Wall clock time and date at job start Wed Apr 1 2020 02:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00391 * 2 1 4 4 H 1.48498 * 109.46885 * 239.99873 * 3 2 1 5 5 H 1.48504 * 109.46784 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47011 * 120.00008 * 3 2 1 7 7 C 1.38821 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99911 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99803 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64733 * 14.73325 * 9 7 2 11 11 C 1.54916 * 104.82853 * 155.89387 * 10 9 7 12 12 C 1.55156 * 101.58260 * 37.00852 * 11 10 9 13 13 C 1.47017 * 125.64974 * 194.76128 * 9 7 2 14 14 H 1.09001 * 110.00805 * 300.52857 * 13 9 7 15 15 C 1.53002 * 109.88154 * 61.61591 * 13 9 7 16 16 N 1.46500 * 109.46852 * 182.39863 * 15 13 9 17 17 C 1.34777 * 119.99657 * 185.14158 * 16 15 13 18 18 O 1.21278 * 120.00517 * 359.72054 * 17 16 15 19 19 C 1.50708 * 119.99908 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.47147 * 179.72350 * 19 17 16 21 21 H 1.08998 * 109.33928 * 304.99808 * 20 19 17 22 22 O 1.42729 * 109.34075 * 64.67483 * 20 19 17 23 23 C 1.43215 * 113.11262 * 172.00957 * 22 20 19 24 24 C 1.52966 * 108.47731 * 289.27967 * 23 22 20 25 25 C 1.50743 * 109.77032 * 49.16328 * 24 23 22 26 26 C 1.38591 * 118.76938 * 163.22602 * 25 24 23 27 27 C 1.38069 * 120.27844 * 179.85288 * 26 25 24 28 28 C 1.38261 * 119.86276 * 359.96079 * 27 26 25 29 29 C 1.38048 * 119.89521 * 0.07470 * 28 27 26 30 30 C 1.37679 * 121.28750 * 343.02534 * 25 24 23 31 31 H 0.97001 * 119.99867 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.36701 * 37.05777 * 10 9 7 33 33 H 1.08999 * 110.46198 * 274.77497 * 10 9 7 34 34 H 1.09000 * 111.00265 * 278.93666 * 11 10 9 35 35 H 1.08998 * 111.00019 * 155.08672 * 11 10 9 36 36 H 1.08996 * 110.72070 * 206.13233 * 12 11 10 37 37 H 1.09004 * 110.71696 * 82.85901 * 12 11 10 38 38 H 1.09002 * 109.46682 * 62.40560 * 15 13 9 39 39 H 1.08995 * 109.47437 * 302.39691 * 15 13 9 40 40 H 0.96997 * 120.00428 * 5.13345 * 16 15 13 41 41 H 1.09008 * 109.46468 * 299.72024 * 19 17 16 42 42 H 1.09002 * 109.47120 * 59.71804 * 19 17 16 43 43 H 1.09003 * 109.63286 * 48.97703 * 23 22 20 44 44 H 1.09002 * 109.63452 * 169.37330 * 23 22 20 45 45 H 1.08998 * 109.42325 * 169.25882 * 24 23 22 46 46 H 1.09007 * 109.41982 * 289.06960 * 24 23 22 47 47 H 1.07995 * 119.86166 * 359.82550 * 26 25 24 48 48 H 1.07996 * 120.07292 * 179.97438 * 27 26 25 49 49 H 1.08002 * 120.05382 * 180.09725 * 28 27 26 50 50 H 1.08008 * 119.85277 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1074 -2.5529 -0.3047 11 6 -0.2462 -4.0223 -0.7753 12 6 0.7638 -4.7442 0.1555 13 6 1.8973 -3.7078 0.3054 14 1 2.7027 -3.9356 -0.3928 15 6 2.4316 -3.7247 1.7390 16 7 3.0502 -5.0239 2.0143 17 6 3.4998 -5.3072 3.2528 18 8 3.3970 -4.4848 4.1383 19 6 4.1367 -6.6435 3.5359 20 6 4.5622 -6.7048 5.0042 21 1 5.2099 -5.8572 5.2281 22 8 3.4032 -6.6464 5.8351 23 6 3.6908 -6.8802 7.2185 24 6 4.0517 -8.3560 7.3959 25 6 5.0819 -8.7558 6.3706 26 6 5.7997 -9.9250 6.5670 27 6 6.7487 -10.3223 5.6462 28 6 6.9834 -9.5509 4.5230 29 6 6.2694 -8.3858 4.3270 30 6 5.3141 -7.9865 5.2527 31 1 -0.4850 0.8401 -0.0004 32 1 -0.4069 -1.8700 -1.0998 33 1 -0.7092 -2.3821 0.5879 34 1 0.0429 -4.1266 -1.8210 35 1 -1.2592 -4.3905 -0.6130 36 1 1.1346 -5.6565 -0.3116 37 1 0.3097 -4.9617 1.1223 38 1 1.6094 -3.5590 2.4352 39 1 3.1742 -2.9360 1.8594 40 1 3.1361 -5.6802 1.3052 41 1 3.4192 -7.4383 3.3320 42 1 5.0115 -6.7713 2.8984 43 1 4.5304 -6.2579 7.5283 44 1 2.8146 -6.6392 7.8205 45 1 4.4559 -8.5127 8.3960 46 1 3.1573 -8.9658 7.2679 47 1 5.6162 -10.5277 7.4442 48 1 7.3063 -11.2338 5.8027 49 1 7.7239 -9.8596 3.7999 50 1 6.4536 -7.7835 3.4496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493151284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:27 Heat of formation + Delta-G solvation = -58.413512 kcal Electronic energy + Delta-G solvation = -29932.448270 eV Core-core repulsion = 25923.805879 eV Total energy + Delta-G solvation = -4008.642390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.56705 -40.51404 -39.24584 -38.38302 -35.69210 -34.74377 -34.38865 -33.19579 -31.55354 -31.09190 -30.36133 -29.19143 -26.74985 -25.93096 -24.90081 -24.57595 -22.81617 -22.02829 -21.34378 -20.99989 -20.96253 -18.89807 -18.37772 -17.78763 -17.48421 -17.16180 -16.80140 -16.57548 -16.37485 -16.02656 -15.82045 -15.61805 -15.27498 -14.97061 -14.79734 -14.51714 -14.29080 -14.08123 -13.98046 -13.65206 -13.52814 -13.43395 -13.20812 -13.06329 -12.92741 -12.86308 -12.65617 -12.62160 -12.36199 -12.06679 -11.89700 -11.83309 -11.70577 -11.54685 -11.48341 -11.39392 -10.89292 -10.67922 -10.55661 -10.00866 -9.68562 -9.54060 -8.85987 -7.88969 -5.26522 0.37206 0.45705 1.42989 1.46874 1.52323 1.73521 2.20662 2.49876 2.73693 2.87760 3.30640 3.53599 3.65776 3.75586 3.82338 3.90474 3.95309 4.00531 4.06953 4.14806 4.24085 4.27202 4.30410 4.34088 4.44254 4.48283 4.55444 4.60700 4.64332 4.68826 4.74568 4.82841 4.89487 4.96529 4.98683 5.01488 5.09518 5.15690 5.17967 5.22829 5.41881 5.46636 5.52661 5.60628 5.61859 5.64762 5.66289 5.77602 6.09084 6.20291 6.22771 6.67449 7.08493 7.38478 7.76047 8.42173 9.21985 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.002185 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.646434 B =12814.111415 C =13152.679692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.611 5.611 10 C 0.173 3.827 11 C -0.134 4.134 12 C -0.112 4.112 13 C 0.148 3.852 14 H 0.055 0.945 15 C 0.131 3.869 16 N -0.710 5.710 17 C 0.505 3.495 18 O -0.584 6.584 19 C -0.120 4.120 20 C 0.147 3.853 21 H 0.056 0.944 22 O -0.386 6.386 23 C 0.051 3.949 24 C -0.110 4.110 25 C -0.088 4.088 26 C -0.125 4.125 27 C -0.120 4.120 28 C -0.126 4.126 29 C -0.118 4.118 30 C -0.130 4.130 31 H 0.248 0.752 32 H 0.036 0.964 33 H -0.011 1.011 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.030 0.970 40 H 0.416 0.584 41 H 0.120 0.880 42 H 0.143 0.857 43 H 0.049 0.951 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.141 0.859 48 H 0.146 0.854 49 H 0.146 0.854 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.666 -26.635 9.285 30.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.336 5.336 10 C 0.048 3.952 11 C -0.172 4.172 12 C -0.150 4.150 13 C 0.041 3.959 14 H 0.073 0.927 15 C 0.005 3.995 16 N -0.363 5.363 17 C 0.292 3.708 18 O -0.463 6.463 19 C -0.159 4.159 20 C 0.089 3.911 21 H 0.074 0.926 22 O -0.305 6.305 23 C -0.025 4.025 24 C -0.147 4.147 25 C -0.088 4.088 26 C -0.143 4.143 27 C -0.138 4.138 28 C -0.144 4.144 29 C -0.136 4.136 30 C -0.130 4.130 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.007 0.993 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.254 0.746 41 H 0.138 0.862 42 H 0.160 0.840 43 H 0.068 0.932 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.107 0.893 47 H 0.158 0.842 48 H 0.163 0.837 49 H 0.164 0.836 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.338 -25.771 9.807 30.208 hybrid contribution 0.270 1.478 0.145 1.509 sum 12.608 -24.293 9.951 29.123 Atomic orbital electron populations 1.70138 1.06318 1.25463 1.57493 1.25715 0.96538 1.01087 1.02176 0.85249 0.77334 0.79164 0.78204 1.19735 1.21940 1.20938 1.19274 0.90755 0.83629 1.43319 0.90514 1.44753 1.06864 1.02236 1.79743 1.21263 0.84147 0.93559 0.96202 1.22875 0.99647 0.95229 0.99442 1.22589 0.95184 0.97494 0.99691 1.21350 0.96117 0.86645 0.91788 0.92737 1.21605 0.95456 0.84243 0.98233 1.45840 1.60968 1.17767 1.11707 1.21215 0.77934 0.89817 0.81804 1.90712 1.57931 1.51381 1.46319 1.21844 1.04201 0.94238 0.95605 1.20492 0.86654 0.93619 0.90373 0.92645 1.88131 1.31564 1.92304 1.18537 1.22762 1.02035 0.95302 0.82414 1.21135 0.98124 0.96686 0.98728 1.19697 0.97934 0.95660 0.95522 1.21326 0.96486 0.95862 1.00648 1.21493 0.97714 1.00446 0.94144 1.21439 0.99901 0.94618 0.98435 1.21392 0.95417 0.97649 0.99108 1.20191 0.99198 0.97070 0.96562 0.94319 0.94570 0.99313 0.90904 0.90034 0.87437 0.92048 0.95301 0.95120 0.74649 0.86162 0.83969 0.93245 0.87581 0.87734 0.89336 0.84159 0.83662 0.83584 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.13 10.58 21.65 0.23 -57.90 16 2 C -0.06 -3.58 5.47 84.86 0.46 -3.11 16 3 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.24 -13.63 9.76 84.03 0.82 -12.81 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.61 -31.20 3.13 -668.23 -2.09 -33.29 16 10 C 0.17 8.59 5.41 86.86 0.47 9.06 16 11 C -0.13 -4.67 7.09 31.99 0.23 -4.44 16 12 C -0.11 -3.43 6.10 31.78 0.19 -3.23 16 13 C 0.15 5.73 3.22 45.34 0.15 5.87 16 14 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 15 C 0.13 5.24 5.07 86.38 0.44 5.68 16 16 N -0.71 -20.38 5.33 -463.05 -2.47 -22.85 16 17 C 0.50 15.64 7.70 87.66 0.68 16.31 16 18 O -0.58 -24.78 15.40 11.18 0.17 -24.60 16 19 C -0.12 -2.43 5.10 29.85 0.15 -2.28 16 20 C 0.15 3.53 2.28 29.83 0.07 3.59 16 21 H 0.06 1.54 7.95 -2.39 -0.02 1.52 16 22 O -0.39 -10.95 9.64 -134.78 -1.30 -12.25 16 23 C 0.05 1.08 6.85 71.97 0.49 1.57 16 24 C -0.11 -1.73 6.00 29.85 0.18 -1.55 16 25 C -0.09 -1.56 5.77 -19.90 -0.11 -1.68 16 26 C -0.13 -1.72 9.67 22.31 0.22 -1.51 16 27 C -0.12 -1.43 10.05 22.23 0.22 -1.20 16 28 C -0.13 -1.54 10.05 22.23 0.22 -1.32 16 29 C -0.12 -1.76 9.09 22.38 0.20 -1.56 16 30 C -0.13 -2.51 5.46 -19.86 -0.11 -2.62 16 31 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.04 2.01 6.94 -2.38 -0.02 1.99 16 33 H -0.01 -0.62 8.06 -2.39 -0.02 -0.64 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 1.94 7.81 -2.38 -0.02 1.92 16 38 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 39 H 0.03 1.42 7.92 -2.39 -0.02 1.40 16 40 H 0.42 8.23 8.34 -92.71 -0.77 7.45 16 41 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.14 1.82 6.31 -2.39 -0.02 1.81 16 43 H 0.05 1.05 8.07 -2.39 -0.02 1.03 16 44 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 48 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 49 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 50 H 0.14 1.54 6.46 -2.91 -0.02 1.52 16 Total: -1.00 -80.51 396.45 1.71 -78.81 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.16 Total: 18.18 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 4.97 Total: 4.78 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -4.33 Total: -114.04 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.13 Total: -36.85 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -80.51 1.71 -78.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493151284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.395 kcal (2) G-P(sol) polarization free energy of solvation -80.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds