Wall clock time and date at job start Wed Apr 1 2020 03:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00451 * 2 1 4 4 H 1.48493 * 109.47016 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46909 * 120.00160 * 3 2 1 6 6 H 1.48498 * 109.46942 * 239.99847 * 3 2 1 7 7 C 1.38817 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99929 * 168.88486 * 7 2 1 9 9 N 1.36939 * 119.99876 * 348.88206 * 7 2 1 10 10 C 1.47152 * 120.97940 * 322.67457 * 9 7 2 11 11 C 1.53723 * 108.16025 * 129.43486 * 10 9 7 12 12 O 1.42965 * 109.14384 * 52.53551 * 11 10 9 13 13 C 1.42965 * 114.16722 * 297.28599 * 12 11 10 14 14 C 1.47145 * 120.98035 * 142.95917 * 9 7 2 15 15 H 1.09003 * 109.68606 * 110.79108 * 14 9 7 16 16 C 1.53000 * 109.68484 * 350.23319 * 14 9 7 17 17 N 1.46501 * 109.46896 * 63.53344 * 16 14 9 18 18 C 1.34774 * 120.00021 * 185.17496 * 17 16 14 19 19 O 1.21282 * 119.99933 * 4.84321 * 18 17 16 20 20 C 1.50698 * 120.00211 * 184.83856 * 18 17 16 21 21 C 1.53006 * 115.54858 * 152.37168 * 20 18 17 22 22 C 1.50701 * 109.47210 * 296.36768 * 21 20 18 23 23 C 1.38237 * 119.99777 * 274.93093 * 22 21 20 24 24 C 1.38233 * 119.99798 * 179.81404 * 23 22 21 25 25 C 1.38237 * 119.99937 * 0.41164 * 24 23 22 26 26 C 1.38238 * 120.00151 * 359.81582 * 25 24 23 27 27 C 1.38230 * 119.99984 * 95.20164 * 22 21 20 28 28 C 1.53001 * 117.49471 * 6.67070 * 20 18 17 29 29 C 1.53001 * 117.50069 * 298.04689 * 20 18 17 30 30 H 0.97008 * 119.99505 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.68328 * 249.20845 * 10 9 7 32 32 H 1.08996 * 109.68515 * 9.76973 * 10 9 7 33 33 H 1.08999 * 109.65506 * 292.57353 * 11 10 9 34 34 H 1.08997 * 109.44450 * 172.37108 * 11 10 9 35 35 H 1.08996 * 109.51248 * 302.66382 * 13 12 11 36 36 H 1.08995 * 109.55429 * 182.53125 * 13 12 11 37 37 H 1.09006 * 109.47413 * 183.53452 * 16 14 9 38 38 H 1.08999 * 109.46684 * 303.53354 * 16 14 9 39 39 H 0.96994 * 119.99928 * 5.17666 * 17 16 14 40 40 H 1.08998 * 109.47018 * 56.36842 * 21 20 18 41 41 H 1.09000 * 109.46668 * 176.36600 * 21 20 18 42 42 H 1.08004 * 119.99908 * 359.97438 * 23 22 21 43 43 H 1.07998 * 120.00347 * 180.20235 * 24 23 22 44 44 H 1.08002 * 120.00239 * 179.79291 * 25 24 23 45 45 H 1.07993 * 120.00486 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.00104 * 359.97438 * 27 22 21 47 47 H 1.08991 * 117.50151 * 359.97438 * 28 20 18 48 48 H 1.09006 * 117.49889 * 145.02165 * 28 20 18 49 49 H 1.09002 * 117.49563 * 214.97331 * 29 20 18 50 50 H 1.08994 * 117.49575 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6962 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0749 -1.2110 -0.1808 9 7 1.3446 -2.3771 0.2276 10 6 0.2436 -2.4471 1.2014 11 6 -0.9606 -3.1127 0.5160 12 8 -0.5449 -4.3525 -0.0620 13 6 0.4412 -4.2183 -1.0884 14 6 1.7135 -3.6081 -0.4892 15 1 2.1679 -4.3151 0.2050 16 6 2.7022 -3.2760 -1.6086 17 7 3.9388 -2.7480 -1.0270 18 6 4.9185 -2.2880 -1.8303 19 8 4.7425 -2.2294 -3.0288 20 6 6.2325 -1.8464 -1.2392 21 6 7.4467 -1.9729 -2.1615 22 6 7.6784 -3.4252 -2.4907 23 6 8.4157 -4.2193 -1.6324 24 6 8.6249 -5.5523 -1.9324 25 6 8.1041 -6.0892 -3.0950 26 6 7.3708 -5.2939 -3.9556 27 6 7.1583 -3.9617 -3.6536 28 6 6.4517 -2.0891 0.2555 29 6 6.2075 -0.6698 -0.2614 30 1 -0.4850 0.8402 -0.0004 31 1 0.5526 -3.0392 2.0629 32 1 -0.0258 -1.4415 1.5240 33 1 -1.3458 -2.4577 -0.2655 34 1 -1.7411 -3.2985 1.2538 35 1 0.0610 -3.5673 -1.8756 36 1 0.6694 -5.1991 -1.5055 37 1 2.9247 -4.1794 -2.1767 38 1 2.2640 -2.5291 -2.2706 39 1 4.0525 -2.7294 -0.0640 40 1 7.2641 -1.4166 -3.0809 41 1 8.3267 -1.5689 -1.6610 42 1 8.8260 -3.7988 -0.7261 43 1 9.1982 -6.1736 -1.2603 44 1 8.2704 -7.1299 -3.3311 45 1 6.9642 -5.7131 -4.8640 46 1 6.5856 -3.3403 -4.3262 47 1 5.6455 -2.5677 0.8113 48 1 7.4613 -2.3389 0.5820 49 1 7.0563 0.0139 -0.2750 50 1 5.2407 -0.2149 -0.0461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501783811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:38 Heat of formation + Delta-G solvation = 1.007183 kcal Electronic energy + Delta-G solvation = -31663.208414 eV Core-core repulsion = 27657.142698 eV Total energy + Delta-G solvation = -4006.065716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.19497 -38.93245 -38.25433 -36.60722 -35.25587 -33.60833 -32.29638 -31.36061 -30.81991 -30.30151 -27.22861 -27.21327 -25.70372 -23.35291 -23.03074 -22.56762 -22.30581 -21.64408 -21.12281 -19.69289 -18.93786 -17.30827 -16.67307 -16.25550 -15.89916 -15.60152 -15.20084 -15.03528 -14.87697 -14.62620 -14.48157 -14.30384 -13.90223 -13.69587 -13.44550 -13.35952 -13.11763 -12.97284 -12.88820 -12.43706 -12.25673 -12.02865 -11.65550 -11.48781 -11.41762 -11.28504 -11.20637 -10.96769 -10.89397 -10.63906 -10.50369 -10.39634 -10.20886 -10.08611 -9.89501 -9.50977 -9.27472 -9.10168 -8.85343 -8.63994 -8.46530 -8.18967 -6.59020 -5.89915 -3.46488 1.39032 1.47379 2.94385 3.28849 3.33757 3.36324 3.65887 3.80876 4.01090 4.35919 4.64109 4.66901 4.78504 4.81352 4.91374 5.01641 5.10900 5.17027 5.21176 5.25592 5.29337 5.52180 5.57231 5.65517 5.68676 5.71985 5.84135 5.85962 5.91892 5.94266 5.96849 6.11289 6.14045 6.16113 6.16504 6.21186 6.39206 6.41730 6.49739 6.50041 6.57879 6.63820 6.74152 6.81255 7.04797 7.08204 7.17081 7.34193 7.71035 8.03299 8.11166 8.37289 8.78096 9.06540 9.66214 10.29019 11.15718 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011914 B = 0.003964 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.708149 B = 7062.484453 C = 8564.661668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.013 3.987 3 Si 0.893 3.107 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.264 4.264 8 H 0.079 0.921 9 N -0.586 5.586 10 C 0.128 3.872 11 C 0.050 3.950 12 O -0.399 6.399 13 C 0.057 3.943 14 C 0.124 3.876 15 H 0.038 0.962 16 C 0.139 3.861 17 N -0.700 5.700 18 C 0.548 3.452 19 O -0.547 6.547 20 C -0.147 4.147 21 C -0.030 4.030 22 C -0.077 4.077 23 C -0.115 4.115 24 C -0.126 4.126 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.098 4.098 28 C -0.163 4.163 29 C -0.153 4.153 30 H 0.255 0.745 31 H 0.007 0.993 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.403 0.597 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.129 0.871 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.838 -7.644 -0.889 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.187 4.187 3 Si 0.722 3.278 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.393 4.393 8 H 0.096 0.904 9 N -0.312 5.312 10 C 0.003 3.997 11 C -0.027 4.027 12 O -0.318 6.318 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.056 0.944 16 C 0.015 3.985 17 N -0.351 5.351 18 C 0.334 3.666 19 O -0.425 6.425 20 C -0.150 4.150 21 C -0.067 4.067 22 C -0.077 4.077 23 C -0.133 4.133 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.116 4.116 28 C -0.200 4.200 29 C -0.190 4.190 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.241 0.759 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.147 0.853 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.495 -7.647 -1.688 15.603 hybrid contribution 0.278 1.214 0.375 1.301 sum 13.773 -6.433 -1.313 15.258 Atomic orbital electron populations 1.69892 1.05385 1.25720 1.52883 1.25301 0.95283 0.98481 0.99590 0.86526 0.79337 0.83644 0.78306 1.21527 1.20694 1.20492 1.19438 0.91671 0.83177 1.45043 0.90377 1.44126 1.39298 1.04742 1.43001 1.21585 0.87151 1.01205 0.89758 1.23096 0.97260 0.84900 0.97490 1.87753 1.58391 1.31470 1.54167 1.22838 0.89707 0.99586 0.90142 1.21556 0.93275 0.90924 0.92573 0.94397 1.21190 0.83614 0.97808 0.95876 1.45985 1.16302 1.62484 1.10348 1.19188 0.83740 0.77133 0.86545 1.90612 1.81571 1.55289 1.15021 1.21544 0.95217 1.06202 0.92024 1.19928 0.94437 0.92858 0.99502 1.19793 0.97386 0.95758 0.94719 1.20997 0.99290 0.93936 0.99034 1.21058 1.00683 0.95333 0.97322 1.21102 0.98784 0.99526 0.95075 1.21157 0.99020 0.94201 0.99703 1.21266 0.97980 0.95392 0.96972 1.23082 1.03415 0.99493 0.94026 1.23154 1.04538 0.91063 1.00252 0.93489 0.97529 0.87959 0.92127 0.91075 0.93282 0.90577 0.92848 0.90327 0.75933 0.89679 0.90443 0.86437 0.86476 0.86563 0.86382 0.85313 0.88148 0.87991 0.87814 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 11.22 55.49 0.62 -23.61 16 2 C 0.01 0.35 5.08 -17.43 -0.09 0.26 16 3 Si 0.89 20.68 29.57 -169.99 -5.03 15.65 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.48 8.00 -15.06 -0.12 -6.60 16 8 H 0.08 1.83 4.70 -52.49 -0.25 1.59 16 9 N -0.59 -13.48 2.98 -164.04 -0.49 -13.97 16 10 C 0.13 2.91 5.97 -3.31 -0.02 2.89 16 11 C 0.05 1.06 7.00 37.53 0.26 1.32 16 12 O -0.40 -8.31 10.74 -35.23 -0.38 -8.69 16 13 C 0.06 1.09 6.29 37.31 0.23 1.32 16 14 C 0.12 2.46 3.16 -67.42 -0.21 2.24 16 15 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 16 C 0.14 2.67 4.59 -4.04 -0.02 2.65 16 17 N -0.70 -12.63 3.27 -60.29 -0.20 -12.83 16 18 C 0.55 9.90 6.96 -10.99 -0.08 9.83 16 19 O -0.55 -11.41 15.20 5.56 0.08 -11.32 16 20 C -0.15 -2.08 2.06 -155.66 -0.32 -2.40 16 21 C -0.03 -0.37 4.92 -27.88 -0.14 -0.51 16 22 C -0.08 -0.99 4.82 -104.63 -0.50 -1.49 16 23 C -0.11 -1.30 9.72 -39.58 -0.38 -1.68 16 24 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 26 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 27 C -0.10 -1.35 8.90 -39.58 -0.35 -1.70 16 28 C -0.16 -1.93 9.67 -26.73 -0.26 -2.19 16 29 C -0.15 -2.03 9.93 -26.73 -0.27 -2.29 16 30 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.10 2.57 5.81 -51.93 -0.30 2.27 16 33 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.77 7.85 -51.93 -0.41 1.36 16 39 H 0.40 6.98 5.36 -40.82 -0.22 6.76 16 40 H 0.08 1.15 7.98 -51.93 -0.41 0.73 16 41 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 42 H 0.12 1.10 8.02 -52.48 -0.42 0.68 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 46 H 0.13 1.92 7.36 -52.48 -0.39 1.53 16 47 H 0.10 1.24 6.43 -51.93 -0.33 0.90 16 48 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 49 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.11 1.69 8.09 -51.93 -0.42 1.27 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -29.47 396.91 -10.63 -40.11 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -7.78 Total: 12.49 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -3.46 Total: -3.80 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.06 Total: -50.41 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.29 Total: -20.02 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.47 -10.63 -40.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501783811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.115 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds