Wall clock time and date at job start Wed Apr 1 2020 03:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48502 * 109.46856 * 355.30692 * 3 2 1 5 5 H 1.48492 * 109.47222 * 115.31138 * 3 2 1 6 6 H 1.48506 * 109.46692 * 235.31134 * 3 2 1 7 7 C 1.38813 * 119.99700 * 180.27031 * 2 1 3 8 8 H 1.07998 * 120.00084 * 352.38585 * 7 2 1 9 9 N 1.36935 * 120.00005 * 172.39403 * 7 2 1 10 10 C 1.47066 * 136.05943 * 6.53411 * 9 7 2 11 11 C 1.53745 * 87.88938 * 152.96737 * 10 9 7 12 12 O 1.42908 * 114.08428 * 139.77917 * 11 10 9 13 13 C 1.53000 * 114.39993 * 272.67796 * 11 10 9 14 14 N 1.46503 * 109.46955 * 278.58784 * 13 11 10 15 15 C 1.34779 * 119.99786 * 179.97438 * 14 13 11 16 16 O 1.21274 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99587 * 179.97438 * 15 14 13 18 18 C 1.50700 * 109.47062 * 180.02562 * 17 15 14 19 19 C 1.38233 * 120.00017 * 269.73133 * 18 17 15 20 20 C 1.38231 * 120.00252 * 179.78480 * 19 18 17 21 21 C 1.38237 * 120.00157 * 0.44163 * 20 19 18 22 22 C 1.50697 * 120.00531 * 179.83467 * 21 20 19 23 23 C 1.53783 * 113.61076 * 37.46753 * 22 21 20 24 24 C 1.53784 * 87.08141 * 220.02110 * 23 22 21 25 25 C 1.53781 * 87.07818 * 25.43728 * 24 23 22 26 26 C 1.38232 * 119.99649 * 359.80620 * 21 20 19 27 27 C 1.38239 * 120.00163 * 89.99492 * 18 17 15 28 28 C 1.47066 * 136.05754 * 186.91383 * 9 7 2 29 29 H 0.97000 * 120.00276 * 185.10857 * 1 2 3 30 30 H 1.09001 * 113.46890 * 267.70643 * 10 9 7 31 31 H 1.09003 * 113.46343 * 38.13625 * 10 9 7 32 32 H 0.96700 * 113.99852 * 86.56799 * 12 11 10 33 33 H 1.08998 * 109.46930 * 38.58544 * 13 11 10 34 34 H 1.08993 * 109.47267 * 158.58419 * 13 11 10 35 35 H 0.97000 * 120.00052 * 359.97438 * 14 13 11 36 36 H 1.08998 * 109.47307 * 300.00221 * 17 15 14 37 37 H 1.08993 * 109.47428 * 60.00427 * 17 15 14 38 38 H 1.08003 * 119.99775 * 359.97438 * 19 18 17 39 39 H 1.08004 * 120.00452 * 180.26675 * 20 19 18 40 40 H 1.08991 * 112.85113 * 168.77374 * 22 21 20 41 41 H 1.08993 * 113.62133 * 334.57459 * 23 22 21 42 42 H 1.09005 * 113.60864 * 105.47481 * 23 22 21 43 43 H 1.09002 * 113.61675 * 270.88454 * 24 23 22 44 44 H 1.08999 * 113.61174 * 139.98245 * 24 23 22 45 45 H 1.09009 * 113.60880 * 220.02098 * 25 24 23 46 46 H 1.08994 * 113.68955 * 89.12819 * 25 24 23 47 47 H 1.08001 * 120.00279 * 180.02562 * 26 21 20 48 48 H 1.08000 * 120.00300 * 359.97438 * 27 18 17 49 49 H 1.09001 * 113.46935 * 321.86111 * 28 9 7 50 50 H 1.09004 * 113.46453 * 92.23850 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2893 2.7441 -0.1146 5 1 3.0162 1.7471 1.2656 6 1 3.1879 1.6478 -1.1513 7 6 2.0102 -1.2022 -0.0057 8 1 1.4773 -2.1339 0.1139 9 7 3.3705 -1.2067 -0.1627 10 6 4.4320 -0.1911 -0.2312 11 6 5.4052 -1.2541 0.3043 12 8 6.6927 -1.2311 -0.3155 13 6 5.4666 -1.3432 1.8304 14 7 6.3505 -0.2945 2.3456 15 6 6.5574 -0.1793 3.6724 16 8 6.0123 -0.9440 4.4398 17 6 7.4671 0.8990 4.2022 18 6 7.5275 0.8114 5.7054 19 6 6.6266 1.5223 6.4760 20 6 6.6791 1.4385 7.8547 21 6 7.6386 0.6510 8.4633 22 6 7.6983 0.5625 9.9665 23 6 6.3151 0.5562 10.6386 24 6 6.9221 1.4690 11.7172 25 6 7.9391 1.9168 10.6541 26 6 8.5428 -0.0558 7.6929 27 6 8.4875 0.0245 6.3139 28 6 4.4122 -2.2290 -0.3436 29 1 -0.4850 -0.8367 0.0748 30 1 4.6585 0.1322 -1.2473 31 1 4.2790 0.6435 0.4530 32 1 7.3158 -0.6161 0.0950 33 1 4.4664 -1.2102 2.2427 34 1 5.8529 -2.3197 2.1221 35 1 6.7868 0.3168 1.7318 36 1 8.4673 0.7654 3.7903 37 1 7.0814 1.8757 3.9101 38 1 5.8795 2.1407 6.0007 39 1 5.9724 1.9905 8.4567 40 1 8.3596 -0.2294 10.3179 41 1 5.5388 1.0385 10.0447 42 1 6.0162 -0.4229 11.0129 43 1 7.3703 0.9246 12.5483 44 1 6.2523 2.2647 12.0432 45 1 8.9512 2.0362 11.0410 46 1 7.6080 2.7712 10.0638 47 1 9.2922 -0.6714 8.1682 48 1 9.1939 -0.5279 5.7121 49 1 4.2424 -3.1307 0.2449 50 1 4.6327 -2.4437 -1.3893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500889524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:07 Heat of formation + Delta-G solvation = -5.048831 kcal Electronic energy + Delta-G solvation = -29467.814151 eV Core-core repulsion = 25461.485827 eV Total energy + Delta-G solvation = -4006.328324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.52747 -40.98902 -40.21201 -38.61765 -36.86870 -35.32610 -34.45309 -33.77526 -31.80518 -30.56803 -29.41015 -27.53054 -27.20075 -26.48997 -25.35700 -23.74471 -23.65651 -22.30312 -21.48473 -20.90398 -20.02129 -19.57038 -18.95286 -17.86956 -17.75275 -17.31701 -16.84636 -16.60365 -16.35226 -16.08049 -15.77902 -15.69847 -15.42125 -15.12684 -14.88509 -14.81302 -14.51306 -14.26232 -13.99921 -13.79714 -13.68255 -13.46938 -13.35254 -13.33520 -12.90922 -12.72829 -12.68880 -12.52414 -12.39487 -12.10823 -11.92777 -11.81640 -11.43087 -11.39895 -11.30736 -11.08166 -11.06631 -10.99492 -10.62208 -10.21018 -9.77607 -9.37027 -9.27967 -8.71054 -5.53986 0.38770 0.54576 1.32492 1.44862 1.62312 1.63822 2.04929 2.50546 2.74044 2.85695 3.05104 3.21868 3.29632 3.64964 3.66876 3.71019 3.79476 3.85831 3.98138 4.02514 4.10212 4.15978 4.22935 4.25496 4.41633 4.43757 4.56919 4.58834 4.62637 4.64161 4.69597 4.73628 4.77907 4.80568 4.85688 4.90965 5.05708 5.07570 5.08759 5.11667 5.14515 5.18431 5.27242 5.29962 5.49119 5.56462 5.69124 5.80141 5.89195 6.14237 6.46323 6.63519 6.73274 7.22833 7.25229 8.17392 8.84563 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014329 B = 0.002294 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.545922 B =12204.616300 C =13282.987149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.086 4.086 3 Si 1.109 2.891 4 H -0.305 1.305 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.290 4.290 8 H 0.052 0.948 9 N -0.651 5.651 10 C 0.073 3.927 11 C 0.107 3.893 12 O -0.539 6.539 13 C 0.135 3.865 14 N -0.718 5.718 15 C 0.512 3.488 16 O -0.580 6.580 17 C -0.093 4.093 18 C -0.084 4.084 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.080 4.080 22 C -0.076 4.076 23 C -0.143 4.143 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.113 4.113 28 C 0.132 3.868 29 H 0.246 0.754 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.391 0.609 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.416 0.584 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.056 0.944 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.208 6.110 17.426 32.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.278 4.278 3 Si 0.935 3.065 4 H -0.233 1.233 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.417 4.417 8 H 0.069 0.931 9 N -0.381 5.381 10 C -0.052 4.052 11 C 0.064 3.936 12 O -0.345 6.345 13 C 0.010 3.990 14 N -0.373 5.373 15 C 0.300 3.700 16 O -0.459 6.459 17 C -0.132 4.132 18 C -0.085 4.085 19 C -0.140 4.140 20 C -0.145 4.145 21 C -0.080 4.080 22 C -0.094 4.094 23 C -0.180 4.180 24 C -0.174 4.174 25 C -0.164 4.164 26 C -0.146 4.146 27 C -0.131 4.131 28 C 0.006 3.994 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.242 0.758 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.254 0.746 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.154 0.846 48 H 0.153 0.847 49 H 0.074 0.926 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 25.131 6.718 17.533 31.371 hybrid contribution -0.636 -1.605 -0.159 1.734 sum 24.495 5.113 17.374 30.464 Atomic orbital electron populations 1.71025 1.06658 1.28714 1.54906 1.27171 0.96513 1.04787 0.99292 0.83275 0.73488 0.71666 0.78108 1.23288 1.19916 1.17850 1.19922 0.80479 0.94570 1.46732 0.93052 1.45646 1.01480 1.05088 1.85924 1.23669 0.87543 0.94213 0.99780 1.22869 0.82736 0.97565 0.90477 1.86579 1.22114 1.67067 1.58764 1.21185 0.94621 0.92137 0.91071 1.45776 1.48842 1.34902 1.07750 1.21271 0.81717 0.85531 0.81463 1.90738 1.51391 1.46010 1.57716 1.20750 1.01816 0.98473 0.92177 1.19490 0.96421 0.98010 0.94565 1.21210 0.98368 1.00029 0.94373 1.21099 0.99031 0.99950 0.94453 1.19969 0.95417 0.96691 0.95904 1.21619 0.98796 0.99649 0.89372 1.23078 0.96127 1.00670 0.98125 1.22830 0.98427 0.99430 0.96681 1.22952 1.00265 0.95864 0.97338 1.21270 0.99633 0.99929 0.93776 1.21232 0.98734 0.97906 0.95196 1.22489 0.84735 0.92999 0.99134 0.94439 0.91766 0.92855 0.75849 0.93022 0.90465 0.74589 0.84081 0.85566 0.86032 0.85482 0.87821 0.90472 0.91481 0.89119 0.90940 0.90466 0.90335 0.84562 0.84669 0.92552 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.41 13.70 21.65 0.30 -63.11 16 2 C -0.09 -5.20 5.50 84.86 0.47 -4.73 16 3 Si 1.11 52.90 25.13 68.60 1.72 54.63 16 4 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 5 H -0.27 -11.87 6.63 99.48 0.66 -11.21 16 6 H -0.25 -10.64 6.13 99.48 0.61 -10.03 16 7 C -0.29 -17.05 11.08 84.03 0.93 -16.12 16 8 H 0.05 3.28 8.05 -2.91 -0.02 3.25 16 9 N -0.65 -31.25 3.47 -738.47 -2.56 -33.81 16 10 C 0.07 2.78 5.12 83.26 0.43 3.21 16 11 C 0.11 3.28 1.74 -10.38 -0.02 3.27 16 12 O -0.54 -12.69 13.56 -148.98 -2.02 -14.71 16 13 C 0.13 4.14 5.33 86.38 0.46 4.60 16 14 N -0.72 -15.95 5.32 -463.07 -2.46 -18.42 16 15 C 0.51 12.87 7.82 87.66 0.69 13.56 16 16 O -0.58 -21.09 16.03 -3.01 -0.05 -21.14 16 17 C -0.09 -1.46 5.83 29.10 0.17 -1.29 16 18 C -0.08 -1.76 4.37 -19.87 -0.09 -1.85 16 19 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 20 C -0.13 -2.69 8.61 22.27 0.19 -2.49 16 21 C -0.08 -1.55 5.29 -19.87 -0.11 -1.66 16 22 C -0.08 -1.14 3.98 -11.01 -0.04 -1.19 16 23 C -0.14 -2.13 7.45 31.12 0.23 -1.90 16 24 C -0.14 -1.55 8.08 31.12 0.25 -1.30 16 25 C -0.13 -1.57 7.55 31.12 0.23 -1.33 16 26 C -0.13 -2.44 9.71 22.27 0.22 -2.22 16 27 C -0.11 -2.21 9.70 22.27 0.22 -1.99 16 28 C 0.13 5.09 8.10 83.17 0.67 5.76 16 29 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 30 H 0.06 2.38 7.71 -2.39 -0.02 2.36 16 31 H 0.05 2.04 4.65 -2.39 -0.01 2.03 16 32 H 0.39 5.12 7.50 -74.06 -0.56 4.57 16 33 H 0.05 2.08 7.94 -2.39 -0.02 2.06 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.42 5.60 7.24 -92.71 -0.67 4.93 16 36 H 0.14 1.13 8.08 -2.39 -0.02 1.11 16 37 H 0.13 1.44 8.08 -2.39 -0.02 1.42 16 38 H 0.12 2.55 8.06 -2.91 -0.02 2.52 16 39 H 0.13 2.35 6.66 -2.91 -0.02 2.33 16 40 H 0.10 1.35 8.09 -2.39 -0.02 1.34 16 41 H 0.08 1.27 6.31 -2.39 -0.02 1.26 16 42 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.08 1.05 7.72 -2.39 -0.02 1.03 16 47 H 0.14 1.98 8.05 -2.91 -0.02 1.96 16 48 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 49 H 0.06 2.12 8.12 -2.39 -0.02 2.10 16 50 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -82.16 399.97 -0.41 -82.56 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.45 Total: 24.18 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 5.12 Total: -10.18 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -4.73 Total: -115.34 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -2.07 Total: -35.85 kcal Atomic # 14 Polarization: 52.90 SS G_CDS: 1.72 Total: 54.63 kcal Total: -82.16 -0.41 -82.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500889524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.514 kcal (2) G-P(sol) polarization free energy of solvation -82.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds