Wall clock time and date at job start Wed Apr 1 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48497 * 109.46945 * 239.99662 * 3 2 1 5 5 H 1.48493 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46833 * 120.00009 * 3 2 1 7 7 C 1.38808 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00343 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00001 * 173.69092 * 9 7 2 11 11 C 1.52999 * 112.85135 * 294.88327 * 10 9 7 12 12 N 1.46507 * 109.46991 * 292.11253 * 11 10 9 13 13 C 1.34776 * 119.99670 * 180.85304 * 12 11 10 14 14 O 1.21278 * 120.00219 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99808 * 180.02562 * 13 12 11 16 16 O 1.42900 * 109.47042 * 180.02562 * 15 13 12 17 17 C 1.42897 * 113.99653 * 179.97438 * 16 15 13 18 18 C 1.50707 * 109.46732 * 179.97438 * 17 16 15 19 19 C 1.32562 * 119.99566 * 135.00481 * 18 17 16 20 20 C 1.47816 * 120.00006 * 179.97438 * 19 18 17 21 21 C 1.39536 * 120.13962 * 359.72264 * 20 19 18 22 22 C 1.37974 * 119.85874 * 179.67741 * 21 20 19 23 23 C 1.38347 * 120.13612 * 0.61803 * 22 21 20 24 24 C 1.38339 * 120.28655 * 359.68192 * 23 22 21 25 25 C 1.37966 * 120.14627 * 359.97438 * 24 23 22 26 26 C 1.53777 * 113.61623 * 66.08259 * 10 9 7 27 27 C 1.53955 * 87.02017 * 89.22960 * 26 10 9 28 28 C 1.53777 * 87.11385 * 25.36283 * 27 26 10 29 29 H 0.97002 * 120.00462 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99391 * 353.68988 * 9 7 2 31 31 H 1.09001 * 109.47408 * 172.11083 * 11 10 9 32 32 H 1.09003 * 109.46736 * 52.11034 * 11 10 9 33 33 H 0.96994 * 119.99828 * 0.85828 * 12 11 10 34 34 H 1.09004 * 109.46624 * 299.99958 * 15 13 12 35 35 H 1.08999 * 109.46697 * 59.99937 * 15 13 12 36 36 H 1.08994 * 109.47539 * 299.99711 * 17 16 15 37 37 H 1.08996 * 109.46908 * 60.00554 * 17 16 15 38 38 H 1.08003 * 120.00043 * 314.99950 * 18 17 16 39 39 H 1.08003 * 120.00392 * 359.97438 * 19 18 17 40 40 H 1.08008 * 120.07051 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.92988 * 180.32224 * 22 21 20 42 42 H 1.08005 * 119.85280 * 179.69602 * 23 22 21 43 43 H 1.08006 * 119.92788 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.07903 * 180.02562 * 25 24 23 45 45 H 1.09003 * 113.61748 * 203.74684 * 26 10 9 46 46 H 1.09003 * 113.61469 * 334.64815 * 26 10 9 47 47 H 1.09005 * 113.53624 * 270.81143 * 27 26 10 48 48 H 1.09002 * 113.66842 * 139.93944 * 27 26 10 49 49 H 1.09001 * 113.61613 * 220.09395 * 28 27 26 50 50 H 1.08997 * 113.61745 * 89.18715 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0515 -3.6529 -0.1383 11 6 2.7369 -3.7984 -1.4984 12 7 1.7209 -3.9312 -2.5455 13 6 2.0946 -4.0899 -3.8307 14 8 3.2718 -4.1231 -4.1203 15 6 1.0494 -4.2260 -4.9079 16 8 1.6898 -4.3825 -6.1758 17 6 0.7831 -4.5212 -7.2716 18 6 1.5627 -4.6783 -8.5517 19 6 1.2130 -5.6066 -9.4311 20 6 1.9772 -5.7603 -10.6869 21 6 3.0638 -4.9261 -10.9525 22 6 3.7771 -5.0791 -12.1236 23 6 3.4093 -6.0486 -13.0393 24 6 2.3293 -6.8748 -12.7849 25 6 1.6120 -6.7367 -11.6144 26 6 2.9721 -3.9688 1.0523 27 6 1.7642 -4.6736 1.6959 28 6 1.2267 -4.8847 0.2707 29 1 -0.4851 0.8400 -0.0004 30 1 0.3600 -2.3906 0.0925 31 1 3.3711 -4.6849 -1.4928 32 1 3.3470 -2.9165 -1.6939 33 1 0.7794 -3.9050 -2.3138 34 1 0.4293 -5.0990 -4.7042 35 1 0.4253 -3.3326 -4.9235 36 1 0.1576 -5.4002 -7.1166 37 1 0.1534 -3.6340 -7.3367 38 1 2.4063 -4.0345 -8.7527 39 1 0.3696 -6.2506 -9.2299 40 1 3.3487 -4.1654 -10.2407 41 1 4.6215 -4.4374 -12.3279 42 1 3.9680 -6.1611 -13.9568 43 1 2.0475 -7.6300 -13.5037 44 1 0.7693 -7.3826 -11.4167 45 1 3.7906 -4.6445 0.8042 46 1 3.3027 -3.0835 1.5955 47 1 1.1459 -4.0114 2.3021 48 1 2.0205 -5.6012 2.2078 49 1 0.1501 -4.7377 0.1838 50 1 1.5671 -5.8112 -0.1917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501968454.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:07 Heat of formation + Delta-G solvation = -7.259522 kcal Electronic energy + Delta-G solvation = -28266.702254 eV Core-core repulsion = 24260.278067 eV Total energy + Delta-G solvation = -4006.424187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.65181 -39.47655 -38.64519 -37.53422 -34.80679 -33.87391 -33.28037 -31.29158 -30.80150 -30.09578 -28.77769 -26.63361 -25.44685 -25.28937 -23.76216 -23.22250 -22.21293 -21.73538 -20.25329 -19.62045 -18.26224 -17.60410 -17.20015 -16.92446 -16.67249 -16.30809 -15.69989 -15.35825 -15.16409 -14.97610 -14.57648 -14.45183 -14.23529 -13.91147 -13.66131 -13.64349 -13.27219 -13.24353 -13.02766 -12.83813 -12.42101 -12.35777 -11.94714 -11.74334 -11.62710 -11.37471 -11.24618 -11.10505 -11.02723 -10.84764 -10.57798 -10.39008 -10.27259 -10.12363 -9.81909 -9.74918 -9.53311 -9.41484 -9.25937 -8.89323 -8.50966 -8.41338 -7.06702 -5.84982 -3.14700 0.59396 1.10405 2.13297 2.97294 3.11688 3.41315 3.45827 3.47538 3.62806 4.05291 4.48503 4.51297 4.54096 4.66141 4.75772 4.85647 4.96300 5.03526 5.10082 5.13343 5.13934 5.16540 5.25175 5.26550 5.28714 5.29843 5.34048 5.42244 5.52488 5.65013 5.71948 5.76425 5.97638 6.02828 6.10483 6.11455 6.17726 6.20892 6.29880 6.30338 6.37658 6.48658 6.53163 6.68044 6.69863 6.86137 6.93274 6.97771 7.06921 7.67812 7.95814 8.33911 8.63125 9.45256 9.98483 10.33866 11.36864 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.001733 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.247933 B =16155.032058 C =17240.831482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.905 3.095 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.699 5.699 10 C 0.173 3.827 11 C 0.122 3.878 12 N -0.704 5.704 13 C 0.510 3.490 14 O -0.533 6.533 15 C 0.044 3.956 16 O -0.358 6.358 17 C 0.088 3.912 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.052 4.052 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.151 4.151 27 C -0.129 4.129 28 C -0.144 4.144 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.400 0.600 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.054 0.946 49 H 0.065 0.935 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -14.984 -18.629 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.004 4.004 12 N -0.355 5.355 13 C 0.294 3.706 14 O -0.410 6.410 15 C -0.036 4.036 16 O -0.277 6.277 17 C 0.011 3.989 18 C -0.146 4.146 19 C -0.135 4.135 20 C -0.052 4.052 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.129 4.129 26 C -0.191 4.191 27 C -0.166 4.166 28 C -0.182 4.182 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.234 0.766 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.336 -14.832 -18.869 24.003 hybrid contribution -0.616 1.100 0.146 1.269 sum -0.279 -13.733 -18.722 23.220 Atomic orbital electron populations 1.69638 1.05051 1.25856 1.57367 1.24718 0.95481 0.97632 1.02604 0.86305 0.78614 0.83543 0.77974 1.21182 1.21740 1.21223 1.19066 0.91081 0.83640 1.42954 0.91162 1.42047 1.06089 0.99028 1.86787 1.20829 0.93058 0.87453 0.90674 1.21869 0.90402 1.00649 0.87432 1.45644 1.11038 1.72965 1.05873 1.20076 0.89677 0.77464 0.83373 1.90695 1.18535 1.49648 1.82100 1.22246 0.94780 1.02303 0.84266 1.88040 1.31952 1.94186 1.13482 1.21493 0.91627 1.00675 0.85057 1.23137 0.99833 0.98059 0.93605 1.21575 0.99870 0.98484 0.93599 1.19040 0.95686 0.96193 0.94313 1.21416 0.95134 0.99177 0.97446 1.21125 0.99769 0.98467 0.94203 1.21227 0.97418 0.96037 0.99464 1.21090 0.95983 0.99536 0.97290 1.21262 0.99880 0.97921 0.93820 1.23343 0.96362 1.00384 0.99003 1.22665 0.98528 0.99523 0.95905 1.23139 0.99858 0.97834 0.97373 0.93463 0.77936 0.92679 0.91273 0.76557 0.90500 0.90012 0.92432 0.91657 0.85877 0.86129 0.85497 0.85872 0.86133 0.85998 0.85849 0.91290 0.90682 0.90040 0.92721 0.91656 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.58 13.07 55.49 0.73 -25.86 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.15 9.04 -15.06 -0.14 -6.29 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.70 -15.72 5.18 -46.48 -0.24 -15.96 16 10 C 0.17 3.12 0.80 -131.01 -0.10 3.02 16 11 C 0.12 2.24 5.08 -4.04 -0.02 2.22 16 12 N -0.70 -11.72 5.42 -60.29 -0.33 -12.05 16 13 C 0.51 8.88 7.91 -10.98 -0.09 8.79 16 14 O -0.53 -11.59 16.50 -14.35 -0.24 -11.82 16 15 C 0.04 0.58 6.42 36.01 0.23 0.81 16 16 O -0.36 -5.22 9.86 -55.14 -0.54 -5.77 16 17 C 0.09 0.90 6.36 36.01 0.23 1.13 16 18 C -0.13 -1.31 9.31 -36.21 -0.34 -1.64 16 19 C -0.12 -1.06 9.51 -37.57 -0.36 -1.42 16 20 C -0.05 -0.50 5.87 -105.01 -0.62 -1.11 16 21 C -0.11 -1.08 9.40 -39.19 -0.37 -1.45 16 22 C -0.12 -0.98 10.03 -39.64 -0.40 -1.38 16 23 C -0.12 -0.94 10.04 -39.50 -0.40 -1.34 16 24 C -0.12 -0.91 10.03 -39.64 -0.40 -1.31 16 25 C -0.11 -0.91 9.79 -39.20 -0.38 -1.30 16 26 C -0.15 -2.54 7.29 -25.83 -0.19 -2.73 16 27 C -0.13 -1.95 8.00 -25.83 -0.21 -2.16 16 28 C -0.14 -2.13 7.05 -25.92 -0.18 -2.32 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 30 H 0.39 9.23 7.87 -40.82 -0.32 8.91 16 31 H 0.05 0.95 8.02 -51.93 -0.42 0.54 16 32 H 0.07 1.49 7.80 -51.93 -0.41 1.09 16 33 H 0.40 5.99 8.31 -40.82 -0.34 5.65 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.48 7.88 -51.93 -0.41 0.07 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.12 1.30 6.04 -52.48 -0.32 0.98 16 39 H 0.12 0.87 7.92 -52.48 -0.42 0.45 16 40 H 0.13 1.12 6.17 -52.48 -0.32 0.80 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 43 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.07 1.03 8.01 -51.93 -0.42 0.62 16 46 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 47 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 50 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 419.48 15.07 6.32 6.32 Total: -1.00 -32.65 419.48 -11.11 -43.76 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -7.96 Total: 13.13 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.82 Total: -8.77 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.16 Total: -53.86 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.78 Total: -17.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.65 -11.11 -43.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501968454.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.497 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds