Wall clock time and date at job start Wed Apr 1 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99872 * 2 1 4 4 H 1.48497 * 109.47398 * 240.00634 * 3 2 1 5 5 H 1.48501 * 109.47210 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47137 * 120.00256 * 3 2 1 7 7 C 1.38811 * 120.00479 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00340 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00102 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46956 * 184.88866 * 10 9 7 12 12 N 1.46503 * 110.81428 * 302.01653 * 11 10 9 13 13 C 1.34772 * 120.00367 * 296.65499 * 12 11 10 14 14 O 1.21287 * 119.99899 * 4.73375 * 13 12 11 15 15 C 1.50695 * 120.00634 * 184.72954 * 13 12 11 16 16 H 1.09000 * 109.33653 * 42.42746 * 15 13 12 17 17 O 1.42718 * 109.34605 * 162.10674 * 15 13 12 18 18 C 1.43217 * 113.12048 * 172.01584 * 17 15 13 19 19 C 1.52983 * 108.47003 * 289.28033 * 18 17 15 20 20 C 1.50741 * 109.76914 * 49.16116 * 19 18 17 21 21 C 1.38594 * 118.76792 * 163.22534 * 20 19 18 22 22 C 1.38071 * 120.27623 * 179.80842 * 21 20 19 23 23 C 1.38263 * 119.86582 * 0.02562 * 22 21 20 24 24 C 1.38043 * 119.89252 * 0.07192 * 23 22 21 25 25 C 1.37678 * 121.28969 * 343.01686 * 20 19 18 26 26 C 1.54884 * 110.75806 * 65.35256 * 11 10 9 27 27 C 1.54270 * 104.19321 * 156.25347 * 26 11 10 28 28 C 1.53875 * 106.60130 * 336.39369 * 27 26 11 29 29 C 1.54265 * 106.59875 * 359.97438 * 28 27 26 30 30 H 0.97001 * 120.00497 * 359.97438 * 1 2 3 31 31 H 0.97009 * 120.00091 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47338 * 64.88979 * 10 9 7 33 33 H 1.08995 * 109.46994 * 304.88199 * 10 9 7 34 34 H 0.96997 * 119.99736 * 116.65396 * 12 11 10 35 35 H 1.09001 * 109.63705 * 48.96780 * 18 17 15 36 36 H 1.08993 * 109.64258 * 169.37957 * 18 17 15 37 37 H 1.08994 * 109.41956 * 169.25651 * 19 18 17 38 38 H 1.08995 * 109.41746 * 289.12757 * 19 18 17 39 39 H 1.08004 * 119.86131 * 359.82466 * 21 20 19 40 40 H 1.07995 * 120.06603 * 180.02562 * 22 21 20 41 41 H 1.07995 * 120.05001 * 180.10275 * 23 22 21 42 42 H 1.07999 * 119.85204 * 180.02562 * 24 23 22 43 43 H 1.09000 * 110.48602 * 37.58531 * 26 11 10 44 44 H 1.08993 * 110.48865 * 274.93648 * 26 11 10 45 45 H 1.08999 * 110.03629 * 217.10553 * 27 26 11 46 46 H 1.09005 * 110.02942 * 95.67932 * 27 26 11 47 47 H 1.09004 * 110.03037 * 119.27984 * 28 27 26 48 48 H 1.08992 * 110.02943 * 240.71078 * 28 27 26 49 49 H 1.08994 * 110.48803 * 142.28537 * 29 28 27 50 50 H 1.08993 * 110.48732 * 264.80042 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1037 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0685 -4.8171 -0.1235 12 7 0.0950 -4.7891 0.9710 13 6 0.5077 -4.9465 2.2442 14 8 1.6923 -5.0252 2.4924 15 6 -0.5025 -5.0245 3.3597 16 1 -1.3369 -5.6527 3.0477 17 8 0.1119 -5.5944 4.5150 18 6 -0.7207 -5.5407 5.6790 19 6 -0.8171 -4.0849 6.1392 20 6 -1.1626 -3.2017 4.9675 21 6 -1.6389 -1.9235 5.2133 22 6 -1.9612 -1.0869 4.1633 23 6 -1.8087 -1.5261 2.8612 24 6 -1.3363 -2.7997 2.6156 25 6 -1.0094 -3.6405 3.6716 26 6 0.3521 -4.7844 -1.4963 27 6 -0.0959 -6.2430 -1.7240 28 6 0.8342 -7.1263 -0.8740 29 6 1.8154 -6.1738 -0.1600 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6176 -3.7533 0.9300 33 1 2.7488 -3.6775 -0.8435 34 1 -0.8467 -4.6573 0.7792 35 1 -1.7152 -5.9145 5.4356 36 1 -0.2839 -6.1499 6.4703 37 1 -1.5917 -3.9962 6.9009 38 1 0.1398 -3.7729 6.5574 39 1 -1.7581 -1.5805 6.2304 40 1 -2.3316 -0.0915 4.3587 41 1 -2.0583 -0.8736 2.0376 42 1 -1.2171 -3.1419 1.5982 43 1 1.0423 -4.4708 -2.2794 44 1 -0.5120 -4.1211 -1.4600 45 1 0.0020 -6.5035 -2.7778 46 1 -1.1294 -6.3707 -1.4018 47 1 0.2521 -7.6827 -0.1394 48 1 1.3835 -7.8154 -1.5154 49 1 2.0189 -6.5241 0.8519 50 1 2.7426 -6.0866 -0.7262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495194259.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:24 Heat of formation + Delta-G solvation = -41.312226 kcal Electronic energy + Delta-G solvation = -32430.140723 eV Core-core repulsion = 28422.239900 eV Total energy + Delta-G solvation = -4007.900823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.73768 -39.46010 -37.63315 -36.96413 -34.27544 -33.41821 -32.71102 -31.60627 -30.80813 -29.30281 -28.57413 -28.14349 -26.00430 -24.45521 -23.75706 -22.36469 -22.17574 -20.99842 -20.03764 -19.83674 -19.06922 -17.26923 -17.11922 -16.88083 -16.26970 -15.73560 -15.47799 -15.17601 -14.78498 -14.67194 -14.36214 -14.17892 -13.88669 -13.62366 -13.52438 -13.22614 -13.10519 -12.82598 -12.70853 -12.37280 -12.29693 -11.92652 -11.74772 -11.55727 -11.36524 -11.30312 -11.03781 -10.92064 -10.87295 -10.76636 -10.65854 -10.52101 -10.36947 -10.23081 -10.04054 -9.63989 -9.63218 -9.37183 -8.75564 -8.52756 -8.40333 -8.28043 -6.78148 -5.69639 -2.93818 1.55818 1.72573 2.97045 3.12886 3.48568 3.51817 3.54577 4.06597 4.13390 4.61596 4.68978 4.73217 4.76355 4.86034 4.88945 4.95983 5.06497 5.12751 5.19203 5.29265 5.47582 5.52185 5.58371 5.59847 5.62104 5.67217 5.73982 5.81372 5.85976 5.88683 5.97580 6.00374 6.02795 6.05756 6.24479 6.26717 6.34624 6.37445 6.37987 6.47478 6.60247 6.62728 6.73402 6.79651 6.93050 6.96926 7.07685 7.18908 7.32215 7.78683 7.87646 8.50184 8.63565 9.62344 10.19867 10.56864 11.53249 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007479 B = 0.006131 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.741763 B = 4566.021386 C = 7266.105868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.227 4.227 8 H 0.066 0.934 9 N -0.723 5.723 10 C 0.145 3.855 11 C 0.171 3.829 12 N -0.706 5.706 13 C 0.534 3.466 14 O -0.506 6.506 15 C 0.120 3.880 16 H 0.085 0.915 17 O -0.348 6.348 18 C 0.060 3.940 19 C -0.113 4.113 20 C -0.076 4.076 21 C -0.125 4.125 22 C -0.115 4.115 23 C -0.088 4.088 24 C -0.090 4.090 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.120 4.120 29 C -0.128 4.128 30 H 0.251 0.749 31 H 0.381 0.619 32 H 0.040 0.960 33 H 0.026 0.974 34 H 0.395 0.605 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.126 0.874 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.078 0.922 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 -13.187 6.091 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.207 4.207 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.359 4.359 8 H 0.084 0.916 9 N -0.367 5.367 10 C 0.017 3.983 11 C 0.085 3.915 12 N -0.360 5.360 13 C 0.318 3.682 14 O -0.380 6.380 15 C 0.058 3.942 16 H 0.102 0.898 17 O -0.266 6.266 18 C -0.017 4.017 19 C -0.150 4.150 20 C -0.076 4.076 21 C -0.143 4.143 22 C -0.133 4.133 23 C -0.106 4.106 24 C -0.108 4.108 25 C -0.121 4.121 26 C -0.155 4.155 27 C -0.163 4.163 28 C -0.158 4.158 29 C -0.167 4.167 30 H 0.061 0.939 31 H 0.214 0.786 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.230 0.770 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.097 0.903 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.945 -13.236 6.267 16.208 hybrid contribution -0.488 1.453 -0.049 1.533 sum -7.433 -11.783 6.218 15.256 Atomic orbital electron populations 1.69604 1.04773 1.25152 1.58667 1.24571 0.95506 0.97099 1.03525 0.86351 0.78599 0.84025 0.77724 1.21534 1.21869 1.21602 1.19163 0.90934 0.84249 1.41531 0.91640 1.42142 1.05491 0.99623 1.89416 1.21036 0.93068 0.84948 0.99252 1.21510 0.89308 0.95432 0.85260 1.45867 1.10624 1.74248 1.05264 1.19675 0.89180 0.76566 0.82776 1.90680 1.16927 1.47415 1.82943 1.20693 0.94242 0.92007 0.87249 0.89757 1.88161 1.41672 1.79584 1.17144 1.22667 0.95133 0.95817 0.88070 1.21095 1.02781 0.94922 0.96226 1.19204 0.99966 0.95231 0.93204 1.20923 1.01038 0.93431 0.98908 1.21158 0.99923 0.99222 0.93032 1.21252 0.96832 0.95491 0.97025 1.21197 0.97117 0.94224 0.98241 1.19698 1.02665 0.95835 0.93922 1.22565 1.01032 0.95905 0.95967 1.22187 0.99056 0.95310 0.99724 1.22104 0.97451 0.97839 0.98422 1.22674 0.98119 0.94190 1.01703 0.93916 0.78573 0.94248 0.95626 0.76960 0.92687 0.88071 0.89958 0.89756 0.86471 0.86290 0.84583 0.85589 0.89771 0.90759 0.91968 0.92210 0.92367 0.92190 0.90300 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.39 13.06 55.49 0.72 -25.66 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.90 22.73 29.55 -169.99 -5.02 17.70 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.23 -6.39 9.99 -15.06 -0.15 -6.55 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -17.90 5.31 -59.91 -0.32 -18.21 16 10 C 0.15 3.11 5.05 -4.04 -0.02 3.09 16 11 C 0.17 2.81 0.34 -129.81 -0.04 2.77 16 12 N -0.71 -11.13 3.77 -45.75 -0.17 -11.30 16 13 C 0.53 9.62 5.94 -10.99 -0.07 9.55 16 14 O -0.51 -11.12 13.38 -13.79 -0.18 -11.30 16 15 C 0.12 1.86 3.13 -29.06 -0.09 1.77 16 16 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 17 O -0.35 -5.56 10.02 -54.57 -0.55 -6.11 16 18 C 0.06 0.68 6.85 37.15 0.25 0.94 16 19 C -0.11 -1.35 6.00 -27.87 -0.17 -1.51 16 20 C -0.08 -1.15 5.77 -104.68 -0.60 -1.75 16 21 C -0.12 -1.82 9.67 -39.51 -0.38 -2.20 16 22 C -0.12 -1.82 10.05 -39.63 -0.40 -2.22 16 23 C -0.09 -1.57 10.05 -39.64 -0.40 -1.97 16 24 C -0.09 -1.57 9.10 -39.41 -0.36 -1.93 16 25 C -0.12 -1.99 5.45 -104.61 -0.57 -2.56 16 26 C -0.12 -1.68 5.53 -25.07 -0.14 -1.82 16 27 C -0.13 -1.43 6.78 -25.61 -0.17 -1.60 16 28 C -0.12 -1.42 6.78 -25.61 -0.17 -1.60 16 29 C -0.13 -1.89 5.66 -25.06 -0.14 -2.04 16 30 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.38 9.45 7.18 -40.82 -0.29 9.15 16 32 H 0.04 0.97 6.43 -51.93 -0.33 0.64 16 33 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.39 5.37 6.86 -40.82 -0.28 5.09 16 35 H 0.05 0.53 8.07 -51.93 -0.42 0.11 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.14 2.58 8.06 -52.49 -0.42 2.15 16 42 H 0.13 2.19 4.96 -52.49 -0.26 1.93 16 43 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 44 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.08 1.31 6.34 -51.93 -0.33 0.98 16 50 H 0.07 1.07 8.05 -51.93 -0.42 0.66 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -33.07 391.59 -11.13 -44.20 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -7.79 Total: 14.84 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -3.72 Total: -10.05 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.23 Total: -55.18 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.73 Total: -17.41 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.07 -11.13 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495194259.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.887 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds