Wall clock time and date at job start Wed Apr 1 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00451 * 2 1 4 4 H 1.48493 * 109.47016 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46909 * 120.00160 * 3 2 1 6 6 H 1.48498 * 109.46942 * 239.99847 * 3 2 1 7 7 C 1.38817 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99929 * 168.88486 * 7 2 1 9 9 N 1.36939 * 119.99876 * 348.88206 * 7 2 1 10 10 C 1.47152 * 120.97940 * 322.67457 * 9 7 2 11 11 C 1.53723 * 108.16025 * 129.43486 * 10 9 7 12 12 O 1.42965 * 109.14384 * 52.53551 * 11 10 9 13 13 C 1.42965 * 114.16722 * 297.28599 * 12 11 10 14 14 C 1.47145 * 120.98035 * 142.95917 * 9 7 2 15 15 H 1.09003 * 109.68606 * 110.79108 * 14 9 7 16 16 C 1.53000 * 109.68484 * 350.23319 * 14 9 7 17 17 N 1.46501 * 109.46896 * 63.53344 * 16 14 9 18 18 C 1.34774 * 120.00021 * 185.17496 * 17 16 14 19 19 O 1.21282 * 119.99933 * 4.84321 * 18 17 16 20 20 C 1.50698 * 120.00211 * 184.83856 * 18 17 16 21 21 C 1.53006 * 115.54858 * 152.37168 * 20 18 17 22 22 C 1.50701 * 109.47210 * 296.36768 * 21 20 18 23 23 C 1.38237 * 119.99777 * 274.93093 * 22 21 20 24 24 C 1.38233 * 119.99798 * 179.81404 * 23 22 21 25 25 C 1.38237 * 119.99937 * 0.41164 * 24 23 22 26 26 C 1.38238 * 120.00151 * 359.81582 * 25 24 23 27 27 C 1.38230 * 119.99984 * 95.20164 * 22 21 20 28 28 C 1.53001 * 117.49471 * 6.67070 * 20 18 17 29 29 C 1.53001 * 117.50069 * 298.04689 * 20 18 17 30 30 H 0.97008 * 119.99505 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.68328 * 249.20845 * 10 9 7 32 32 H 1.08996 * 109.68515 * 9.76973 * 10 9 7 33 33 H 1.08999 * 109.65506 * 292.57353 * 11 10 9 34 34 H 1.08997 * 109.44450 * 172.37108 * 11 10 9 35 35 H 1.08996 * 109.51248 * 302.66382 * 13 12 11 36 36 H 1.08995 * 109.55429 * 182.53125 * 13 12 11 37 37 H 1.09006 * 109.47413 * 183.53452 * 16 14 9 38 38 H 1.08999 * 109.46684 * 303.53354 * 16 14 9 39 39 H 0.96994 * 119.99928 * 5.17666 * 17 16 14 40 40 H 1.08998 * 109.47018 * 56.36842 * 21 20 18 41 41 H 1.09000 * 109.46668 * 176.36600 * 21 20 18 42 42 H 1.08004 * 119.99908 * 359.97438 * 23 22 21 43 43 H 1.07998 * 120.00347 * 180.20235 * 24 23 22 44 44 H 1.08002 * 120.00239 * 179.79291 * 25 24 23 45 45 H 1.07993 * 120.00486 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.00104 * 359.97438 * 27 22 21 47 47 H 1.08991 * 117.50151 * 359.97438 * 28 20 18 48 48 H 1.09006 * 117.49889 * 145.02165 * 28 20 18 49 49 H 1.09002 * 117.49563 * 214.97331 * 29 20 18 50 50 H 1.08994 * 117.49575 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6962 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0749 -1.2110 -0.1808 9 7 1.3446 -2.3771 0.2276 10 6 0.2436 -2.4471 1.2014 11 6 -0.9606 -3.1127 0.5160 12 8 -0.5449 -4.3525 -0.0620 13 6 0.4412 -4.2183 -1.0884 14 6 1.7135 -3.6081 -0.4892 15 1 2.1679 -4.3151 0.2050 16 6 2.7022 -3.2760 -1.6086 17 7 3.9388 -2.7480 -1.0270 18 6 4.9185 -2.2880 -1.8303 19 8 4.7425 -2.2294 -3.0288 20 6 6.2325 -1.8464 -1.2392 21 6 7.4467 -1.9729 -2.1615 22 6 7.6784 -3.4252 -2.4907 23 6 8.4157 -4.2193 -1.6324 24 6 8.6249 -5.5523 -1.9324 25 6 8.1041 -6.0892 -3.0950 26 6 7.3708 -5.2939 -3.9556 27 6 7.1583 -3.9617 -3.6536 28 6 6.4517 -2.0891 0.2555 29 6 6.2075 -0.6698 -0.2614 30 1 -0.4850 0.8402 -0.0004 31 1 0.5526 -3.0392 2.0629 32 1 -0.0258 -1.4415 1.5240 33 1 -1.3458 -2.4577 -0.2655 34 1 -1.7411 -3.2985 1.2538 35 1 0.0610 -3.5673 -1.8756 36 1 0.6694 -5.1991 -1.5055 37 1 2.9247 -4.1794 -2.1767 38 1 2.2640 -2.5291 -2.2706 39 1 4.0525 -2.7294 -0.0640 40 1 7.2641 -1.4166 -3.0809 41 1 8.3267 -1.5689 -1.6610 42 1 8.8260 -3.7988 -0.7261 43 1 9.1982 -6.1736 -1.2603 44 1 8.2704 -7.1299 -3.3311 45 1 6.9642 -5.7131 -4.8640 46 1 6.5856 -3.3403 -4.3262 47 1 5.6455 -2.5677 0.8113 48 1 7.4613 -2.3389 0.5820 49 1 7.0563 0.0139 -0.2750 50 1 5.2407 -0.2149 -0.0461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501783811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:36 Heat of formation + Delta-G solvation = -14.564362 kcal Electronic energy + Delta-G solvation = -31663.883647 eV Core-core repulsion = 27657.142698 eV Total energy + Delta-G solvation = -4006.740949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.44577 -40.18863 -39.65344 -37.80816 -36.91255 -35.32745 -33.43414 -32.91832 -32.02946 -31.68689 -29.04455 -28.15584 -27.26527 -25.19732 -24.33604 -23.61024 -23.25210 -23.07057 -22.18331 -21.39583 -20.37375 -18.79485 -17.92957 -17.47594 -17.34174 -17.25946 -16.58411 -16.37857 -16.17188 -15.98834 -15.87639 -15.66969 -15.49389 -15.22187 -14.93586 -14.64290 -14.28192 -14.22175 -14.01429 -13.91465 -13.36094 -13.19413 -13.11881 -13.07175 -12.96652 -12.72484 -12.48676 -12.41308 -12.21836 -12.16814 -11.96746 -11.86155 -11.84467 -11.52990 -11.23870 -10.94403 -10.94014 -10.64179 -10.33621 -9.78309 -9.72733 -9.53019 -8.47369 -7.86326 -5.43431 0.51265 0.58470 1.41059 1.44388 1.46673 1.62058 2.27755 2.46204 2.84487 2.98647 3.03860 3.30198 3.44654 3.61985 3.70260 3.85671 3.96253 4.05289 4.15328 4.19732 4.24791 4.25264 4.33064 4.38078 4.54889 4.57870 4.63330 4.65718 4.71028 4.72445 4.73673 4.76396 4.79331 4.93057 4.96754 4.98159 5.02174 5.13132 5.17031 5.23733 5.27240 5.40840 5.48138 5.56412 5.64765 5.69775 5.74080 5.83877 6.21087 6.33738 6.44661 6.66984 7.13672 7.36052 7.76576 8.36557 9.17006 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011914 B = 0.003964 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.708149 B = 7062.484453 C = 8564.661668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.039 4.039 3 Si 0.942 3.058 4 H -0.300 1.300 5 H -0.265 1.265 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.089 0.911 9 N -0.600 5.600 10 C 0.129 3.871 11 C 0.060 3.940 12 O -0.398 6.398 13 C 0.056 3.944 14 C 0.127 3.873 15 H 0.057 0.943 16 C 0.149 3.851 17 N -0.699 5.699 18 C 0.540 3.460 19 O -0.583 6.583 20 C -0.161 4.161 21 C -0.024 4.024 22 C -0.088 4.088 23 C -0.115 4.115 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.125 4.125 28 C -0.137 4.137 29 C -0.157 4.157 30 H 0.246 0.754 31 H 0.020 0.980 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.098 0.902 35 H 0.027 0.973 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.408 0.592 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.124 0.876 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.139 0.861 49 H 0.133 0.867 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.635 -9.494 1.010 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.235 4.235 3 Si 0.771 3.229 4 H -0.226 1.226 5 H -0.190 1.190 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.106 0.894 9 N -0.326 5.326 10 C 0.004 3.996 11 C -0.018 4.018 12 O -0.317 6.317 13 C -0.023 4.023 14 C 0.021 3.979 15 H 0.074 0.926 16 C 0.025 3.975 17 N -0.351 5.351 18 C 0.328 3.672 19 O -0.464 6.464 20 C -0.164 4.164 21 C -0.061 4.061 22 C -0.088 4.088 23 C -0.133 4.133 24 C -0.144 4.144 25 C -0.148 4.148 26 C -0.155 4.155 27 C -0.143 4.143 28 C -0.174 4.174 29 C -0.194 4.194 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.116 0.884 35 H 0.046 0.954 36 H 0.132 0.868 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.246 0.754 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.142 0.858 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.157 0.843 49 H 0.151 0.849 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.312 -9.514 0.233 18.886 hybrid contribution -0.579 1.696 -0.264 1.812 sum 15.733 -7.818 -0.031 17.569 Atomic orbital electron populations 1.70036 1.06336 1.25417 1.54996 1.25894 0.95904 1.00961 1.00761 0.85739 0.78101 0.80758 0.78299 1.22614 1.18970 1.21529 1.19768 0.92274 0.83731 1.42670 0.89407 1.44319 1.39310 1.05278 1.43687 1.21512 0.87722 1.00127 0.90285 1.22947 0.97243 0.84585 0.96998 1.87757 1.58715 1.30906 1.54341 1.22945 0.88866 1.01199 0.89263 1.21638 0.93720 0.89852 0.92722 0.92581 1.20982 0.84034 0.97317 0.95206 1.45977 1.15945 1.62561 1.10594 1.19963 0.84934 0.76162 0.86168 1.90595 1.82420 1.56618 1.16754 1.21490 0.93511 1.07694 0.93676 1.19923 0.94797 0.92846 0.98579 1.19890 0.98021 0.96127 0.94799 1.21298 0.98470 0.94080 0.99442 1.21465 1.00067 0.95517 0.97348 1.21425 0.97972 1.00526 0.94917 1.21334 0.99663 0.93883 1.00582 1.21221 0.99245 0.96082 0.97765 1.23236 1.05234 0.97630 0.91335 1.23219 1.04214 0.92073 0.99924 0.94420 0.96227 0.90513 0.95124 0.88428 0.95407 0.86774 0.91014 0.94396 0.75377 0.91890 0.87156 0.83733 0.83596 0.84249 0.85766 0.88061 0.88632 0.84348 0.84924 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.59 11.22 21.65 0.24 -51.34 16 2 C -0.04 -2.04 5.08 84.86 0.43 -1.61 16 3 Si 0.94 43.48 29.57 68.60 2.03 45.51 16 4 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 5 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.25 -12.62 8.00 84.03 0.67 -11.95 16 8 H 0.09 4.14 4.70 -2.91 -0.01 4.12 16 9 N -0.60 -27.59 2.98 -672.90 -2.01 -29.59 16 10 C 0.13 5.83 5.97 86.50 0.52 6.35 16 11 C 0.06 2.52 7.00 72.23 0.51 3.02 16 12 O -0.40 -16.03 10.74 -148.98 -1.60 -17.63 16 13 C 0.06 2.11 6.29 72.08 0.45 2.56 16 14 C 0.13 4.92 3.16 44.97 0.14 5.06 16 15 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 16 C 0.15 5.74 4.59 86.38 0.40 6.14 16 17 N -0.70 -25.03 3.27 -463.06 -1.52 -26.55 16 18 C 0.54 19.61 6.96 87.66 0.61 20.22 16 19 O -0.58 -25.36 15.20 -3.04 -0.05 -25.41 16 20 C -0.16 -4.32 2.06 -52.93 -0.11 -4.43 16 21 C -0.02 -0.57 4.92 29.85 0.15 -0.42 16 22 C -0.09 -2.15 4.82 -19.87 -0.10 -2.25 16 23 C -0.12 -2.21 9.72 22.27 0.22 -1.99 16 24 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 25 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 26 C -0.14 -3.28 10.05 22.27 0.22 -3.06 16 27 C -0.12 -3.51 8.90 22.27 0.20 -3.31 16 28 C -0.14 -2.78 9.67 30.60 0.30 -2.48 16 29 C -0.16 -3.82 9.93 30.60 0.30 -3.52 16 30 H 0.25 13.69 8.31 -92.70 -0.77 12.92 16 31 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.08 3.92 5.81 -2.39 -0.01 3.91 16 33 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 35 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 38 H 0.04 1.77 7.85 -2.39 -0.02 1.75 16 39 H 0.41 13.67 5.36 -92.71 -0.50 13.17 16 40 H 0.06 1.73 7.98 -2.39 -0.02 1.72 16 41 H 0.11 1.82 8.08 -2.39 -0.02 1.80 16 42 H 0.14 1.93 8.02 -2.91 -0.02 1.91 16 43 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.12 2.65 8.06 -2.91 -0.02 2.62 16 46 H 0.10 3.30 7.36 -2.91 -0.02 3.28 16 47 H 0.10 2.06 6.43 -2.39 -0.02 2.04 16 48 H 0.14 1.83 8.10 -2.38 -0.02 1.81 16 49 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.08 2.35 8.09 -2.39 -0.02 2.34 16 Total: -1.00 -66.71 396.91 2.90 -63.81 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: 0.44 Total: 37.23 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.36 Total: 3.97 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.28 Total: -107.49 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -1.65 Total: -43.03 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -66.71 2.90 -63.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501783811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.245 kcal (2) G-P(sol) polarization free energy of solvation -66.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds