.9918 -2.7189 -7.4357 43 1 0.7315 -1.5626 -5.7283 44 1 2.1273 -1.5232 -4.6056 45 1 3.4457 -4.6230 1.4094 46 1 2.7783 -3.0341 1.9847 47 1 0.4982 -3.9287 2.0939 48 1 1.3419 -5.5245 2.2962 49 1 0.1190 -4.7225 -0.1935 50 1 1.5700 -5.8139 -0.1270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484659734.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:41 Heat of formation + Delta-G solvation = -37.901717 kcal Electronic energy + Delta-G solvation = -31695.773882 eV Core-core repulsion = 27688.020950 eV Total energy + Delta-G solvation = -4007.752932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.06941 -40.49619 -39.55499 -39.06630 -35.43495 -35.21798 -33.55147 -32.91815 -31.93148 -31.70799 -29.55386 -28.46130 -26.73908 -25.85593 -24.94552 -23.78133 -23.36652 -22.70524 -22.17664 -20.90387 -19.75471 -19.16163 -18.67706 -18.43784 -17.42164 -17.02321 -16.69649 -16.49502 -16.10144 -15.99052 -15.68241 -15.61249 -15.49056 -15.15751 -14.92946 -14.67123 -14.26998 -14.22661 -14.10647 -13.83608 -13.53410 -13.13954 -13.03364 -12.96619 -12.87864 -12.84629 -12.64522 -12.36257 -12.21098 -12.18299 -11.99710 -11.87101 -11.83464 -11.63612 -11.56669 -11.44200 -10.97674 -10.84758 -10.56637 -10.01567 -9.82550 -9.64415 -8.99429 -7.93662 -5.20393 0.33122 0.49548 1.43765 1.44584 1.49165 1.50694 2.17854 2.53555 2.56822 2.86981 3.36194 3.43730 3.60089 3.64810 3.73344 3.78036 3.93987 3.96865 4.03227 4.05478 4.09625 4.17638 4.20117 4.27866 4.36151 4.57134 4.61132 4.64810 4.66854 4.75816 4.78309 4.83325 4.84957 4.86887 4.90161 4.95445 5.01565 5.06869 5.09235 5.16713 5.28502 5.38915 5.43028 5.50340 5.56931 5.59121 5.62936 5.68585 5.78496 6.08414 6.29293 6.54923 7.15181 7.35299 8.08971 8.33609 9.28378 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011016 B = 0.004027 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.076039 B = 6951.427975 C = 8278.096213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.062 4.062 3 Si 0.956 3.044 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.225 4.225 8 H 0.063 0.937 9 N -0.703 5.703 10 C 0.160 3.840 11 C 0.128 3.872 12 N -0.688 5.688 13 C 0.502 3.498 14 O -0.577 6.577 15 C 0.136 3.864 16 C -0.093 4.093 17 C -0.119 4.119 18 C -0.122 4.122 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.104 4.104 22 C -0.134 4.134 23 C -0.141 4.141 24 C 0.036 3.964 25 O -0.362 6.362 26 C -0.149 4.149 27 C -0.119 4.119 28 C -0.128 4.128 29 H 0.249 0.751 30 H 0.376 0.624 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.406 0.594 34 H 0.118 0.882 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.038 0.962 45 H 0.094 0.906 46 H 0.047 0.953 47 H 0.059 0.941 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 -16.693 -13.339 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.786 3.214 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.081 0.919 9 N -0.342 5.342 10 C 0.068 3.932 11 C 0.002 3.998 12 N -0.336 5.336 13 C 0.288 3.712 14 O -0.458 6.458 15 C 0.093 3.907 16 C -0.094 4.094 17 C -0.137 4.137 18 C -0.140 4.140 19 C -0.132 4.132 20 C -0.141 4.141 21 C -0.122 4.122 22 C -0.172 4.172 23 C -0.178 4.178 24 C -0.040 4.040 25 O -0.280 6.280 26 C -0.189 4.189 27 C -0.156 4.156 28 C -0.166 4.166 29 H 0.058 0.942 30 H 0.209 0.791 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.242 0.758 34 H 0.136 0.864 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.135 0.865 44 H 0.057 0.943 45 H 0.112 0.888 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.105 0.895 49 H 0.082 0.918 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.360 -16.599 -13.158 21.313 hybrid contribution -0.009 1.825 0.312 1.852 sum 2.351 -14.773 -12.846 19.718 Atomic orbital electron populations 1.69792 1.06078 1.25766 1.59337 1.25287 0.96110 1.00116 1.04007 0.85481 0.77490 0.80663 0.77784 1.21492 1.21998 1.20595 1.19232 0.91065 0.85137 1.40262 0.91890 1.42061 1.07040 0.99518 1.85548 1.21078 0.92774 0.87011 0.92323 1.21719 0.95452 0.99245 0.83387 1.45697 1.10987 1.70703 1.06196 1.21231 0.87497 0.75599 0.86918 1.90617 1.14934 1.52559 1.87701 1.20922 0.86514 0.91324 0.91987 1.19375 0.94992 0.91821 1.03215 1.21065 0.98846 0.93864 0.99905 1.21384 0.97556 0.95344 0.99690 1.21566 0.92494 1.00708 0.98409 1.21469 1.01009 0.92339 0.99248 1.21124 0.95171 0.97303 0.98592 1.22980 0.98692 0.99113 0.96440 1.23208 0.98439 0.97590 0.98559 1.23829 1.00324 0.85071 0.94746 1.88875 1.30033 1.23555 1.85581 1.23367 0.97955 1.00148 0.97418 1.22568 0.96810 1.00190 0.96039 1.23081 0.99337 0.97136 0.97018 0.94160 0.79096 0.91335 0.94814 0.75840 0.86436 0.83637 0.83085 0.83625 0.85500 0.90392 0.88090 0.88614 0.88116 0.86545 0.94317 0.88798 0.93454 0.92189 0.89484 0.91760 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.09 13.08 21.65 0.28 -56.81 16 2 C -0.06 -3.51 5.50 84.87 0.47 -3.05 16 3 Si 0.96 46.47 29.56 68.60 2.03 48.50 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 7 C -0.23 -12.20 9.13 84.04 0.77 -11.44 16 8 H 0.06 3.44 7.47 -2.91 -0.02 3.42 16 9 N -0.70 -33.53 5.19 -300.97 -1.56 -35.09 16 10 C 0.16 6.03 0.84 4.13 0.00 6.03 16 11 C 0.13 4.89 5.09 86.38 0.44 5.33 16 12 N -0.69 -25.00 5.31 -463.05 -2.46 -27.47 16 13 C 0.50 18.19 6.46 87.66 0.57 18.75 16 14 O -0.58 -23.76 15.60 -3.03 -0.05 -23.81 16 15 C 0.14 4.01 0.90 -11.92 -0.01 3.99 16 16 C -0.09 -2.43 4.67 -19.87 -0.09 -2.52 16 17 C -0.12 -2.81 8.63 22.27 0.19 -2.62 16 18 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 19 C -0.11 -1.84 10.05 22.27 0.22 -1.62 16 20 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 21 C -0.10 -2.44 9.38 22.27 0.21 -2.23 16 22 C -0.13 -3.45 5.77 31.58 0.18 -3.27 16 23 C -0.14 -3.05 7.18 32.02 0.23 -2.82 16 24 C 0.04 1.01 7.67 72.79 0.56 1.57 16 25 O -0.36 -11.04 8.82 -148.98 -1.31 -12.36 16 26 C -0.15 -5.14 7.30 31.18 0.23 -4.91 16 27 C -0.12 -3.64 8.00 31.18 0.25 -3.39 16 28 C -0.13 -3.89 6.92 31.12 0.22 -3.67 16 29 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 30 H 0.38 19.36 7.88 -92.71 -0.73 18.63 16 31 H 0.07 2.40 7.99 -2.39 -0.02 2.38 16 32 H 0.03 1.52 7.45 -2.39 -0.02 1.50 16 33 H 0.41 14.48 7.76 -92.71 -0.72 13.76 16 34 H 0.12 2.91 7.93 -2.91 -0.02 2.89 16 35 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.13 3.10 7.06 -2.91 -0.02 3.07 16 39 H 0.08 2.30 6.75 -2.39 -0.02 2.29 16 40 H 0.10 2.21 7.20 -2.39 -0.02 2.19 16 41 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.12 2.75 8.14 -2.39 -0.02 2.74 16 44 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 2.73 8.00 -2.39 -0.02 2.71 16 46 H 0.05 1.89 7.93 -2.38 -0.02 1.88 16 47 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.06 2.00 8.09 -2.39 -0.02 1.98 16 50 H 0.10 2.63 8.10 -2.39 -0.02 2.61 16 Total: -1.00 -67.33 403.42 1.30 -66.03 By element: Atomic # 1 Polarization: 51.39 SS G_CDS: -0.50 Total: 50.90 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 4.88 Total: -9.90 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -3.74 Total: -119.37 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -1.36 Total: -36.16 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -67.33 1.30 -66.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484659734.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.129 kcal (2) G-P(sol) polarization free energy of solvation -67.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds