Wall clock time and date at job start Wed Apr 1 2020 02:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00226 * 2 1 4 4 H 1.48504 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47262 * 300.00055 * 3 2 1 6 6 H 1.48503 * 109.47319 * 60.00196 * 3 2 1 7 7 C 1.38809 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99955 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00018 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99882 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47142 * 184.95956 * 10 9 7 12 12 N 1.46494 * 110.43427 * 307.74854 * 11 10 9 13 13 C 1.34773 * 120.00336 * 297.81293 * 12 11 10 14 14 O 1.21284 * 119.99928 * 4.02539 * 13 12 11 15 15 C 1.50704 * 120.00567 * 184.02647 * 13 12 11 16 16 H 1.08999 * 109.33431 * 309.50711 * 15 13 12 17 17 O 1.42722 * 109.34037 * 189.82426 * 15 13 12 18 18 C 1.43207 * 113.13569 * 187.99023 * 17 15 13 19 19 C 1.52976 * 108.47535 * 70.67913 * 18 17 15 20 20 C 1.50744 * 109.75726 * 310.76398 * 19 18 17 21 21 C 1.38595 * 118.76343 * 196.79313 * 20 19 18 22 22 C 1.38067 * 120.27637 * 180.45132 * 21 20 19 23 23 C 1.38266 * 119.85962 * 0.02562 * 22 21 20 24 24 C 1.38047 * 119.89671 * 359.90988 * 23 22 21 25 25 C 1.37902 * 121.34998 * 17.08360 * 20 19 18 26 26 C 1.54886 * 110.59900 * 70.36901 * 11 10 9 27 27 C 1.54884 * 102.74931 * 156.67798 * 26 11 10 28 28 C 1.54268 * 104.19905 * 322.05166 * 27 26 11 29 29 C 1.53879 * 106.59358 * 23.61398 * 28 27 26 30 30 H 0.97005 * 119.99959 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00224 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47085 * 64.96095 * 10 9 7 33 33 H 1.08999 * 109.47599 * 304.96147 * 10 9 7 34 34 H 0.96998 * 120.00014 * 117.81520 * 12 11 10 35 35 H 1.09005 * 109.63461 * 190.36718 * 18 17 15 36 36 H 1.08991 * 109.64191 * 310.97891 * 18 17 15 37 37 H 1.09003 * 109.42428 * 70.85471 * 19 18 17 38 38 H 1.08995 * 109.42057 * 190.67763 * 19 18 17 39 39 H 1.08002 * 119.86382 * 0.45380 * 21 20 19 40 40 H 1.08001 * 120.07108 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.04820 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.84483 * 180.02562 * 24 23 22 43 43 H 1.08998 * 110.75280 * 274.98990 * 26 11 10 44 44 H 1.09003 * 110.75818 * 38.36208 * 26 11 10 45 45 H 1.09009 * 110.48515 * 203.37935 * 27 26 11 46 46 H 1.08997 * 110.49112 * 80.73248 * 27 26 11 47 47 H 1.08992 * 110.03642 * 264.33059 * 28 27 26 48 48 H 1.08998 * 110.03391 * 142.89083 * 28 27 26 49 49 H 1.08999 * 110.03355 * 240.71750 * 29 28 27 50 50 H 1.08996 * 110.03734 * 119.28125 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 6 1.0682 -4.8170 -0.1242 12 7 0.0183 -4.7051 0.8913 13 6 0.3379 -4.7557 2.1996 14 8 1.5009 -4.8204 2.5376 15 6 -0.7496 -4.7319 3.2426 16 1 -1.4241 -3.8996 3.0418 17 8 -0.1634 -4.5647 4.5331 18 6 -1.1047 -4.7123 5.6021 19 6 -1.5035 -6.1861 5.6968 20 6 -1.8827 -6.7001 4.3314 21 6 -2.6009 -7.8819 4.2394 22 6 -2.9566 -8.3860 3.0042 23 6 -2.5942 -7.7093 1.8542 24 6 -1.8800 -6.5314 1.9451 25 6 -1.5245 -6.0228 3.1848 26 6 0.4483 -4.8543 -1.5431 27 6 0.0042 -6.3315 -1.6833 28 6 1.1249 -7.1313 -0.9874 29 6 1.8014 -6.1683 0.0040 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 0.0005 32 1 2.6162 -3.7540 0.9317 33 1 2.7495 -3.6771 -0.8416 34 1 -0.9070 -4.5946 0.6221 35 1 -0.6470 -4.3959 6.5395 36 1 -1.9875 -4.1063 5.3993 37 1 -0.6638 -6.7649 6.0817 38 1 -2.3532 -6.2890 6.3717 39 1 -2.8836 -8.4107 5.1377 40 1 -3.5166 -9.3069 2.9364 41 1 -2.8705 -8.1010 0.8864 42 1 -1.5977 -6.0033 1.0463 43 1 -0.4098 -4.1853 -1.6074 44 1 1.1938 -4.6019 -2.2971 45 1 -0.0669 -6.6103 -2.7347 46 1 -0.9488 -6.4929 -1.1795 47 1 1.8492 -7.4779 -1.7244 48 1 0.7005 -7.9806 -0.4522 49 1 2.8540 -6.0476 -0.2520 50 1 1.7053 -6.5503 1.0203 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495194267.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:26 Heat of formation + Delta-G solvation = -59.106030 kcal Electronic energy + Delta-G solvation = -32052.960808 eV Core-core repulsion = 28044.288387 eV Total energy + Delta-G solvation = -4008.672420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.08352 -40.73094 -38.96498 -38.22378 -36.20896 -34.86372 -33.93984 -33.22313 -32.41777 -30.51011 -29.85753 -29.58578 -27.33161 -26.26804 -24.86251 -24.00883 -23.56376 -22.23841 -21.37369 -21.06544 -20.46987 -19.17884 -18.52610 -18.15492 -17.61327 -17.05920 -16.74792 -16.44963 -16.30319 -16.14464 -15.70736 -15.57354 -15.22726 -15.06878 -14.83791 -14.74826 -14.53815 -14.40202 -14.05212 -13.73685 -13.55979 -13.42789 -13.20151 -12.93411 -12.84411 -12.72314 -12.50114 -12.38069 -12.17246 -12.13396 -11.99301 -11.93120 -11.78802 -11.68627 -11.63602 -11.27226 -11.06694 -10.76215 -10.69023 -9.97431 -9.72037 -9.56305 -8.95220 -7.96181 -5.22181 0.28092 0.42239 1.43379 1.44966 1.54678 1.57919 1.88837 2.54354 2.78253 2.95057 3.35255 3.43484 3.49504 3.62665 3.70501 3.77114 3.85540 3.93253 4.03322 4.13963 4.18659 4.24217 4.27989 4.39707 4.53411 4.54215 4.56578 4.61071 4.66791 4.72076 4.78497 4.80907 4.85934 4.90838 4.91527 5.02753 5.08994 5.12320 5.13929 5.18266 5.30625 5.33677 5.45796 5.47364 5.51742 5.57215 5.57783 5.68370 5.96164 6.04824 6.26887 6.53799 7.25676 7.34182 8.08228 8.37308 9.27230 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.004071 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.341672 B = 6875.542734 C = 8473.250767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.063 0.937 9 N -0.729 5.729 10 C 0.147 3.853 11 C 0.172 3.828 12 N -0.693 5.693 13 C 0.529 3.471 14 O -0.554 6.554 15 C 0.117 3.883 16 H 0.091 0.909 17 O -0.381 6.381 18 C 0.046 3.954 19 C -0.111 4.111 20 C -0.082 4.082 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.132 4.132 26 C -0.114 4.114 27 C -0.112 4.112 28 C -0.112 4.112 29 C -0.119 4.119 30 H 0.251 0.749 31 H 0.377 0.623 32 H 0.005 0.995 33 H 0.027 0.973 34 H 0.406 0.594 35 H 0.119 0.881 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.131 0.869 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 -21.688 4.563 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.222 1.222 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.371 5.371 10 C 0.019 3.981 11 C 0.086 3.914 12 N -0.348 5.348 13 C 0.315 3.685 14 O -0.431 6.431 15 C 0.055 3.945 16 H 0.108 0.892 17 O -0.300 6.300 18 C -0.030 4.030 19 C -0.148 4.148 20 C -0.083 4.083 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.132 4.132 26 C -0.152 4.152 27 C -0.150 4.150 28 C -0.149 4.149 29 C -0.158 4.158 30 H 0.060 0.940 31 H 0.210 0.790 32 H 0.023 0.977 33 H 0.045 0.955 34 H 0.245 0.755 35 H 0.137 0.863 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.148 0.852 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.539 -21.610 4.830 24.111 hybrid contribution -0.082 1.684 0.114 1.690 sum -9.622 -19.927 4.944 22.674 Atomic orbital electron populations 1.69784 1.06176 1.25847 1.59600 1.25417 0.96466 1.00507 1.03720 0.85141 0.78022 0.80172 0.76847 1.19834 1.21317 1.22161 1.19593 0.91154 0.85742 1.41133 0.91884 1.42247 1.05462 1.00324 1.89112 1.21124 0.94138 0.85594 0.97267 1.21363 0.87615 0.93981 0.88434 1.45932 1.10886 1.73702 1.04271 1.20194 0.89335 0.75359 0.83621 1.90653 1.21513 1.49375 1.81553 1.20649 0.92277 0.96700 0.84833 0.89154 1.88168 1.36069 1.92274 1.13459 1.23026 0.93260 0.96331 0.90362 1.21174 1.03397 0.96115 0.94065 1.19760 0.98040 0.95971 0.94487 1.21365 0.98200 0.94815 0.99486 1.21558 0.98974 1.00450 0.91985 1.21395 0.97695 0.94442 1.00258 1.21459 0.98620 0.97639 0.96439 1.19789 1.01336 0.96660 0.95445 1.22688 1.00904 0.98459 0.93168 1.22380 0.98437 0.92340 1.01810 1.22083 0.97996 0.97381 0.97488 1.22366 0.99573 0.93796 1.00080 0.93985 0.79022 0.97660 0.95520 0.75540 0.86282 0.91681 0.89666 0.86416 0.83269 0.82892 0.83261 0.85194 0.91277 0.90229 0.89328 0.90477 0.90463 0.91025 0.91713 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.34 13.06 21.65 0.28 -59.05 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 48.21 29.55 68.60 2.03 50.24 16 4 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 7 C -0.24 -14.55 9.99 84.03 0.84 -13.71 16 8 H 0.06 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.73 -39.00 5.36 -343.45 -1.84 -40.84 16 10 C 0.15 6.69 4.81 86.38 0.42 7.11 16 11 C 0.17 5.86 0.42 4.68 0.00 5.86 16 12 N -0.69 -23.09 3.21 -418.07 -1.34 -24.44 16 13 C 0.53 20.65 6.01 87.66 0.53 21.18 16 14 O -0.55 -26.58 13.51 15.90 0.21 -26.37 16 15 C 0.12 3.90 3.15 29.09 0.09 4.00 16 16 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 17 O -0.38 -13.60 9.98 -130.04 -1.30 -14.89 16 18 C 0.05 1.09 6.85 71.97 0.49 1.58 16 19 C -0.11 -2.08 6.00 29.85 0.18 -1.91 16 20 C -0.08 -1.83 5.78 -19.85 -0.11 -1.95 16 21 C -0.12 -2.02 9.67 22.31 0.22 -1.80 16 22 C -0.11 -1.67 10.05 22.24 0.22 -1.45 16 23 C -0.12 -2.04 10.05 22.23 0.22 -1.82 16 24 C -0.12 -2.77 9.04 22.32 0.20 -2.57 16 25 C -0.13 -3.50 5.46 -19.86 -0.11 -3.60 16 26 C -0.11 -3.18 5.76 31.88 0.18 -2.99 16 27 C -0.11 -2.17 6.79 31.67 0.22 -1.96 16 28 C -0.11 -2.35 6.80 31.32 0.21 -2.14 16 29 C -0.12 -3.60 5.67 31.32 0.18 -3.42 16 30 H 0.25 14.93 8.31 -92.70 -0.77 14.15 16 31 H 0.38 20.49 7.19 -92.71 -0.67 19.82 16 32 H 0.01 0.29 6.53 -2.38 -0.02 0.27 16 33 H 0.03 1.21 8.02 -2.39 -0.02 1.19 16 34 H 0.41 11.53 6.53 -92.71 -0.61 10.93 16 35 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.06 1.40 8.07 -2.39 -0.02 1.38 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.13 2.82 4.51 -2.91 -0.01 2.80 16 43 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 44 H 0.08 2.31 7.97 -2.39 -0.02 2.29 16 45 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.08 1.28 8.03 -2.39 -0.02 1.26 16 47 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.06 2.01 7.84 -2.39 -0.02 2.00 16 50 H 0.05 1.80 6.46 -2.39 -0.02 1.78 16 Total: -1.00 -79.74 390.29 2.18 -77.56 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: -0.31 Total: 41.00 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 4.44 Total: -3.21 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -2.90 Total: -124.33 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -1.08 Total: -41.26 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -79.74 2.18 -77.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495194267.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.453 kcal (2) G-P(sol) polarization free energy of solvation -79.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds