Wall clock time and date at job start Wed Apr 1 2020 02:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00234 * 2 1 4 4 H 1.48496 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47071 * 300.00356 * 3 2 1 6 6 H 1.48497 * 109.46927 * 59.99859 * 3 2 1 7 7 C 1.38806 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99775 * 197.13169 * 7 2 1 9 9 N 1.36937 * 120.00221 * 17.13093 * 7 2 1 10 10 C 1.47156 * 120.98168 * 204.71332 * 9 7 2 11 11 C 1.53294 * 108.38545 * 230.51282 * 10 9 7 12 12 O 1.42950 * 109.26646 * 307.72419 * 11 10 9 13 13 C 1.42961 * 114.16886 * 62.50081 * 12 11 10 14 14 H 1.08996 * 109.51782 * 57.45002 * 13 12 11 15 15 C 1.53003 * 109.51472 * 177.55136 * 13 12 11 16 16 N 1.46502 * 109.46817 * 299.89964 * 15 13 12 17 17 C 1.34779 * 119.99581 * 179.97438 * 16 15 13 18 18 O 1.21281 * 120.00591 * 355.01239 * 17 16 15 19 19 C 1.50701 * 119.99812 * 175.01586 * 17 16 15 20 20 C 1.50703 * 112.84862 * 294.94067 * 19 17 16 21 21 C 1.38242 * 119.99729 * 113.96243 * 20 19 17 22 22 C 1.38235 * 119.99228 * 179.74450 * 21 20 19 23 23 C 1.38229 * 120.00563 * 0.52640 * 22 21 20 24 24 C 1.38236 * 119.99881 * 359.75013 * 23 22 21 25 25 C 1.38229 * 120.00216 * 294.23331 * 20 19 17 26 26 C 1.53780 * 113.61439 * 163.74441 * 19 17 16 27 27 C 1.54051 * 86.98418 * 270.83566 * 26 19 17 28 28 C 1.53779 * 87.08060 * 334.57123 * 27 26 19 29 29 C 1.47148 * 120.98088 * 24.69732 * 9 7 2 30 30 H 0.97005 * 119.99113 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.68512 * 350.24403 * 10 9 7 32 32 H 1.09009 * 109.67571 * 110.79084 * 10 9 7 33 33 H 1.09002 * 109.51021 * 67.62884 * 11 10 9 34 34 H 1.09004 * 109.51231 * 187.77586 * 11 10 9 35 35 H 1.08999 * 109.47332 * 179.89617 * 15 13 12 36 36 H 1.09007 * 109.47001 * 59.89635 * 15 13 12 37 37 H 0.96992 * 120.00208 * 359.97438 * 16 15 13 38 38 H 1.07999 * 120.00283 * 359.97438 * 21 20 19 39 39 H 1.08007 * 119.99521 * 180.30027 * 22 21 20 40 40 H 1.08000 * 120.00197 * 179.76917 * 23 22 21 41 41 H 1.07999 * 120.00158 * 179.97438 * 24 23 22 42 42 H 1.08006 * 119.99981 * 0.02562 * 25 20 19 43 43 H 1.08993 * 113.61521 * 25.43740 * 26 19 17 44 44 H 1.09006 * 113.61132 * 156.33852 * 26 19 17 45 45 H 1.09004 * 113.61757 * 220.01785 * 27 26 19 46 46 H 1.09006 * 113.68480 * 89.12991 * 27 26 19 47 47 H 1.09001 * 113.60947 * 270.88452 * 28 27 26 48 48 H 1.08995 * 113.61838 * 139.97781 * 28 27 26 49 49 H 1.08996 * 109.68501 * 9.76130 * 29 9 7 50 50 H 1.08998 * 109.68105 * 249.20713 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0544 -1.2230 0.2750 9 7 1.3711 -2.3616 -0.3504 10 6 1.8534 -3.6667 0.1287 11 6 1.9839 -4.6058 -1.0759 12 8 0.7540 -4.6121 -1.8045 13 6 0.3934 -3.3430 -2.3552 14 1 1.1913 -2.9895 -3.0082 15 6 -0.9005 -3.4839 -3.1595 16 7 -0.6976 -4.4452 -4.2462 17 6 -1.7086 -4.7310 -5.0905 18 8 -2.8106 -4.2628 -4.8976 19 6 -1.4696 -5.6325 -6.2743 20 6 -0.5134 -5.0403 -7.2772 21 6 0.7180 -5.6313 -7.4907 22 6 1.5929 -5.0910 -8.4146 23 6 1.2411 -3.9537 -9.1170 24 6 0.0121 -3.3594 -8.8993 25 6 -0.8652 -3.9029 -7.9797 26 6 -2.7622 -6.1786 -6.9035 27 6 -2.6488 -7.3559 -5.9165 28 6 -1.1358 -7.0827 -5.8867 29 6 0.1814 -2.3392 -1.2161 30 1 -0.4849 0.8402 0.0004 31 1 2.8253 -3.5459 0.6070 32 1 1.1416 -4.0817 0.8424 33 1 2.7883 -4.2573 -1.7237 34 1 2.2064 -5.6147 -0.7285 35 1 -1.1758 -2.5156 -3.5775 36 1 -1.6980 -3.8375 -2.5058 37 1 0.1642 -4.8759 -4.3581 38 1 0.9948 -6.5172 -6.9385 39 1 2.5530 -5.5556 -8.5849 40 1 1.9263 -3.5295 -9.8360 41 1 -0.2626 -2.4706 -9.4478 42 1 -1.8253 -3.4384 -7.8094 43 1 -3.6326 -5.5454 -6.7321 44 1 -2.6496 -6.4717 -7.9474 45 1 -2.9100 -8.3195 -6.3542 46 1 -3.1438 -7.1764 -4.9621 47 1 -0.5795 -7.6224 -6.6531 48 1 -0.6941 -7.1790 -4.8949 49 1 0.0462 -1.3393 -1.6284 50 1 -0.6987 -2.6205 -0.6379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495856705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:41 Heat of formation + Delta-G solvation = -29.197075 kcal Electronic energy + Delta-G solvation = -30835.604649 eV Core-core repulsion = 26828.229179 eV Total energy + Delta-G solvation = -4007.375471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.07744 -40.31911 -39.63682 -38.20583 -36.48812 -35.87194 -33.28227 -32.66698 -32.03357 -31.81414 -29.20493 -27.93937 -26.83979 -26.30980 -25.07150 -23.64562 -23.22831 -22.70820 -22.25514 -21.50589 -20.04697 -18.94471 -18.40920 -17.61414 -17.50971 -17.18929 -16.93256 -16.45655 -16.14923 -15.97409 -15.74304 -15.64652 -15.52706 -15.07471 -15.01605 -14.74977 -14.58568 -14.29115 -14.23344 -13.75015 -13.72188 -13.33980 -13.19439 -13.03937 -12.88195 -12.71731 -12.51842 -12.49092 -12.20204 -12.08453 -12.00926 -11.93111 -11.88991 -11.40490 -11.33897 -11.24418 -10.99016 -10.81160 -10.57240 -10.17092 -9.81257 -9.60359 -8.79595 -7.92984 -5.39537 0.39279 0.50662 1.44300 1.46414 1.53062 1.56909 2.04839 2.46343 2.75483 2.85345 3.21768 3.42365 3.46898 3.60451 3.64504 3.75729 3.85505 4.01296 4.03185 4.14730 4.17194 4.24029 4.31235 4.41103 4.44230 4.49215 4.56098 4.65043 4.65923 4.70331 4.76935 4.78735 4.82702 4.94697 5.01179 5.04904 5.05931 5.07091 5.14389 5.16719 5.21505 5.33269 5.41395 5.50360 5.58016 5.59205 5.64159 5.66489 6.11051 6.23307 6.30024 6.48819 7.03023 7.15767 7.72498 8.25222 9.12880 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.002974 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.918675 B = 9413.511425 C =10147.282435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.264 4.264 8 H 0.076 0.924 9 N -0.615 5.615 10 C 0.101 3.899 11 C 0.057 3.943 12 O -0.388 6.388 13 C 0.079 3.921 14 H 0.061 0.939 15 C 0.144 3.856 16 N -0.703 5.703 17 C 0.537 3.463 18 O -0.581 6.581 19 C -0.068 4.068 20 C -0.074 4.074 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.112 4.112 27 C -0.140 4.140 28 C -0.114 4.114 29 C 0.159 3.841 30 H 0.251 0.749 31 H 0.074 0.926 32 H 0.016 0.984 33 H 0.054 0.946 34 H 0.123 0.877 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.413 0.587 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.061 0.939 47 H 0.123 0.877 48 H 0.076 0.924 49 H 0.069 0.931 50 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 -16.420 -19.177 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.394 4.394 8 H 0.094 0.906 9 N -0.339 5.339 10 C -0.024 4.024 11 C -0.021 4.021 12 O -0.308 6.308 13 C 0.020 3.980 14 H 0.079 0.921 15 C 0.019 3.981 16 N -0.354 5.354 17 C 0.324 3.676 18 O -0.460 6.460 19 C -0.071 4.071 20 C -0.075 4.075 21 C -0.131 4.131 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.146 4.146 25 C -0.148 4.148 26 C -0.149 4.149 27 C -0.177 4.177 28 C -0.151 4.151 29 C 0.032 3.968 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.249 0.751 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.149 0.851 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.126 0.874 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.141 0.859 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 2.610 -16.096 -19.015 25.049 hybrid contribution 0.210 1.716 0.662 1.851 sum 2.820 -14.380 -18.353 23.485 Atomic orbital electron populations 1.70197 1.06769 1.25956 1.55348 1.25813 0.96069 1.01650 1.01189 0.85170 0.78735 0.79565 0.76769 1.18670 1.21683 1.21996 1.19621 0.93240 0.85576 1.40971 0.90613 1.44377 1.32123 1.02251 1.55180 1.21836 0.98529 0.86354 0.95657 1.23097 0.85439 1.00906 0.92626 1.87785 1.41841 1.29975 1.71159 1.22702 0.95400 0.85467 0.94456 0.92072 1.21090 0.96368 0.92826 0.87836 1.45706 1.15509 1.44415 1.29733 1.20387 0.83451 0.80601 0.83113 1.90669 1.25318 1.54844 1.75217 1.20861 0.98851 0.95266 0.92130 1.19370 0.95094 0.96100 0.96920 1.21335 0.92312 1.00876 0.98600 1.21500 1.00313 0.96116 0.95818 1.21501 0.96445 0.96231 1.00149 1.21350 0.94624 1.00405 0.98218 1.21090 0.99911 0.96317 0.97446 1.22935 0.94832 0.97176 0.99994 1.22854 0.96307 0.99393 0.99145 1.23102 0.97560 0.90994 1.03433 1.21106 0.88007 0.97785 0.89911 0.93995 0.90808 0.96636 0.92788 0.85881 0.91155 0.92344 0.75084 0.83419 0.83380 0.84041 0.85062 0.87746 0.92190 0.87449 0.88450 0.91984 0.85857 0.90532 0.91269 0.98329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.63 11.04 21.65 0.24 -55.39 16 2 C -0.05 -2.89 4.96 84.86 0.42 -2.47 16 3 Si 0.97 44.43 29.59 68.60 2.03 46.46 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 7 C -0.26 -14.35 9.67 84.03 0.81 -13.54 16 8 H 0.08 3.94 7.88 -2.91 -0.02 3.91 16 9 N -0.61 -30.86 3.06 -697.54 -2.13 -33.00 16 10 C 0.10 4.08 6.74 86.35 0.58 4.66 16 11 C 0.06 1.79 6.98 72.08 0.50 2.30 16 12 O -0.39 -13.69 10.14 -148.98 -1.51 -15.20 16 13 C 0.08 3.03 2.86 30.70 0.09 3.12 16 14 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 15 C 0.14 5.17 5.38 86.38 0.46 5.63 16 16 N -0.70 -20.80 5.45 -463.04 -2.52 -23.32 16 17 C 0.54 16.33 6.30 87.66 0.55 16.88 16 18 O -0.58 -22.50 15.94 -3.03 -0.05 -22.55 16 19 C -0.07 -1.47 0.92 -53.15 -0.05 -1.52 16 20 C -0.07 -1.52 4.87 -19.86 -0.10 -1.61 16 21 C -0.11 -1.79 9.05 22.27 0.20 -1.59 16 22 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 23 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 24 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 25 C -0.13 -2.92 9.46 22.27 0.21 -2.71 16 26 C -0.11 -2.27 6.99 31.21 0.22 -2.05 16 27 C -0.14 -2.46 7.81 31.21 0.24 -2.22 16 28 C -0.11 -1.78 6.31 31.12 0.20 -1.58 16 29 C 0.16 7.78 4.75 86.36 0.41 8.20 16 30 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 31 H 0.07 2.75 7.95 -2.39 -0.02 2.74 16 32 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.41 10.38 8.36 -92.71 -0.77 9.61 16 38 H 0.15 1.62 6.42 -2.91 -0.02 1.60 16 39 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.10 2.62 8.06 -2.91 -0.02 2.60 16 43 H 0.06 1.53 7.34 -2.39 -0.02 1.51 16 44 H 0.11 1.74 8.09 -2.38 -0.02 1.72 16 45 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.12 1.25 6.81 -2.39 -0.02 1.24 16 48 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 49 H 0.07 3.80 6.03 -2.39 -0.01 3.79 16 50 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -71.15 400.51 1.64 -69.51 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.16 Total: 27.51 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.43 Total: 5.99 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -4.41 Total: -111.71 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.56 Total: -37.76 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.15 1.64 -69.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495856705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.313 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds