Wall clock time and date at job start Wed Apr 1 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99976 * 2 1 4 4 H 1.48500 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47047 * 300.00117 * 3 2 1 6 6 H 1.48505 * 109.47179 * 60.00025 * 3 2 1 7 7 C 1.38812 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00035 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00154 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.84738 * 336.20175 * 10 9 7 12 12 C 1.53952 * 113.61191 * 107.46659 * 10 9 7 13 13 C 1.53783 * 87.01925 * 89.20257 * 12 10 9 14 14 H 1.08998 * 113.61735 * 270.77243 * 13 12 10 15 15 C 1.53003 * 113.61887 * 139.94872 * 13 12 10 16 16 N 1.46499 * 109.46708 * 85.86239 * 15 13 12 17 17 C 1.34784 * 119.99893 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99649 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99774 * 179.72962 * 17 16 15 20 20 C 1.50699 * 109.86777 * 275.69515 * 19 17 16 21 21 C 1.38239 * 120.00500 * 269.02775 * 20 19 17 22 22 C 1.38233 * 120.00037 * 179.76205 * 21 20 19 23 23 C 1.38238 * 119.99907 * 0.49464 * 22 21 20 24 24 C 1.38229 * 120.00191 * 359.78249 * 23 22 21 25 25 C 1.38237 * 119.99729 * 89.30224 * 20 19 17 26 26 C 1.54097 * 109.87541 * 154.69651 * 19 17 16 27 27 C 1.54814 * 104.18582 * 242.59837 * 26 19 17 28 28 C 1.54996 * 102.09000 * 20.88134 * 27 26 19 29 29 O 1.43735 * 109.88526 * 36.70483 * 19 17 16 30 30 C 1.53785 * 87.17467 * 25.36109 * 13 12 10 31 31 H 0.96996 * 120.00327 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00086 * 0.02562 * 9 7 2 33 33 H 1.09002 * 113.66745 * 334.67899 * 12 10 9 34 34 H 1.09000 * 113.61203 * 203.71970 * 12 10 9 35 35 H 1.08998 * 109.46692 * 325.86741 * 15 13 12 36 36 H 1.08994 * 109.47584 * 205.86605 * 15 13 12 37 37 H 0.97005 * 120.00261 * 0.02562 * 16 15 13 38 38 H 1.08000 * 119.99403 * 0.02562 * 21 20 19 39 39 H 1.08006 * 119.99870 * 180.25181 * 22 21 20 40 40 H 1.07996 * 119.99271 * 179.76523 * 23 22 21 41 41 H 1.07998 * 119.99973 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00192 * 0.02562 * 25 20 19 43 43 H 1.09002 * 110.49576 * 1.27298 * 26 19 17 44 44 H 1.08998 * 110.49308 * 123.93052 * 26 19 17 45 45 H 1.09000 * 110.90670 * 139.07863 * 27 26 19 46 46 H 1.08995 * 110.90947 * 262.64715 * 27 26 19 47 47 H 1.09000 * 110.61877 * 81.47577 * 28 27 26 48 48 H 1.08995 * 110.62254 * 204.31484 * 28 27 26 49 49 H 1.08993 * 113.61622 * 89.15643 * 30 13 12 50 50 H 1.08998 * 113.61581 * 220.06334 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0653 -3.5637 -0.4077 12 6 2.0007 -4.4032 1.3436 13 6 0.7227 -5.0809 0.8217 14 1 -0.1887 -4.5277 1.0484 15 6 0.6233 -6.5639 1.1846 16 7 0.0274 -6.7020 2.5157 17 6 -0.1589 -7.9266 3.0470 18 8 0.1674 -8.9142 2.4232 19 6 -0.7663 -8.0683 4.4188 20 6 0.3035 -7.9227 5.4702 21 6 0.9758 -9.0390 5.9316 22 6 1.9604 -8.9047 6.8924 23 6 2.2658 -7.6553 7.3993 24 6 1.5896 -6.5398 6.9420 25 6 0.6086 -6.6734 5.9773 26 6 -1.4467 -9.4446 4.5508 27 6 -2.9407 -9.1090 4.7793 28 6 -3.0383 -7.6662 4.2213 29 8 -1.7796 -7.0671 4.6106 30 6 1.2596 -4.8286 -0.5971 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.8301 -3.7500 2.1994 34 1 2.8302 -5.0937 1.4955 35 1 1.6199 -7.0053 1.1851 36 1 -0.0005 -7.0762 0.4522 37 1 -0.2332 -5.9120 3.0148 38 1 0.7345 -10.0154 5.5383 39 1 2.4885 -9.7764 7.2500 40 1 3.0325 -7.5510 8.1527 41 1 1.8279 -5.5638 7.3383 42 1 0.0800 -5.8019 5.6204 43 1 -1.3212 -10.0219 3.6348 44 1 -1.0434 -9.9894 5.4044 45 1 -3.5822 -9.7877 4.2172 46 1 -3.1870 -9.1336 5.8408 47 1 -3.1375 -7.6804 3.1359 48 1 -3.8748 -7.1349 4.6751 49 1 1.8862 -5.6356 -0.9768 50 1 0.4918 -4.5183 -1.3058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488876463.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:44 Heat of formation + Delta-G solvation = -21.631212 kcal Electronic energy + Delta-G solvation = -30359.230017 eV Core-core repulsion = 26352.182627 eV Total energy + Delta-G solvation = -4007.047390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.21958 -39.15009 -38.65359 -38.06767 -34.73839 -33.23409 -32.86261 -32.19083 -30.98626 -30.17650 -28.55413 -27.26905 -25.05519 -24.38991 -23.59364 -23.16265 -22.32553 -21.66514 -21.24282 -19.98550 -18.46763 -17.83370 -17.64615 -17.16918 -16.66566 -15.96677 -15.74918 -15.13420 -15.10745 -14.91761 -14.81160 -14.45779 -14.13856 -13.95286 -13.65626 -13.54821 -13.46226 -13.12161 -12.88606 -12.86006 -12.30382 -12.25008 -12.09113 -11.91486 -11.58507 -11.51194 -11.37174 -11.13165 -11.05871 -11.03789 -10.88236 -10.81316 -10.47669 -10.14268 -10.00145 -9.70000 -9.69224 -9.45701 -9.10577 -8.99215 -8.92795 -8.85654 -7.00219 -5.81161 -3.10110 1.03963 1.21237 2.50382 3.09604 3.33319 3.41191 3.47200 3.49297 3.60103 4.17174 4.33248 4.52754 4.55459 4.63390 4.74619 4.80694 4.82738 4.91481 5.04775 5.07747 5.09119 5.24017 5.27510 5.33690 5.36338 5.42274 5.45261 5.48677 5.60101 5.63739 5.70196 5.70970 5.76346 5.83419 5.86727 5.95557 6.11605 6.18421 6.21961 6.24750 6.32357 6.37552 6.40785 6.52072 6.60271 6.75522 6.76348 6.90618 7.04937 7.51797 7.69234 8.14666 8.38008 9.48764 10.06375 10.40672 11.41362 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.002567 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.956146 B =10906.238373 C =11583.254374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.062 0.938 12 C -0.168 4.168 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.129 3.871 16 N -0.707 5.707 17 C 0.509 3.491 18 O -0.540 6.540 19 C 0.133 3.867 20 C -0.084 4.084 21 C -0.105 4.105 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.088 4.088 26 C -0.142 4.142 27 C -0.153 4.153 28 C 0.042 3.958 29 O -0.354 6.354 30 C -0.148 4.148 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.407 0.593 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.101 0.899 49 H 0.076 0.924 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -21.148 13.914 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.056 3.944 11 H 0.080 0.920 12 C -0.209 4.209 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.006 3.994 16 N -0.358 5.358 17 C 0.293 3.707 18 O -0.418 6.418 19 C 0.090 3.910 20 C -0.084 4.084 21 C -0.123 4.123 22 C -0.141 4.141 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.106 4.106 26 C -0.180 4.180 27 C -0.190 4.190 28 C -0.034 4.034 29 O -0.273 6.273 30 C -0.187 4.187 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.242 0.758 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.119 0.881 49 H 0.095 0.905 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.700 -21.436 13.496 25.475 hybrid contribution -0.096 1.150 0.221 1.175 sum -2.796 -20.286 13.717 24.648 Atomic orbital electron populations 1.69669 1.05128 1.25660 1.57576 1.24761 0.95540 0.97779 1.02822 0.86105 0.78828 0.83997 0.77192 1.20491 1.21835 1.21838 1.19335 0.91144 0.83959 1.42785 0.90954 1.42179 1.05693 0.99445 1.87109 1.21086 0.95065 0.85577 0.92722 0.91980 1.23905 0.95630 0.99603 1.01748 1.22706 0.99654 0.92849 0.98578 0.88877 1.21521 0.98009 0.97179 0.82666 1.46000 1.62057 1.08263 1.19446 1.20672 0.79039 0.83712 0.87261 1.90676 1.51638 1.37674 1.61852 1.20925 0.88844 0.90289 0.90925 1.19351 0.97331 0.94405 0.97340 1.21051 0.96162 0.98150 0.96932 1.21101 0.97815 0.97694 0.97481 1.21230 0.99492 0.92767 0.99744 1.21209 0.96196 0.98996 0.97409 1.21044 0.96482 0.96989 0.96044 1.23106 0.94667 0.95187 1.05016 1.23143 0.96233 0.97150 1.02492 1.23728 0.86818 0.93028 0.99815 1.89004 1.16086 1.35368 1.86793 1.23439 1.00497 0.99694 0.95090 0.93496 0.78111 0.91486 0.91473 0.91569 0.91846 0.75750 0.85475 0.85810 0.85944 0.85600 0.85212 0.88381 0.89113 0.89742 0.90164 0.91697 0.88101 0.90495 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -17.42 5.31 -52.55 -0.28 -17.70 16 10 C 0.17 3.30 4.57 -67.02 -0.31 2.99 16 11 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 12 C -0.17 -2.85 7.44 -25.83 -0.19 -3.05 16 13 C -0.12 -1.83 3.63 -89.80 -0.33 -2.16 16 14 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 15 C 0.13 1.82 5.50 -4.04 -0.02 1.80 16 16 N -0.71 -9.58 5.47 -60.30 -0.33 -9.91 16 17 C 0.51 7.11 6.65 -10.98 -0.07 7.04 16 18 O -0.54 -8.93 15.57 5.56 0.09 -8.84 16 19 C 0.13 1.53 0.91 -92.35 -0.08 1.45 16 20 C -0.08 -0.96 4.84 -104.62 -0.51 -1.47 16 21 C -0.10 -1.08 8.73 -39.58 -0.35 -1.43 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 23 C -0.11 -1.05 10.05 -39.58 -0.40 -1.45 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.09 -0.99 9.36 -39.58 -0.37 -1.37 16 26 C -0.14 -1.36 5.63 -25.20 -0.14 -1.50 16 27 C -0.15 -1.15 7.15 -24.72 -0.18 -1.33 16 28 C 0.04 0.37 7.66 38.21 0.29 0.67 16 29 O -0.35 -3.98 9.33 -35.23 -0.33 -4.31 16 30 C -0.15 -2.39 7.39 -25.91 -0.19 -2.58 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.38 10.04 7.90 -40.82 -0.32 9.72 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 35 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.41 5.28 7.98 -40.82 -0.33 4.95 16 38 H 0.13 1.15 6.43 -52.49 -0.34 0.82 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.13 1.46 7.55 -52.49 -0.40 1.07 16 43 H 0.10 1.05 6.73 -51.93 -0.35 0.70 16 44 H 0.09 0.75 5.76 -51.93 -0.30 0.45 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 50 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 404.49 15.07 6.10 6.10 Total: -1.00 -32.01 404.49 -10.83 -42.83 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -7.89 Total: 14.51 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -3.88 Total: -12.77 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.12 Total: -54.69 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.24 Total: -13.16 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.01 -10.83 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488876463.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.200 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds