Wall clock time and date at job start Wed Apr 1 2020 03:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48497 * 109.46945 * 239.99662 * 3 2 1 5 5 H 1.48493 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46833 * 120.00009 * 3 2 1 7 7 C 1.38808 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00343 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00001 * 173.69092 * 9 7 2 11 11 C 1.52999 * 112.85135 * 294.88327 * 10 9 7 12 12 N 1.46507 * 109.46991 * 292.11253 * 11 10 9 13 13 C 1.34776 * 119.99670 * 180.85304 * 12 11 10 14 14 O 1.21278 * 120.00219 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99808 * 180.02562 * 13 12 11 16 16 O 1.42900 * 109.47042 * 180.02562 * 15 13 12 17 17 C 1.42897 * 113.99653 * 179.97438 * 16 15 13 18 18 C 1.50707 * 109.46732 * 179.97438 * 17 16 15 19 19 C 1.32562 * 119.99566 * 135.00481 * 18 17 16 20 20 C 1.47816 * 120.00006 * 179.97438 * 19 18 17 21 21 C 1.39536 * 120.13962 * 359.72264 * 20 19 18 22 22 C 1.37974 * 119.85874 * 179.67741 * 21 20 19 23 23 C 1.38347 * 120.13612 * 0.61803 * 22 21 20 24 24 C 1.38339 * 120.28655 * 359.68192 * 23 22 21 25 25 C 1.37966 * 120.14627 * 359.97438 * 24 23 22 26 26 C 1.53777 * 113.61623 * 66.08259 * 10 9 7 27 27 C 1.53955 * 87.02017 * 89.22960 * 26 10 9 28 28 C 1.53777 * 87.11385 * 25.36283 * 27 26 10 29 29 H 0.97002 * 120.00462 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99391 * 353.68988 * 9 7 2 31 31 H 1.09001 * 109.47408 * 172.11083 * 11 10 9 32 32 H 1.09003 * 109.46736 * 52.11034 * 11 10 9 33 33 H 0.96994 * 119.99828 * 0.85828 * 12 11 10 34 34 H 1.09004 * 109.46624 * 299.99958 * 15 13 12 35 35 H 1.08999 * 109.46697 * 59.99937 * 15 13 12 36 36 H 1.08994 * 109.47539 * 299.99711 * 17 16 15 37 37 H 1.08996 * 109.46908 * 60.00554 * 17 16 15 38 38 H 1.08003 * 120.00043 * 314.99950 * 18 17 16 39 39 H 1.08003 * 120.00392 * 359.97438 * 19 18 17 40 40 H 1.08008 * 120.07051 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.92988 * 180.32224 * 22 21 20 42 42 H 1.08005 * 119.85280 * 179.69602 * 23 22 21 43 43 H 1.08006 * 119.92788 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.07903 * 180.02562 * 25 24 23 45 45 H 1.09003 * 113.61748 * 203.74684 * 26 10 9 46 46 H 1.09003 * 113.61469 * 334.64815 * 26 10 9 47 47 H 1.09005 * 113.53624 * 270.81143 * 27 26 10 48 48 H 1.09002 * 113.66842 * 139.93944 * 27 26 10 49 49 H 1.09001 * 113.61613 * 220.09395 * 28 27 26 50 50 H 1.08997 * 113.61745 * 89.18715 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0515 -3.6529 -0.1383 11 6 2.7369 -3.7984 -1.4984 12 7 1.7209 -3.9312 -2.5455 13 6 2.0946 -4.0899 -3.8307 14 8 3.2718 -4.1231 -4.1203 15 6 1.0494 -4.2260 -4.9079 16 8 1.6898 -4.3825 -6.1758 17 6 0.7831 -4.5212 -7.2716 18 6 1.5627 -4.6783 -8.5517 19 6 1.2130 -5.6066 -9.4311 20 6 1.9772 -5.7603 -10.6869 21 6 3.0638 -4.9261 -10.9525 22 6 3.7771 -5.0791 -12.1236 23 6 3.4093 -6.0486 -13.0393 24 6 2.3293 -6.8748 -12.7849 25 6 1.6120 -6.7367 -11.6144 26 6 2.9721 -3.9688 1.0523 27 6 1.7642 -4.6736 1.6959 28 6 1.2267 -4.8847 0.2707 29 1 -0.4851 0.8400 -0.0004 30 1 0.3600 -2.3906 0.0925 31 1 3.3711 -4.6849 -1.4928 32 1 3.3470 -2.9165 -1.6939 33 1 0.7794 -3.9050 -2.3138 34 1 0.4293 -5.0990 -4.7042 35 1 0.4253 -3.3326 -4.9235 36 1 0.1576 -5.4002 -7.1166 37 1 0.1534 -3.6340 -7.3367 38 1 2.4063 -4.0345 -8.7527 39 1 0.3696 -6.2506 -9.2299 40 1 3.3487 -4.1654 -10.2407 41 1 4.6215 -4.4374 -12.3279 42 1 3.9680 -6.1611 -13.9568 43 1 2.0475 -7.6300 -13.5037 44 1 0.7693 -7.3826 -11.4167 45 1 3.7906 -4.6445 0.8042 46 1 3.3027 -3.0835 1.5955 47 1 1.1459 -4.0114 2.3021 48 1 2.0205 -5.6012 2.2078 49 1 0.1501 -4.7377 0.1838 50 1 1.5671 -5.8112 -0.1917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501968454.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:06 Heat of formation + Delta-G solvation = -26.307222 kcal Electronic energy + Delta-G solvation = -28267.528225 eV Core-core repulsion = 24260.278067 eV Total energy + Delta-G solvation = -4007.250157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.00725 -40.13800 -39.93900 -38.61325 -35.53116 -35.32021 -35.19302 -31.97670 -31.88950 -31.49178 -30.01116 -27.80655 -26.71434 -26.35607 -25.56519 -23.85994 -23.11054 -22.85217 -21.57918 -20.37736 -19.71702 -19.11888 -18.40997 -18.09906 -17.71064 -17.26910 -16.82527 -16.52469 -16.22419 -16.05453 -15.93399 -15.62874 -15.53664 -15.13352 -15.04124 -14.68680 -14.29014 -14.18713 -14.05380 -13.89184 -13.71502 -13.27614 -13.16632 -13.04883 -12.94498 -12.89329 -12.56465 -12.34571 -12.20851 -11.99369 -11.93210 -11.75439 -11.59497 -11.47590 -11.30268 -11.01019 -10.86966 -10.69116 -10.67972 -9.97372 -9.87517 -9.08525 -8.97846 -7.94100 -5.20338 -0.07043 0.48783 1.43525 1.44905 1.46373 1.51378 1.62753 2.00580 2.54250 2.96568 3.09423 3.37776 3.72646 3.75574 3.82758 3.85549 3.86462 4.00714 4.09603 4.10562 4.17618 4.18968 4.23733 4.26453 4.28328 4.39897 4.45501 4.53371 4.61154 4.65180 4.67924 4.84460 4.90556 4.93378 5.01944 5.05150 5.12727 5.14719 5.31446 5.33802 5.43308 5.44648 5.50550 5.60290 5.61926 5.63509 5.71470 5.82562 6.06618 6.10482 6.30450 6.64371 7.29189 7.37011 8.10705 8.35148 9.27742 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.001733 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.247933 B =16155.032058 C =17240.831482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.064 4.064 3 Si 0.955 3.045 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.064 0.936 9 N -0.703 5.703 10 C 0.158 3.842 11 C 0.130 3.870 12 N -0.697 5.697 13 C 0.503 3.497 14 O -0.584 6.584 15 C 0.050 3.950 16 O -0.395 6.395 17 C 0.087 3.913 18 C -0.153 4.153 19 C -0.103 4.103 20 C -0.077 4.077 21 C -0.135 4.135 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.116 4.116 26 C -0.151 4.151 27 C -0.121 4.121 28 C -0.125 4.125 29 H 0.249 0.751 30 H 0.379 0.621 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.411 0.589 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.121 0.879 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.062 0.938 48 H 0.085 0.915 49 H 0.070 0.930 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 -17.526 -19.583 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.257 4.257 3 Si 0.785 3.215 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.208 1.208 7 C -0.357 4.357 8 H 0.082 0.918 9 N -0.342 5.342 10 C 0.066 3.934 11 C 0.004 3.996 12 N -0.348 5.348 13 C 0.289 3.711 14 O -0.465 6.465 15 C -0.029 4.029 16 O -0.314 6.314 17 C 0.012 3.988 18 C -0.171 4.171 19 C -0.121 4.121 20 C -0.077 4.077 21 C -0.152 4.152 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.133 4.133 26 C -0.191 4.191 27 C -0.158 4.158 28 C -0.162 4.162 29 H 0.058 0.942 30 H 0.212 0.788 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.247 0.753 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.161 0.839 40 H 0.138 0.862 41 H 0.153 0.847 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.111 0.889 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.104 0.896 49 H 0.089 0.911 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.623 -17.404 -19.812 26.378 hybrid contribution -0.225 1.794 0.357 1.842 sum -0.848 -15.610 -19.456 24.958 Atomic orbital electron populations 1.69744 1.05882 1.25755 1.59524 1.25287 0.96216 1.00071 1.04125 0.85496 0.77456 0.80795 0.77709 1.21618 1.22069 1.20754 1.19253 0.90948 0.85058 1.40407 0.91838 1.42063 1.05768 0.99736 1.86677 1.21125 0.94346 0.87158 0.90754 1.21676 0.90620 0.99343 0.87960 1.45608 1.11216 1.72335 1.05662 1.20936 0.89982 0.75988 0.84161 1.90666 1.20952 1.51983 1.82865 1.22276 0.93190 1.04812 0.82615 1.87995 1.34214 1.94544 1.14635 1.21678 0.91266 1.02321 0.83576 1.23112 1.00417 0.99121 0.94492 1.21785 0.99790 0.97664 0.92890 1.19272 0.96183 0.97096 0.95127 1.21566 0.95954 0.99640 0.98087 1.21377 1.00205 0.99174 0.94130 1.21576 0.97541 0.95395 0.99969 1.21462 0.95588 0.99834 0.97513 1.21570 1.00449 0.97623 0.93690 1.23375 0.97611 1.00077 0.98086 1.22594 0.96944 1.00159 0.96142 1.23089 0.99738 0.96788 0.96609 0.94166 0.78791 0.91324 0.95443 0.75349 0.86495 0.88443 0.89893 0.90579 0.87462 0.83910 0.86157 0.84689 0.83922 0.83507 0.83842 0.88937 0.93499 0.91971 0.89631 0.91084 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.49 13.07 21.65 0.28 -55.21 16 2 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 3 Si 0.95 46.14 29.55 68.60 2.03 48.16 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 5 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.22 -11.85 9.04 84.03 0.76 -11.09 16 8 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 9 N -0.70 -31.69 5.18 -300.97 -1.56 -33.25 16 10 C 0.16 5.54 0.80 4.13 0.00 5.55 16 11 C 0.13 4.74 5.08 86.38 0.44 5.18 16 12 N -0.70 -22.59 5.42 -463.04 -2.51 -25.10 16 13 C 0.50 17.29 7.91 87.66 0.69 17.98 16 14 O -0.58 -25.91 16.50 16.01 0.26 -25.65 16 15 C 0.05 1.23 6.42 71.24 0.46 1.69 16 16 O -0.39 -11.25 9.86 -129.94 -1.28 -12.53 16 17 C 0.09 1.68 6.36 71.24 0.45 2.13 16 18 C -0.15 -3.12 9.31 24.54 0.23 -2.89 16 19 C -0.10 -1.78 9.51 23.66 0.22 -1.55 16 20 C -0.08 -1.42 5.87 -20.12 -0.12 -1.54 16 21 C -0.13 -2.62 9.40 22.52 0.21 -2.41 16 22 C -0.13 -2.15 10.03 22.23 0.22 -1.93 16 23 C -0.13 -1.74 10.04 22.32 0.22 -1.52 16 24 C -0.13 -1.64 10.03 22.23 0.22 -1.41 16 25 C -0.12 -1.71 9.79 22.52 0.22 -1.49 16 26 C -0.15 -4.91 7.29 31.18 0.23 -4.68 16 27 C -0.12 -3.37 8.00 31.18 0.25 -3.12 16 28 C -0.12 -3.32 7.05 31.12 0.22 -3.10 16 29 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.38 18.12 7.87 -92.71 -0.73 17.39 16 31 H 0.07 2.31 8.02 -2.39 -0.02 2.29 16 32 H 0.03 1.22 7.80 -2.39 -0.02 1.20 16 33 H 0.41 11.63 8.31 -92.71 -0.77 10.86 16 34 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 1.15 7.88 -2.39 -0.02 1.13 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 2.45 6.04 -2.91 -0.02 2.44 16 39 H 0.14 1.72 7.92 -2.91 -0.02 1.69 16 40 H 0.12 2.36 6.17 -2.91 -0.02 2.34 16 41 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 43 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 44 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.09 2.56 8.01 -2.39 -0.02 2.54 16 46 H 0.05 1.77 7.87 -2.39 -0.02 1.76 16 47 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 50 H 0.10 2.30 8.10 -2.39 -0.02 2.28 16 Total: -1.00 -73.27 419.48 2.07 -71.19 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: -0.56 Total: 39.69 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.40 Total: -7.30 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -3.79 Total: -113.56 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -1.02 Total: -38.18 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -73.27 2.07 -71.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501968454.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.886 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds