Wall clock time and date at job start Wed Apr 1 2020 02:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00234 * 2 1 4 4 H 1.48496 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47071 * 300.00356 * 3 2 1 6 6 H 1.48497 * 109.46927 * 59.99859 * 3 2 1 7 7 C 1.38806 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99775 * 197.13169 * 7 2 1 9 9 N 1.36937 * 120.00221 * 17.13093 * 7 2 1 10 10 C 1.47156 * 120.98168 * 204.71332 * 9 7 2 11 11 C 1.53294 * 108.38545 * 230.51282 * 10 9 7 12 12 O 1.42950 * 109.26646 * 307.72419 * 11 10 9 13 13 C 1.42961 * 114.16886 * 62.50081 * 12 11 10 14 14 H 1.08996 * 109.51782 * 57.45002 * 13 12 11 15 15 C 1.53003 * 109.51472 * 177.55136 * 13 12 11 16 16 N 1.46502 * 109.46817 * 299.89964 * 15 13 12 17 17 C 1.34779 * 119.99581 * 179.97438 * 16 15 13 18 18 O 1.21281 * 120.00591 * 355.01239 * 17 16 15 19 19 C 1.50701 * 119.99812 * 175.01586 * 17 16 15 20 20 C 1.50703 * 112.84862 * 294.94067 * 19 17 16 21 21 C 1.38242 * 119.99729 * 113.96243 * 20 19 17 22 22 C 1.38235 * 119.99228 * 179.74450 * 21 20 19 23 23 C 1.38229 * 120.00563 * 0.52640 * 22 21 20 24 24 C 1.38236 * 119.99881 * 359.75013 * 23 22 21 25 25 C 1.38229 * 120.00216 * 294.23331 * 20 19 17 26 26 C 1.53780 * 113.61439 * 163.74441 * 19 17 16 27 27 C 1.54051 * 86.98418 * 270.83566 * 26 19 17 28 28 C 1.53779 * 87.08060 * 334.57123 * 27 26 19 29 29 C 1.47148 * 120.98088 * 24.69732 * 9 7 2 30 30 H 0.97005 * 119.99113 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.68512 * 350.24403 * 10 9 7 32 32 H 1.09009 * 109.67571 * 110.79084 * 10 9 7 33 33 H 1.09002 * 109.51021 * 67.62884 * 11 10 9 34 34 H 1.09004 * 109.51231 * 187.77586 * 11 10 9 35 35 H 1.08999 * 109.47332 * 179.89617 * 15 13 12 36 36 H 1.09007 * 109.47001 * 59.89635 * 15 13 12 37 37 H 0.96992 * 120.00208 * 359.97438 * 16 15 13 38 38 H 1.07999 * 120.00283 * 359.97438 * 21 20 19 39 39 H 1.08007 * 119.99521 * 180.30027 * 22 21 20 40 40 H 1.08000 * 120.00197 * 179.76917 * 23 22 21 41 41 H 1.07999 * 120.00158 * 179.97438 * 24 23 22 42 42 H 1.08006 * 119.99981 * 0.02562 * 25 20 19 43 43 H 1.08993 * 113.61521 * 25.43740 * 26 19 17 44 44 H 1.09006 * 113.61132 * 156.33852 * 26 19 17 45 45 H 1.09004 * 113.61757 * 220.01785 * 27 26 19 46 46 H 1.09006 * 113.68480 * 89.12991 * 27 26 19 47 47 H 1.09001 * 113.60947 * 270.88452 * 28 27 26 48 48 H 1.08995 * 113.61838 * 139.97781 * 28 27 26 49 49 H 1.08996 * 109.68501 * 9.76130 * 29 9 7 50 50 H 1.08998 * 109.68105 * 249.20713 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0544 -1.2230 0.2750 9 7 1.3711 -2.3616 -0.3504 10 6 1.8534 -3.6667 0.1287 11 6 1.9839 -4.6058 -1.0759 12 8 0.7540 -4.6121 -1.8045 13 6 0.3934 -3.3430 -2.3552 14 1 1.1913 -2.9895 -3.0082 15 6 -0.9005 -3.4839 -3.1595 16 7 -0.6976 -4.4452 -4.2462 17 6 -1.7086 -4.7310 -5.0905 18 8 -2.8106 -4.2628 -4.8976 19 6 -1.4696 -5.6325 -6.2743 20 6 -0.5134 -5.0403 -7.2772 21 6 0.7180 -5.6313 -7.4907 22 6 1.5929 -5.0910 -8.4146 23 6 1.2411 -3.9537 -9.1170 24 6 0.0121 -3.3594 -8.8993 25 6 -0.8652 -3.9029 -7.9797 26 6 -2.7622 -6.1786 -6.9035 27 6 -2.6488 -7.3559 -5.9165 28 6 -1.1358 -7.0827 -5.8867 29 6 0.1814 -2.3392 -1.2161 30 1 -0.4849 0.8402 0.0004 31 1 2.8253 -3.5459 0.6070 32 1 1.1416 -4.0817 0.8424 33 1 2.7883 -4.2573 -1.7237 34 1 2.2064 -5.6147 -0.7285 35 1 -1.1758 -2.5156 -3.5775 36 1 -1.6980 -3.8375 -2.5058 37 1 0.1642 -4.8759 -4.3581 38 1 0.9948 -6.5172 -6.9385 39 1 2.5530 -5.5556 -8.5849 40 1 1.9263 -3.5295 -9.8360 41 1 -0.2626 -2.4706 -9.4478 42 1 -1.8253 -3.4384 -7.8094 43 1 -3.6326 -5.5454 -6.7321 44 1 -2.6496 -6.4717 -7.9474 45 1 -2.9100 -8.3195 -6.3542 46 1 -3.1438 -7.1764 -4.9621 47 1 -0.5795 -7.6224 -6.6531 48 1 -0.6941 -7.1790 -4.8949 49 1 0.0462 -1.3393 -1.6284 50 1 -0.6987 -2.6205 -0.6379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495856705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:43 Heat of formation + Delta-G solvation = -10.558348 kcal Electronic energy + Delta-G solvation = -30834.796413 eV Core-core repulsion = 26828.229179 eV Total energy + Delta-G solvation = -4006.567235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.10729 -38.98516 -38.46630 -37.22540 -34.80299 -34.31584 -31.60478 -31.31586 -31.10742 -30.79479 -27.58978 -26.53882 -26.02238 -25.01133 -23.31358 -22.62005 -22.14500 -21.71522 -21.16241 -19.85015 -18.88789 -17.59418 -17.03828 -16.64126 -16.04750 -15.79897 -15.59911 -15.15080 -14.98755 -14.89154 -14.62178 -14.34047 -13.98865 -13.92153 -13.58664 -13.48027 -13.27887 -12.98255 -12.86224 -12.80760 -12.58867 -12.25227 -12.03741 -11.77484 -11.53775 -11.28768 -11.13397 -11.09523 -10.88294 -10.72858 -10.61797 -10.44739 -10.42995 -10.26486 -10.04187 -9.81995 -9.67228 -9.11938 -9.08322 -8.82849 -8.80048 -8.57310 -6.80114 -5.86612 -3.29388 1.14514 1.23772 2.70578 3.24866 3.32955 3.40500 3.42440 3.61009 4.22935 4.24564 4.41826 4.42482 4.46446 4.62144 4.72886 4.83757 4.90327 4.97859 5.16928 5.21328 5.33544 5.37666 5.41362 5.47824 5.52980 5.55110 5.62451 5.71289 5.78784 5.84024 5.86320 5.90681 5.91119 5.93615 6.00790 6.10110 6.17292 6.23548 6.30860 6.35180 6.36029 6.42078 6.48332 6.67289 6.75271 6.81702 7.05837 7.46861 7.67516 7.68665 7.82339 8.29694 8.35377 9.08272 9.71513 10.27485 11.21276 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.002974 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.918675 B = 9413.511425 C =10147.282435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.595 5.595 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.056 3.944 14 H 0.055 0.945 15 C 0.133 3.867 16 N -0.712 5.712 17 C 0.540 3.460 18 O -0.539 6.539 19 C -0.069 4.069 20 C -0.064 4.064 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.107 4.107 26 C -0.112 4.112 27 C -0.141 4.141 28 C -0.127 4.127 29 C 0.151 3.849 30 H 0.255 0.745 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.402 0.598 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.099 0.901 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 -14.211 -17.487 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.088 0.912 9 N -0.319 5.319 10 C -0.017 4.017 11 C -0.028 4.028 12 O -0.309 6.309 13 C -0.004 4.004 14 H 0.073 0.927 15 C 0.009 3.991 16 N -0.362 5.362 17 C 0.325 3.675 18 O -0.416 6.416 19 C -0.072 4.072 20 C -0.064 4.064 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.149 4.149 27 C -0.178 4.178 28 C -0.164 4.164 29 C 0.025 3.975 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.236 0.764 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.112 0.888 48 H 0.095 0.905 49 H 0.117 0.883 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.363 -13.839 -17.318 22.171 hybrid contribution 1.118 1.043 0.096 1.532 sum 0.755 -12.797 -17.222 21.469 Atomic orbital electron populations 1.70029 1.05228 1.25630 1.53758 1.25024 0.95364 0.98465 1.00850 0.86192 0.79272 0.83736 0.77405 1.20243 1.21434 1.21594 1.19248 0.92806 0.84530 1.41839 0.91224 1.44075 1.32173 1.01111 1.54521 1.21597 0.98530 0.87565 0.94035 1.22999 0.85893 0.99610 0.94275 1.87768 1.40909 1.31056 1.71209 1.23139 0.94737 0.86264 0.96217 0.92702 1.21432 0.97690 0.92581 0.87393 1.45864 1.14840 1.44977 1.30527 1.19665 0.84364 0.80892 0.82599 1.90690 1.23597 1.53170 1.74118 1.20934 0.97841 0.94807 0.93642 1.19375 0.94386 0.95860 0.96812 1.21077 0.93205 1.00352 0.98524 1.21130 0.99446 0.96459 0.96633 1.21173 0.96696 0.96177 0.99939 1.21149 0.94199 0.99849 0.98299 1.21053 0.99982 0.95398 0.96070 1.22895 0.96178 0.97182 0.98662 1.22880 0.95890 0.98656 1.00384 1.23054 0.97749 0.93041 1.02578 1.21345 0.89114 0.98050 0.89008 0.93450 0.91983 0.95554 0.93896 0.90022 0.90110 0.90659 0.76367 0.85639 0.85991 0.86160 0.86008 0.85981 0.89622 0.89427 0.90924 0.89740 0.88782 0.90494 0.88270 0.95135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 11.04 55.49 0.61 -25.23 16 2 C 0.00 0.04 4.96 -17.43 -0.09 -0.04 16 3 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.26 -6.90 9.67 -15.06 -0.15 -7.04 16 8 H 0.07 1.84 7.88 -52.48 -0.41 1.42 16 9 N -0.60 -14.81 3.06 -171.83 -0.53 -15.34 16 10 C 0.11 2.25 6.74 -3.53 -0.02 2.23 16 11 C 0.05 0.87 6.98 37.31 0.26 1.13 16 12 O -0.39 -7.21 10.14 -35.23 -0.36 -7.57 16 13 C 0.06 1.07 2.86 -26.58 -0.08 0.99 16 14 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 15 C 0.13 2.31 5.38 -4.04 -0.02 2.29 16 16 N -0.71 -10.59 5.45 -60.29 -0.33 -10.92 16 17 C 0.54 8.06 6.30 -10.98 -0.07 7.99 16 18 O -0.54 -9.89 15.94 5.56 0.09 -9.80 16 19 C -0.07 -0.78 0.92 -156.00 -0.14 -0.92 16 20 C -0.06 -0.70 4.87 -104.62 -0.51 -1.21 16 21 C -0.11 -1.08 9.05 -39.58 -0.36 -1.44 16 22 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 23 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 25 C -0.11 -1.21 9.46 -39.59 -0.37 -1.59 16 26 C -0.11 -1.16 6.99 -25.78 -0.18 -1.34 16 27 C -0.14 -1.34 7.81 -25.78 -0.20 -1.55 16 28 C -0.13 -1.16 6.31 -25.92 -0.16 -1.33 16 29 C 0.15 3.58 4.75 -3.53 -0.02 3.57 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.06 1.21 7.95 -51.93 -0.41 0.80 16 32 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 37 H 0.40 5.39 8.36 -40.82 -0.34 5.05 16 38 H 0.13 0.98 6.42 -52.49 -0.34 0.64 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.09 1.03 7.34 -51.93 -0.38 0.65 16 44 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.09 0.69 6.81 -51.93 -0.35 0.34 16 48 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 49 H 0.10 2.59 6.03 -51.93 -0.31 2.28 16 50 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -31.52 400.51 -10.83 -42.35 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.02 Total: 6.95 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -3.30 Total: -2.82 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.24 Total: -51.49 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.27 Total: -17.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.52 -10.83 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495856705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.793 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds