Wall clock time and date at job start Wed Apr 1 2020 03:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99976 * 2 1 4 4 H 1.48500 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47047 * 300.00117 * 3 2 1 6 6 H 1.48505 * 109.47179 * 60.00025 * 3 2 1 7 7 C 1.38812 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00035 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00154 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.84738 * 336.20175 * 10 9 7 12 12 C 1.53952 * 113.61191 * 107.46659 * 10 9 7 13 13 C 1.53783 * 87.01925 * 89.20257 * 12 10 9 14 14 H 1.08998 * 113.61735 * 270.77243 * 13 12 10 15 15 C 1.53003 * 113.61887 * 139.94872 * 13 12 10 16 16 N 1.46499 * 109.46708 * 85.86239 * 15 13 12 17 17 C 1.34784 * 119.99893 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99649 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99774 * 179.72962 * 17 16 15 20 20 C 1.50699 * 109.86777 * 275.69515 * 19 17 16 21 21 C 1.38239 * 120.00500 * 269.02775 * 20 19 17 22 22 C 1.38233 * 120.00037 * 179.76205 * 21 20 19 23 23 C 1.38238 * 119.99907 * 0.49464 * 22 21 20 24 24 C 1.38229 * 120.00191 * 359.78249 * 23 22 21 25 25 C 1.38237 * 119.99729 * 89.30224 * 20 19 17 26 26 C 1.54097 * 109.87541 * 154.69651 * 19 17 16 27 27 C 1.54814 * 104.18582 * 242.59837 * 26 19 17 28 28 C 1.54996 * 102.09000 * 20.88134 * 27 26 19 29 29 O 1.43735 * 109.88526 * 36.70483 * 19 17 16 30 30 C 1.53785 * 87.17467 * 25.36109 * 13 12 10 31 31 H 0.96996 * 120.00327 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00086 * 0.02562 * 9 7 2 33 33 H 1.09002 * 113.66745 * 334.67899 * 12 10 9 34 34 H 1.09000 * 113.61203 * 203.71970 * 12 10 9 35 35 H 1.08998 * 109.46692 * 325.86741 * 15 13 12 36 36 H 1.08994 * 109.47584 * 205.86605 * 15 13 12 37 37 H 0.97005 * 120.00261 * 0.02562 * 16 15 13 38 38 H 1.08000 * 119.99403 * 0.02562 * 21 20 19 39 39 H 1.08006 * 119.99870 * 180.25181 * 22 21 20 40 40 H 1.07996 * 119.99271 * 179.76523 * 23 22 21 41 41 H 1.07998 * 119.99973 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00192 * 0.02562 * 25 20 19 43 43 H 1.09002 * 110.49576 * 1.27298 * 26 19 17 44 44 H 1.08998 * 110.49308 * 123.93052 * 26 19 17 45 45 H 1.09000 * 110.90670 * 139.07863 * 27 26 19 46 46 H 1.08995 * 110.90947 * 262.64715 * 27 26 19 47 47 H 1.09000 * 110.61877 * 81.47577 * 28 27 26 48 48 H 1.08995 * 110.62254 * 204.31484 * 28 27 26 49 49 H 1.08993 * 113.61622 * 89.15643 * 30 13 12 50 50 H 1.08998 * 113.61581 * 220.06334 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0653 -3.5637 -0.4077 12 6 2.0007 -4.4032 1.3436 13 6 0.7227 -5.0809 0.8217 14 1 -0.1887 -4.5277 1.0484 15 6 0.6233 -6.5639 1.1846 16 7 0.0274 -6.7020 2.5157 17 6 -0.1589 -7.9266 3.0470 18 8 0.1674 -8.9142 2.4232 19 6 -0.7663 -8.0683 4.4188 20 6 0.3035 -7.9227 5.4702 21 6 0.9758 -9.0390 5.9316 22 6 1.9604 -8.9047 6.8924 23 6 2.2658 -7.6553 7.3993 24 6 1.5896 -6.5398 6.9420 25 6 0.6086 -6.6734 5.9773 26 6 -1.4467 -9.4446 4.5508 27 6 -2.9407 -9.1090 4.7793 28 6 -3.0383 -7.6662 4.2213 29 8 -1.7796 -7.0671 4.6106 30 6 1.2596 -4.8286 -0.5971 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.8301 -3.7500 2.1994 34 1 2.8302 -5.0937 1.4955 35 1 1.6199 -7.0053 1.1851 36 1 -0.0005 -7.0762 0.4522 37 1 -0.2332 -5.9120 3.0148 38 1 0.7345 -10.0154 5.5383 39 1 2.4885 -9.7764 7.2500 40 1 3.0325 -7.5510 8.1527 41 1 1.8279 -5.5638 7.3383 42 1 0.0800 -5.8019 5.6204 43 1 -1.3212 -10.0219 3.6348 44 1 -1.0434 -9.9894 5.4044 45 1 -3.5822 -9.7877 4.2172 46 1 -3.1870 -9.1336 5.8408 47 1 -3.1375 -7.6804 3.1359 48 1 -3.8748 -7.1349 4.6751 49 1 1.8862 -5.6356 -0.9768 50 1 0.4918 -4.5183 -1.3058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488876463.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:43 Heat of formation + Delta-G solvation = -40.840691 kcal Electronic energy + Delta-G solvation = -30360.063003 eV Core-core repulsion = 26352.182627 eV Total energy + Delta-G solvation = -4007.880376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.11608 -40.36620 -39.62561 -39.10203 -36.10639 -35.01031 -33.66220 -32.97190 -32.04168 -31.72367 -29.51569 -28.46372 -26.46874 -25.85335 -24.96995 -23.88935 -23.39093 -22.77553 -22.09131 -20.98436 -19.86272 -19.35858 -18.67763 -18.45791 -17.55011 -16.98746 -16.70678 -16.57720 -16.18990 -15.95019 -15.74418 -15.67631 -15.63157 -15.09618 -14.80629 -14.64545 -14.57384 -14.26731 -14.09331 -13.75254 -13.63630 -13.31656 -13.07856 -12.97385 -12.93203 -12.81396 -12.66591 -12.26970 -12.24147 -12.14016 -12.05860 -11.90771 -11.80066 -11.69382 -11.51567 -11.43130 -10.99288 -10.86545 -10.59021 -10.13755 -9.86244 -9.72284 -9.01135 -7.96007 -5.24515 0.26480 0.45368 1.43462 1.47743 1.47851 1.58161 2.07824 2.55168 2.55638 2.82171 3.36457 3.42295 3.56550 3.59238 3.69430 3.75501 3.86625 3.98062 4.03688 4.08139 4.11742 4.12937 4.25140 4.29277 4.34544 4.37344 4.55680 4.62161 4.63901 4.68388 4.70702 4.75985 4.87687 4.89511 4.90642 4.95575 5.01146 5.08003 5.08791 5.11343 5.23588 5.31755 5.41998 5.47074 5.51080 5.51995 5.58345 5.63470 5.72453 6.03528 6.27610 6.42263 7.05121 7.32589 8.09120 8.31775 9.27499 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.002567 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.956146 B =10906.238373 C =11583.254374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.146 3.854 11 H 0.061 0.939 12 C -0.153 4.153 13 C -0.103 4.103 14 H 0.078 0.922 15 C 0.138 3.862 16 N -0.707 5.707 17 C 0.506 3.494 18 O -0.568 6.568 19 C 0.137 3.863 20 C -0.100 4.100 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.130 4.130 25 C -0.105 4.105 26 C -0.142 4.142 27 C -0.144 4.144 28 C 0.033 3.967 29 O -0.367 6.367 30 C -0.132 4.132 31 H 0.251 0.749 32 H 0.374 0.626 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.409 0.591 38 H 0.137 0.863 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.137 0.863 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.118 0.882 49 H 0.106 0.894 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 -22.639 15.052 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.036 3.964 11 H 0.079 0.921 12 C -0.194 4.194 13 C -0.122 4.122 14 H 0.097 0.903 15 C 0.015 3.985 16 N -0.357 5.357 17 C 0.292 3.708 18 O -0.449 6.449 19 C 0.093 3.907 20 C -0.100 4.100 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.134 4.134 24 C -0.148 4.148 25 C -0.124 4.124 26 C -0.180 4.180 27 C -0.181 4.181 28 C -0.043 4.043 29 O -0.286 6.286 30 C -0.172 4.172 31 H 0.060 0.940 32 H 0.206 0.794 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.245 0.755 38 H 0.154 0.846 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.155 0.845 42 H 0.139 0.861 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.111 0.889 47 H 0.076 0.924 48 H 0.136 0.864 49 H 0.125 0.875 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.726 -22.961 14.642 27.287 hybrid contribution -0.337 1.551 -0.123 1.592 sum -2.063 -21.410 14.519 25.951 Atomic orbital electron populations 1.69816 1.06574 1.26009 1.59539 1.25549 0.96385 1.01045 1.03732 0.85088 0.78283 0.79871 0.76619 1.19030 1.22084 1.22087 1.19703 0.91518 0.85152 1.40971 0.90559 1.42313 1.05330 1.00577 1.87563 1.21399 0.95109 0.84916 0.94993 0.92072 1.23731 0.97203 0.99202 0.99253 1.22485 0.98303 0.93523 0.97841 0.90320 1.21363 0.98210 0.95783 0.83118 1.46013 1.61867 1.08527 1.19254 1.21175 0.78451 0.83122 0.88046 1.90651 1.52937 1.38409 1.62857 1.20884 0.89104 0.91330 0.89335 1.19459 0.97866 0.94896 0.97789 1.21271 0.96452 0.98222 0.97339 1.21456 0.97256 0.98720 0.96694 1.21569 0.99561 0.92382 0.99850 1.21449 0.96021 1.00149 0.97215 1.21102 0.97346 0.96857 0.97052 1.23124 0.95948 0.94036 1.04872 1.23146 0.95105 0.96395 1.03453 1.23940 0.86444 0.94204 0.99721 1.89000 1.16903 1.35997 1.86717 1.23336 0.99976 0.98668 0.95176 0.94012 0.79377 0.93535 0.89269 0.91416 0.91601 0.75514 0.84572 0.83233 0.83478 0.84470 0.86115 0.89672 0.87868 0.88083 0.88937 0.92410 0.86373 0.87544 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 2 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 3 Si 0.97 46.00 29.55 68.60 2.03 48.02 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.24 -13.37 9.97 84.03 0.84 -12.53 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.72 -36.02 5.31 -320.16 -1.70 -37.72 16 10 C 0.15 5.66 4.57 45.58 0.21 5.87 16 11 H 0.06 2.37 8.10 -2.39 -0.02 2.35 16 12 C -0.15 -5.10 7.44 31.18 0.23 -4.87 16 13 C -0.10 -3.10 3.63 -10.26 -0.04 -3.13 16 14 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 15 C 0.14 3.76 5.50 86.38 0.47 4.24 16 16 N -0.71 -19.01 5.47 -463.06 -2.53 -21.55 16 17 C 0.51 14.05 6.65 87.65 0.58 14.63 16 18 O -0.57 -18.63 15.57 -3.04 -0.05 -18.68 16 19 C 0.14 3.09 0.91 -11.92 -0.01 3.08 16 20 C -0.10 -2.23 4.84 -19.86 -0.10 -2.33 16 21 C -0.11 -2.22 8.73 22.27 0.19 -2.02 16 22 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 23 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 24 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 25 C -0.11 -2.38 9.36 22.27 0.21 -2.17 16 26 C -0.14 -2.58 5.63 31.58 0.18 -2.40 16 27 C -0.14 -1.94 7.15 31.90 0.23 -1.72 16 28 C 0.03 0.55 7.66 72.67 0.56 1.11 16 29 O -0.37 -8.21 9.33 -148.98 -1.39 -9.60 16 30 C -0.13 -4.13 7.39 31.12 0.23 -3.90 16 31 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.37 20.06 7.90 -92.71 -0.73 19.32 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 34 H 0.09 2.59 7.92 -2.39 -0.02 2.58 16 35 H 0.07 1.86 7.87 -2.39 -0.02 1.84 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.41 10.75 7.98 -92.70 -0.74 10.01 16 38 H 0.14 2.28 6.43 -2.91 -0.02 2.26 16 39 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.12 2.82 7.55 -2.91 -0.02 2.80 16 43 H 0.08 1.78 6.73 -2.39 -0.02 1.76 16 44 H 0.10 1.57 5.76 -2.39 -0.01 1.56 16 45 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.12 1.53 8.14 -2.39 -0.02 1.52 16 49 H 0.11 2.73 8.10 -2.39 -0.02 2.71 16 50 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -69.20 404.49 1.05 -68.16 By element: Atomic # 1 Polarization: 46.27 SS G_CDS: -0.52 Total: 45.75 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 4.93 Total: -15.67 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -3.95 Total: -117.98 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -1.44 Total: -28.28 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -69.20 1.05 -68.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488876463.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.319 kcal (2) G-P(sol) polarization free energy of solvation -69.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds