Wall clock time and date at job start Wed Apr 1 2020 02:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48496 * 109.47403 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47341 * 300.00627 * 3 2 1 6 6 H 1.48503 * 109.47107 * 60.00200 * 3 2 1 7 7 C 1.38808 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99890 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99886 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47131 * 174.96595 * 10 9 7 12 12 H 1.09007 * 109.58413 * 308.34017 * 11 10 9 13 13 C 1.53196 * 109.58771 * 187.91405 * 11 10 9 14 14 C 1.53040 * 109.31043 * 185.57594 * 13 11 10 15 15 C 1.53045 * 109.54091 * 61.36666 * 14 13 11 16 16 C 1.53626 * 109.23990 * 298.51037 * 15 14 13 17 17 N 1.46922 * 108.54121 * 54.85251 * 16 15 14 18 18 C 1.34785 * 120.62697 * 126.37017 * 17 16 15 19 19 O 1.21276 * 119.99749 * 185.65536 * 18 17 16 20 20 C 1.50696 * 120.00109 * 5.65700 * 18 17 16 21 21 H 1.08996 * 109.33565 * 324.80347 * 20 18 17 22 22 O 1.42720 * 109.34129 * 205.12446 * 20 18 17 23 23 C 1.43212 * 113.11617 * 188.14519 * 22 20 18 24 24 C 1.52977 * 108.47316 * 70.72437 * 23 22 20 25 25 C 1.50739 * 109.76771 * 310.83364 * 24 23 22 26 26 C 1.38591 * 118.77214 * 196.77549 * 25 24 23 27 27 C 1.38062 * 120.28177 * 180.19525 * 26 25 24 28 28 C 1.38262 * 119.86527 * 359.97438 * 27 26 25 29 29 C 1.38053 * 119.89430 * 359.93337 * 28 27 26 30 30 C 1.37589 * 121.26601 * 16.79564 * 25 24 23 31 31 H 0.97002 * 120.00003 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99758 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47387 * 54.96257 * 10 9 7 34 34 H 1.09005 * 109.46976 * 294.96542 * 10 9 7 35 35 H 1.08993 * 109.49601 * 305.52472 * 13 11 10 36 36 H 1.08996 * 109.49570 * 65.62840 * 13 11 10 37 37 H 1.09003 * 109.46058 * 181.38611 * 14 13 11 38 38 H 1.09001 * 109.46069 * 301.35807 * 14 13 11 39 39 H 1.08995 * 109.49280 * 58.58188 * 15 14 13 40 40 H 1.08996 * 109.49976 * 178.64606 * 15 14 13 41 41 H 1.08998 * 109.73430 * 295.11715 * 16 15 14 42 42 H 1.08991 * 109.66374 * 174.54489 * 16 15 14 43 43 H 1.09002 * 109.63765 * 190.41918 * 23 22 20 44 44 H 1.09001 * 109.63722 * 311.02814 * 23 22 20 45 45 H 1.08998 * 109.42153 * 70.92937 * 24 23 22 46 46 H 1.08997 * 109.41840 * 190.74268 * 24 23 22 47 47 H 1.08006 * 119.85983 * 0.17606 * 26 25 24 48 48 H 1.08001 * 120.07086 * 180.02562 * 27 26 25 49 49 H 1.07997 * 120.05611 * 179.90633 * 28 27 26 50 50 H 1.07993 * 119.85427 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0687 -4.8170 0.1228 12 1 0.4101 -4.6451 0.9742 13 6 1.8367 -6.1278 0.3203 14 6 0.8515 -7.2987 0.3057 15 6 0.1421 -7.3540 -1.0493 16 6 -0.6492 -6.0542 -1.2598 17 7 0.2693 -4.9179 -1.1058 18 6 0.3725 -3.9826 -2.0709 19 8 1.2063 -3.1067 -1.9797 20 6 -0.5482 -4.0254 -3.2631 21 1 -0.7498 -5.0637 -3.5264 22 8 0.0767 -3.3708 -4.3667 23 6 -0.7978 -3.2001 -5.4878 24 6 -1.8442 -2.1432 -5.1298 25 6 -2.4513 -2.4611 -3.7872 26 6 -3.6447 -1.8516 -3.4336 27 6 -4.2262 -2.1172 -2.2098 28 6 -3.6157 -2.9953 -1.3336 29 6 -2.4279 -3.6044 -1.6858 30 6 -1.8435 -3.3377 -2.9182 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.7507 -3.6772 0.8387 34 1 2.6154 -3.7537 -0.9345 35 1 2.5598 -6.2507 -0.4860 36 1 2.3584 -6.1031 1.2770 37 1 1.3924 -8.2306 0.4706 38 1 0.1137 -7.1624 1.0964 39 1 0.8812 -7.4654 -1.8425 40 1 -0.5419 -8.2025 -1.0675 41 1 -1.4452 -5.9837 -0.5185 42 1 -1.0782 -6.0441 -2.2617 43 1 -0.2237 -2.8688 -6.3531 44 1 -1.2933 -4.1445 -5.7130 45 1 -1.3701 -1.1625 -5.0902 46 1 -2.6265 -2.1361 -5.8888 47 1 -4.1218 -1.1657 -4.1180 48 1 -5.1565 -1.6406 -1.9379 49 1 -4.0671 -3.2041 -0.3749 50 1 -1.9515 -4.2898 -1.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491259358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:51 Heat of formation + Delta-G solvation = 11.292024 kcal Electronic energy + Delta-G solvation = -32977.030494 eV Core-core repulsion = 28971.410762 eV Total energy + Delta-G solvation = -4005.619732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.78954 -39.34548 -37.43960 -36.58567 -34.52992 -33.11176 -32.47173 -31.93249 -31.09012 -29.73556 -29.28310 -26.56658 -25.52857 -24.29988 -23.70986 -22.88544 -22.24952 -21.18501 -20.59232 -19.88330 -18.69827 -17.39726 -16.81332 -16.39956 -16.30237 -15.44419 -15.28034 -15.02068 -14.68021 -14.52473 -14.38363 -14.21427 -13.69963 -13.54049 -13.50119 -13.29201 -13.06832 -12.82086 -12.80589 -12.32416 -12.17477 -12.11393 -12.07769 -11.75109 -11.59252 -11.52509 -11.03673 -10.92761 -10.76402 -10.67932 -10.65454 -10.55257 -10.45687 -10.24747 -9.77615 -9.45569 -9.43095 -8.73653 -8.57953 -8.41242 -8.04930 -7.97307 -6.42310 -5.45992 -2.66082 1.56645 1.66764 3.13854 3.35565 3.60196 3.64913 3.67027 4.00988 4.16892 4.68932 4.74895 4.80981 4.85952 4.87657 4.94675 4.97671 5.03521 5.18906 5.21218 5.27427 5.30054 5.36454 5.43201 5.52760 5.56221 5.64141 5.65109 5.80160 5.84394 5.85679 5.89819 5.91676 5.98595 6.02850 6.03811 6.10331 6.17972 6.23749 6.31638 6.39498 6.60349 6.67065 6.71406 6.77416 6.79503 6.97044 7.21968 7.26546 7.35263 7.95510 7.96686 8.70804 9.01510 9.82614 10.42113 10.76388 11.77189 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007408 B = 0.006504 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3778.692401 B = 4303.850257 C = 6425.421109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.019 4.019 3 Si 0.898 3.102 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.207 4.207 8 H 0.064 0.936 9 N -0.695 5.695 10 C 0.158 3.842 11 C 0.145 3.855 12 H 0.068 0.932 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.134 4.134 16 C 0.104 3.896 17 N -0.616 5.616 18 C 0.483 3.517 19 O -0.412 6.412 20 C 0.120 3.880 21 H 0.078 0.922 22 O -0.346 6.346 23 C 0.061 3.939 24 C -0.116 4.116 25 C -0.064 4.064 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.115 4.115 29 C -0.103 4.103 30 C -0.102 4.102 31 H 0.247 0.753 32 H 0.379 0.621 33 H 0.015 0.985 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 -16.649 -7.103 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.214 4.214 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.339 4.339 8 H 0.082 0.918 9 N -0.339 5.339 10 C 0.031 3.969 11 C 0.042 3.958 12 H 0.086 0.914 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.172 4.172 16 C -0.019 4.019 17 N -0.357 5.357 18 C 0.266 3.734 19 O -0.277 6.277 20 C 0.058 3.942 21 H 0.096 0.904 22 O -0.263 6.263 23 C -0.016 4.016 24 C -0.153 4.153 25 C -0.065 4.065 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.134 4.134 29 C -0.121 4.121 30 C -0.103 4.103 31 H 0.057 0.943 32 H 0.213 0.787 33 H 0.033 0.967 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.430 -15.904 -7.082 18.929 hybrid contribution -0.376 1.027 0.003 1.094 sum -7.806 -14.877 -7.080 18.231 Atomic orbital electron populations 1.69676 1.04804 1.24522 1.59264 1.24590 0.95403 0.97052 1.04363 0.86205 0.78780 0.85069 0.76800 1.20873 1.22362 1.22434 1.19164 0.90690 0.84275 1.39818 0.91761 1.42260 1.05329 0.99674 1.86592 1.20926 0.92986 0.84904 0.98126 1.21492 0.93002 0.95595 0.85723 0.91383 1.21908 0.98107 0.94159 1.02420 1.21492 0.98602 0.98310 0.97052 1.21996 0.99803 0.97024 0.98377 1.21866 0.92230 0.85973 1.01850 1.47814 1.43895 1.24760 1.19193 1.19651 0.87025 0.82764 0.83968 1.91139 1.31980 1.32008 1.72568 1.20806 0.89907 0.95076 0.88362 0.90438 1.88203 1.35742 1.79676 1.22708 1.22638 0.92282 0.97414 0.89303 1.21131 0.98668 1.01288 0.94214 1.19267 0.94832 0.96352 0.96003 1.20924 0.95620 0.99964 0.97302 1.21035 0.99950 0.97976 0.94068 1.20996 0.95867 0.97393 0.99096 1.21357 0.95403 1.00140 0.95219 1.19721 0.95589 0.99441 0.95534 0.94299 0.78683 0.96734 0.94138 0.91480 0.90897 0.92025 0.91877 0.91495 0.91213 0.91587 0.90214 0.88153 0.92963 0.89358 0.90035 0.86347 0.86312 0.86181 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.16 13.06 55.49 0.72 -29.44 16 2 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 3 Si 0.90 24.47 29.55 -169.99 -5.02 19.45 16 4 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.30 -8.17 7.11 56.52 0.40 -7.77 16 6 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 7 C -0.21 -6.34 9.70 -15.06 -0.15 -6.48 16 8 H 0.06 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.70 -19.06 3.21 -59.91 -0.19 -19.25 16 10 C 0.16 3.51 4.87 -4.04 -0.02 3.49 16 11 C 0.14 2.45 2.93 -67.60 -0.20 2.26 16 12 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 13 C -0.13 -1.64 5.37 -26.61 -0.14 -1.78 16 14 C -0.12 -1.17 5.88 -26.69 -0.16 -1.33 16 15 C -0.13 -1.27 6.10 -26.38 -0.16 -1.43 16 16 C 0.10 1.20 4.59 -3.49 -0.02 1.19 16 17 N -0.62 -9.96 2.38 -164.96 -0.39 -10.35 16 18 C 0.48 9.68 5.60 -10.98 -0.06 9.62 16 19 O -0.41 -10.58 10.42 -13.08 -0.14 -10.72 16 20 C 0.12 2.07 2.51 -29.06 -0.07 2.00 16 21 H 0.08 1.08 6.01 -51.93 -0.31 0.77 16 22 O -0.35 -6.43 10.09 -53.87 -0.54 -6.97 16 23 C 0.06 0.81 6.85 37.15 0.25 1.07 16 24 C -0.12 -1.61 6.00 -27.88 -0.17 -1.78 16 25 C -0.06 -1.06 5.77 -104.71 -0.60 -1.66 16 26 C -0.12 -1.82 9.67 -39.52 -0.38 -2.20 16 27 C -0.11 -1.67 10.05 -39.64 -0.40 -2.06 16 28 C -0.12 -1.80 10.05 -39.64 -0.40 -2.20 16 29 C -0.10 -1.73 8.79 -39.37 -0.35 -2.07 16 30 C -0.10 -1.78 5.45 -104.60 -0.57 -2.35 16 31 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 32 H 0.38 11.03 6.99 -40.82 -0.29 10.74 16 33 H 0.02 0.33 8.13 -51.93 -0.42 -0.09 16 34 H 0.04 0.99 6.37 -51.93 -0.33 0.66 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.71 7.12 -51.93 -0.37 0.34 16 42 H 0.08 0.84 5.31 -51.93 -0.28 0.57 16 43 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.57 8.07 -51.93 -0.42 0.15 16 45 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 48 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 49 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 50 H 0.13 2.03 3.98 -52.49 -0.21 1.82 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -37.64 379.43 -11.20 -48.83 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.67 Total: 9.16 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -3.68 Total: -6.43 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.14 Total: -59.04 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.68 Total: -17.69 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.02 Total: 19.45 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.64 -11.20 -48.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491259358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.125 kcal (2) G-P(sol) polarization free energy of solvation -37.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds