Wall clock time and date at job start Wed Apr 1 2020 02:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48496 * 109.47403 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47341 * 300.00627 * 3 2 1 6 6 H 1.48503 * 109.47107 * 60.00200 * 3 2 1 7 7 C 1.38808 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99890 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99886 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47131 * 174.96595 * 10 9 7 12 12 H 1.09007 * 109.58413 * 308.34017 * 11 10 9 13 13 C 1.53196 * 109.58771 * 187.91405 * 11 10 9 14 14 C 1.53040 * 109.31043 * 185.57594 * 13 11 10 15 15 C 1.53045 * 109.54091 * 61.36666 * 14 13 11 16 16 C 1.53626 * 109.23990 * 298.51037 * 15 14 13 17 17 N 1.46922 * 108.54121 * 54.85251 * 16 15 14 18 18 C 1.34785 * 120.62697 * 126.37017 * 17 16 15 19 19 O 1.21276 * 119.99749 * 185.65536 * 18 17 16 20 20 C 1.50696 * 120.00109 * 5.65700 * 18 17 16 21 21 H 1.08996 * 109.33565 * 324.80347 * 20 18 17 22 22 O 1.42720 * 109.34129 * 205.12446 * 20 18 17 23 23 C 1.43212 * 113.11617 * 188.14519 * 22 20 18 24 24 C 1.52977 * 108.47316 * 70.72437 * 23 22 20 25 25 C 1.50739 * 109.76771 * 310.83364 * 24 23 22 26 26 C 1.38591 * 118.77214 * 196.77549 * 25 24 23 27 27 C 1.38062 * 120.28177 * 180.19525 * 26 25 24 28 28 C 1.38262 * 119.86527 * 359.97438 * 27 26 25 29 29 C 1.38053 * 119.89430 * 359.93337 * 28 27 26 30 30 C 1.37589 * 121.26601 * 16.79564 * 25 24 23 31 31 H 0.97002 * 120.00003 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99758 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47387 * 54.96257 * 10 9 7 34 34 H 1.09005 * 109.46976 * 294.96542 * 10 9 7 35 35 H 1.08993 * 109.49601 * 305.52472 * 13 11 10 36 36 H 1.08996 * 109.49570 * 65.62840 * 13 11 10 37 37 H 1.09003 * 109.46058 * 181.38611 * 14 13 11 38 38 H 1.09001 * 109.46069 * 301.35807 * 14 13 11 39 39 H 1.08995 * 109.49280 * 58.58188 * 15 14 13 40 40 H 1.08996 * 109.49976 * 178.64606 * 15 14 13 41 41 H 1.08998 * 109.73430 * 295.11715 * 16 15 14 42 42 H 1.08991 * 109.66374 * 174.54489 * 16 15 14 43 43 H 1.09002 * 109.63765 * 190.41918 * 23 22 20 44 44 H 1.09001 * 109.63722 * 311.02814 * 23 22 20 45 45 H 1.08998 * 109.42153 * 70.92937 * 24 23 22 46 46 H 1.08997 * 109.41840 * 190.74268 * 24 23 22 47 47 H 1.08006 * 119.85983 * 0.17606 * 26 25 24 48 48 H 1.08001 * 120.07086 * 180.02562 * 27 26 25 49 49 H 1.07997 * 120.05611 * 179.90633 * 28 27 26 50 50 H 1.07993 * 119.85427 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0687 -4.8170 0.1228 12 1 0.4101 -4.6451 0.9742 13 6 1.8367 -6.1278 0.3203 14 6 0.8515 -7.2987 0.3057 15 6 0.1421 -7.3540 -1.0493 16 6 -0.6492 -6.0542 -1.2598 17 7 0.2693 -4.9179 -1.1058 18 6 0.3725 -3.9826 -2.0709 19 8 1.2063 -3.1067 -1.9797 20 6 -0.5482 -4.0254 -3.2631 21 1 -0.7498 -5.0637 -3.5264 22 8 0.0767 -3.3708 -4.3667 23 6 -0.7978 -3.2001 -5.4878 24 6 -1.8442 -2.1432 -5.1298 25 6 -2.4513 -2.4611 -3.7872 26 6 -3.6447 -1.8516 -3.4336 27 6 -4.2262 -2.1172 -2.2098 28 6 -3.6157 -2.9953 -1.3336 29 6 -2.4279 -3.6044 -1.6858 30 6 -1.8435 -3.3377 -2.9182 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.7507 -3.6772 0.8387 34 1 2.6154 -3.7537 -0.9345 35 1 2.5598 -6.2507 -0.4860 36 1 2.3584 -6.1031 1.2770 37 1 1.3924 -8.2306 0.4706 38 1 0.1137 -7.1624 1.0964 39 1 0.8812 -7.4654 -1.8425 40 1 -0.5419 -8.2025 -1.0675 41 1 -1.4452 -5.9837 -0.5185 42 1 -1.0782 -6.0441 -2.2617 43 1 -0.2237 -2.8688 -6.3531 44 1 -1.2933 -4.1445 -5.7130 45 1 -1.3701 -1.1625 -5.0902 46 1 -2.6265 -2.1361 -5.8888 47 1 -4.1218 -1.1657 -4.1180 48 1 -5.1565 -1.6406 -1.9379 49 1 -4.0671 -3.2041 -0.3749 50 1 -1.9515 -4.2898 -1.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491259358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:49 Heat of formation + Delta-G solvation = -12.303697 kcal Electronic energy + Delta-G solvation = -32978.053681 eV Core-core repulsion = 28971.410762 eV Total energy + Delta-G solvation = -4006.642919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.10493 -40.61503 -38.66920 -37.90277 -36.39365 -34.53432 -33.64323 -33.57715 -32.36405 -31.47146 -30.45139 -27.95771 -27.07485 -25.70517 -24.83538 -24.39681 -23.74409 -22.58505 -21.72322 -21.02120 -20.06903 -19.16061 -18.36805 -17.79564 -17.57314 -16.67212 -16.66220 -16.48270 -16.22594 -15.78678 -15.60784 -15.46073 -15.25070 -15.04381 -14.76586 -14.65627 -14.45688 -14.24923 -14.05584 -13.66786 -13.58806 -13.46083 -13.40659 -13.13619 -12.87994 -12.82991 -12.70826 -12.64845 -12.18712 -12.07625 -11.95053 -11.83899 -11.69254 -11.57087 -11.48079 -11.32721 -10.89133 -10.66064 -10.07936 -9.62987 -9.47156 -9.39183 -8.60736 -7.82722 -5.01365 0.34779 0.46517 1.39095 1.42314 1.51178 1.82960 1.92683 2.60051 2.80534 2.99128 3.49051 3.54788 3.55876 3.73991 3.84530 3.85356 3.89834 3.96216 4.10013 4.15477 4.16018 4.24689 4.27489 4.34845 4.41327 4.49794 4.53914 4.56953 4.60499 4.73235 4.75033 4.81999 4.88407 4.92155 4.99449 5.06446 5.07072 5.13209 5.17053 5.17609 5.26692 5.34375 5.49240 5.51048 5.54724 5.59227 5.59891 5.81111 6.05920 6.10189 6.36796 6.59717 7.43263 7.54868 8.23819 8.46854 9.40698 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007408 B = 0.006504 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3778.692401 B = 4303.850257 C = 6425.421109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.081 4.081 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.302 1.302 6 H -0.290 1.290 7 C -0.212 4.212 8 H 0.058 0.942 9 N -0.701 5.701 10 C 0.160 3.840 11 C 0.149 3.851 12 H 0.065 0.935 13 C -0.119 4.119 14 C -0.112 4.112 15 C -0.127 4.127 16 C 0.095 3.905 17 N -0.608 5.608 18 C 0.482 3.518 19 O -0.488 6.488 20 C 0.124 3.876 21 H 0.112 0.888 22 O -0.387 6.387 23 C 0.055 3.945 24 C -0.114 4.114 25 C -0.086 4.086 26 C -0.128 4.128 27 C -0.118 4.118 28 C -0.130 4.130 29 C -0.120 4.120 30 C -0.125 4.125 31 H 0.241 0.759 32 H 0.368 0.632 33 H 0.014 0.986 34 H 0.017 0.983 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.120 0.880 47 H 0.144 0.856 48 H 0.146 0.854 49 H 0.138 0.862 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 -18.897 -7.525 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.272 4.272 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.230 1.230 6 H -0.217 1.217 7 C -0.345 4.345 8 H 0.076 0.924 9 N -0.342 5.342 10 C 0.034 3.966 11 C 0.046 3.954 12 H 0.083 0.917 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.165 4.165 16 C -0.026 4.026 17 N -0.347 5.347 18 C 0.267 3.733 19 O -0.358 6.358 20 C 0.063 3.937 21 H 0.129 0.871 22 O -0.305 6.305 23 C -0.021 4.021 24 C -0.151 4.151 25 C -0.086 4.086 26 C -0.146 4.146 27 C -0.136 4.136 28 C -0.148 4.148 29 C -0.137 4.137 30 C -0.126 4.126 31 H 0.050 0.950 32 H 0.199 0.801 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.137 0.863 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.138 0.862 47 H 0.161 0.839 48 H 0.164 0.836 49 H 0.156 0.844 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.833 -18.242 -7.492 21.608 hybrid contribution 0.038 1.638 0.088 1.641 sum -8.795 -16.604 -7.404 20.196 Atomic orbital electron populations 1.69840 1.06051 1.24659 1.61038 1.25322 0.96376 1.00169 1.05378 0.85206 0.78089 0.80974 0.76443 1.19756 1.22976 1.21680 1.19464 0.90642 0.85943 1.38424 0.92396 1.42291 1.04715 1.00533 1.86652 1.20946 0.94009 0.85129 0.96542 1.21385 0.92347 0.95690 0.85977 0.91737 1.21862 0.98333 0.92971 1.02608 1.21496 0.98175 0.97604 0.97644 1.21991 1.00031 0.96575 0.97891 1.22240 0.92050 0.85194 1.03103 1.47920 1.43791 1.25137 1.17853 1.20367 0.86042 0.82069 0.84803 1.91102 1.35046 1.34847 1.74786 1.20816 0.88939 0.96807 0.87119 0.87071 1.88148 1.37970 1.80236 1.24158 1.22961 0.92123 0.98806 0.88223 1.21185 0.99663 1.00033 0.94246 1.19695 0.95522 0.96275 0.97128 1.21311 0.95344 0.99972 0.97997 1.21440 1.00848 0.97475 0.93797 1.21339 0.95786 0.97508 1.00131 1.21528 0.96086 1.00877 0.95250 1.19897 0.95791 1.00585 0.96327 0.94975 0.80053 0.96784 0.96486 0.92251 0.89967 0.89587 0.91028 0.91913 0.87755 0.90165 0.89065 0.86338 0.90012 0.91813 0.86226 0.83852 0.83619 0.84398 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.46 13.06 21.65 0.28 -64.18 16 2 C -0.08 -5.21 5.50 84.86 0.47 -4.74 16 3 Si 0.96 51.92 29.55 68.60 2.03 53.95 16 4 H -0.27 -14.05 7.11 99.48 0.71 -13.34 16 5 H -0.30 -16.44 7.11 99.48 0.71 -15.74 16 6 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 7 C -0.21 -13.47 9.70 84.03 0.81 -12.65 16 8 H 0.06 3.66 7.83 -2.91 -0.02 3.63 16 9 N -0.70 -40.27 3.21 -343.45 -1.10 -41.37 16 10 C 0.16 7.44 4.87 86.38 0.42 7.87 16 11 C 0.15 5.09 2.93 44.97 0.13 5.22 16 12 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 13 C -0.12 -2.89 5.37 30.67 0.16 -2.73 16 14 C -0.11 -1.84 5.88 30.62 0.18 -1.66 16 15 C -0.13 -1.95 6.10 30.82 0.19 -1.77 16 16 C 0.10 1.99 4.59 86.51 0.40 2.39 16 17 N -0.61 -19.58 2.38 -794.21 -1.89 -21.47 16 18 C 0.48 19.92 5.60 87.65 0.49 20.41 16 19 O -0.49 -26.46 10.42 14.80 0.15 -26.31 16 20 C 0.12 4.30 2.51 29.09 0.07 4.38 16 21 H 0.11 2.94 6.01 -2.39 -0.01 2.92 16 22 O -0.39 -14.62 10.09 -131.16 -1.32 -15.94 16 23 C 0.05 1.41 6.85 71.97 0.49 1.90 16 24 C -0.11 -3.08 6.00 29.85 0.18 -2.90 16 25 C -0.09 -2.80 5.77 -19.92 -0.11 -2.91 16 26 C -0.13 -3.74 9.67 22.31 0.22 -3.52 16 27 C -0.12 -3.35 10.05 22.23 0.22 -3.12 16 28 C -0.13 -3.96 10.05 22.23 0.22 -3.74 16 29 C -0.12 -3.98 8.79 22.40 0.20 -3.78 16 30 C -0.13 -4.37 5.45 -19.85 -0.11 -4.48 16 31 H 0.24 15.73 8.31 -92.71 -0.77 14.96 16 32 H 0.37 22.43 6.99 -92.71 -0.65 21.78 16 33 H 0.01 0.66 8.13 -2.39 -0.02 0.64 16 34 H 0.02 0.90 6.37 -2.38 -0.02 0.88 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.50 7.12 -2.39 -0.02 1.49 16 42 H 0.09 1.71 5.31 -2.39 -0.01 1.69 16 43 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.08 1.60 8.07 -2.39 -0.02 1.58 16 45 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 48 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 49 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 50 H 0.13 4.12 3.98 -2.91 -0.01 4.10 16 Total: -1.00 -87.66 379.43 3.09 -84.57 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.30 Total: 36.61 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.64 Total: -5.85 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -2.71 Total: -127.03 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -1.17 Total: -42.25 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.03 Total: 53.95 kcal Total: -87.66 3.09 -84.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491259358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.267 kcal (2) G-P(sol) polarization free energy of solvation -87.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds