Wall clock time and date at job start Wed Apr 1 2020 02:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00268 * 2 1 4 4 H 1.48499 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47061 * 300.00197 * 3 2 1 6 6 H 1.48502 * 109.47113 * 59.99908 * 3 2 1 7 7 C 1.38819 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00089 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99352 * 174.86902 * 9 7 2 11 11 C 1.52994 * 112.85499 * 65.49006 * 10 9 7 12 12 N 1.46497 * 109.47492 * 47.17097 * 11 10 9 13 13 C 1.34775 * 120.00493 * 185.21901 * 12 11 10 14 14 O 1.21288 * 119.99711 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00387 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47455 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.33541 * 305.31861 * 16 15 13 18 18 O 1.42725 * 109.34026 * 64.99655 * 16 15 13 19 19 C 1.43220 * 113.11768 * 172.01051 * 18 16 15 20 20 C 1.52961 * 108.48290 * 289.28902 * 19 18 16 21 21 C 1.50753 * 109.76644 * 49.15833 * 20 19 18 22 22 C 1.38601 * 118.76018 * 163.19323 * 21 20 19 23 23 C 1.38070 * 120.26888 * 179.79920 * 22 21 20 24 24 C 1.38254 * 119.86661 * 359.97438 * 23 22 21 25 25 C 1.38050 * 119.89995 * 0.09650 * 24 23 22 26 26 C 1.37905 * 121.35118 * 343.14500 * 21 20 19 27 27 C 1.53790 * 113.60783 * 196.68162 * 10 9 7 28 28 C 1.53953 * 87.01810 * 89.23043 * 27 10 9 29 29 C 1.53774 * 87.11395 * 25.36123 * 28 27 10 30 30 H 0.97002 * 119.99818 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99865 * 354.86679 * 9 7 2 32 32 H 1.09000 * 109.47576 * 167.17439 * 11 10 9 33 33 H 1.09005 * 109.46877 * 287.17793 * 11 10 9 34 34 H 0.97007 * 119.99742 * 5.21833 * 12 11 10 35 35 H 1.09010 * 109.47208 * 300.00475 * 15 13 12 36 36 H 1.09007 * 109.47182 * 59.99379 * 15 13 12 37 37 H 1.08997 * 109.63176 * 48.98904 * 19 18 16 38 38 H 1.09004 * 109.63120 * 169.38344 * 19 18 16 39 39 H 1.08993 * 109.42738 * 169.25000 * 20 19 18 40 40 H 1.09006 * 109.42098 * 289.13475 * 20 19 18 41 41 H 1.07992 * 119.86272 * 359.80373 * 22 21 20 42 42 H 1.07998 * 120.06436 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.04988 * 180.11705 * 24 23 22 44 44 H 1.07996 * 119.85573 * 179.97438 * 25 24 23 45 45 H 1.09002 * 113.61370 * 203.74594 * 27 10 9 46 46 H 1.08995 * 113.61257 * 334.65161 * 27 10 9 47 47 H 1.09008 * 113.53654 * 270.80846 * 28 27 10 48 48 H 1.09004 * 113.74240 * 139.94264 * 28 27 10 49 49 H 1.09002 * 113.61672 * 220.08858 * 29 28 27 50 50 H 1.09001 * 113.69308 * 89.19711 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3882 0.0005 10 6 2.0536 -3.6543 -0.1124 11 6 2.9533 -3.9319 1.0935 12 7 2.2026 -3.6922 2.3285 13 6 2.8246 -3.7716 3.5215 14 8 4.0061 -4.0411 3.5726 15 6 2.0522 -3.5256 4.7918 16 6 2.9866 -3.6757 5.9940 17 1 3.4707 -4.6515 5.9551 18 8 3.9808 -2.6527 5.9507 19 6 4.7891 -2.6037 7.1320 20 6 3.9334 -2.0727 8.2834 21 6 2.6278 -2.8243 8.3370 22 6 1.8656 -2.7553 9.4926 23 6 0.6626 -3.4281 9.5741 24 6 0.2163 -4.1733 8.4985 25 6 0.9756 -4.2438 7.3477 26 6 2.1848 -3.5705 7.2652 27 6 1.1619 -4.8450 -0.5027 28 6 1.4598 -4.4838 -1.9693 29 6 2.7616 -3.8393 -1.4649 30 1 -0.4850 0.8401 0.0004 31 1 0.3583 -2.3897 0.0753 32 1 3.2871 -4.9693 1.0668 33 1 3.8192 -3.2707 1.0606 34 1 1.2578 -3.4763 2.2875 35 1 1.6396 -2.5167 4.7766 36 1 1.2405 -4.2489 4.8694 37 1 5.1467 -3.6048 7.3728 38 1 5.6387 -1.9411 6.9671 39 1 4.4677 -2.2067 9.2239 40 1 3.7340 -1.0124 8.1277 41 1 2.2140 -2.1728 10.3326 42 1 0.0712 -3.3717 10.4760 43 1 -0.7251 -4.6993 8.5584 44 1 0.6265 -4.8264 6.5081 45 1 1.5662 -5.8109 -0.2001 46 1 0.1159 -4.7168 -0.2243 47 1 0.7545 -3.7691 -2.3935 48 1 1.6215 -5.3504 -2.6105 49 1 3.0053 -2.9004 -1.9622 50 1 3.6051 -4.5286 -1.4255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502019213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:22 Heat of formation + Delta-G solvation = -27.043721 kcal Electronic energy + Delta-G solvation = -30474.053183 eV Core-core repulsion = 26466.771089 eV Total energy + Delta-G solvation = -4007.282094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.59762 -39.32440 -38.34793 -37.42616 -33.87895 -33.70294 -33.18117 -32.30283 -30.24732 -29.91103 -28.77601 -26.91278 -25.23745 -24.40301 -23.90169 -23.65993 -22.16331 -21.34476 -20.14923 -19.74754 -18.19366 -17.46794 -17.10702 -16.69084 -16.41505 -15.78626 -15.59707 -15.37712 -14.97518 -14.57659 -14.40364 -14.35383 -14.03627 -13.89368 -13.64626 -13.31386 -13.24733 -13.09576 -12.79958 -12.49627 -12.34449 -12.23080 -11.99997 -11.83691 -11.63977 -11.34107 -11.19094 -11.04261 -10.99551 -10.80492 -10.66562 -10.34714 -10.15481 -10.10728 -9.67998 -9.60808 -9.45228 -9.32148 -8.93330 -8.86970 -8.73501 -8.33480 -7.04119 -5.81772 -3.11362 1.14485 1.19113 3.18407 3.42591 3.50148 3.50971 3.51959 3.77494 3.81517 4.48224 4.52516 4.56919 4.66070 4.76865 4.93147 5.00387 5.11847 5.18178 5.21808 5.26583 5.27983 5.28268 5.33450 5.38680 5.48781 5.52308 5.55439 5.59530 5.70091 5.77042 5.80112 5.82518 5.91506 5.98060 6.10543 6.15605 6.22677 6.26710 6.32624 6.36323 6.42259 6.43145 6.54697 6.78291 6.80554 6.91231 7.04096 7.18353 7.21809 7.73954 8.16770 8.36797 8.82499 9.48645 10.01185 10.36596 11.40224 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.003012 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.548384 B = 9293.646724 C =10206.878672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.230 4.230 8 H 0.070 0.930 9 N -0.699 5.699 10 C 0.173 3.827 11 C 0.124 3.876 12 N -0.702 5.702 13 C 0.512 3.488 14 O -0.547 6.547 15 C -0.134 4.134 16 C 0.150 3.850 17 H 0.078 0.922 18 O -0.352 6.352 19 C 0.060 3.940 20 C -0.117 4.117 21 C -0.071 4.071 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.110 4.110 26 C -0.111 4.111 27 C -0.144 4.144 28 C -0.129 4.129 29 C -0.151 4.151 30 H 0.254 0.746 31 H 0.386 0.614 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.402 0.598 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -10.916 15.892 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.361 4.361 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.003 4.003 12 N -0.352 5.352 13 C 0.298 3.702 14 O -0.425 6.425 15 C -0.174 4.174 16 C 0.092 3.908 17 H 0.095 0.905 18 O -0.270 6.270 19 C -0.017 4.017 20 C -0.154 4.154 21 C -0.071 4.071 22 C -0.138 4.138 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.111 4.111 27 C -0.182 4.182 28 C -0.166 4.166 29 C -0.191 4.191 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.237 0.763 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.072 0.928 49 H 0.093 0.907 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.609 -10.814 15.726 19.263 hybrid contribution -0.479 1.103 0.294 1.238 sum 2.130 -9.711 16.020 18.854 Atomic orbital electron populations 1.69658 1.05019 1.25579 1.57734 1.24695 0.95443 0.97559 1.02755 0.86179 0.79064 0.84278 0.77101 1.20491 1.21932 1.21907 1.19137 0.91053 0.83533 1.42386 0.91172 1.42071 1.05813 0.99017 1.87104 1.20836 0.92332 0.87559 0.91259 1.21735 0.95627 0.98829 0.84116 1.45710 1.14035 1.70243 1.05242 1.20257 0.87743 0.77239 0.84992 1.90663 1.15605 1.48829 1.87414 1.21782 0.98298 1.05520 0.91829 1.20502 0.87810 0.92514 0.89982 0.90460 1.88236 1.46572 1.54240 1.37929 1.22563 0.93329 1.00905 0.84918 1.21180 0.93603 1.00522 1.00121 1.19536 0.96751 0.97376 0.93400 1.21058 0.95152 1.00155 0.97430 1.21104 0.96297 0.97608 0.98752 1.21097 0.99873 0.99609 0.93470 1.21107 0.93960 0.99417 0.98282 1.20304 0.96300 0.98377 0.96157 1.23220 1.00035 0.97735 0.97166 1.22659 0.98744 0.99651 0.95571 1.23300 0.96093 1.00834 0.98915 0.93594 0.77931 0.93012 0.91940 0.76260 0.87714 0.87779 0.92849 0.88337 0.89903 0.89562 0.86090 0.86086 0.85891 0.85572 0.90528 0.91717 0.90044 0.92822 0.90685 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.81 13.06 55.49 0.72 -26.08 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.23 -6.03 9.27 -15.05 -0.14 -6.17 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.70 -15.85 4.51 -46.48 -0.21 -16.06 16 10 C 0.17 3.18 0.92 -131.01 -0.12 3.06 16 11 C 0.12 2.27 5.03 -4.05 -0.02 2.25 16 12 N -0.70 -12.35 5.37 -60.30 -0.32 -12.67 16 13 C 0.51 9.08 7.71 -10.99 -0.08 8.99 16 14 O -0.55 -11.42 15.40 -8.99 -0.14 -11.56 16 15 C -0.13 -1.89 5.11 -27.89 -0.14 -2.04 16 16 C 0.15 2.11 2.28 -27.91 -0.06 2.05 16 17 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 18 O -0.35 -5.64 9.66 -49.77 -0.48 -6.12 16 19 C 0.06 0.71 6.85 37.14 0.25 0.97 16 20 C -0.12 -1.20 6.00 -27.88 -0.17 -1.36 16 21 C -0.07 -0.82 5.78 -104.58 -0.60 -1.42 16 22 C -0.12 -1.19 9.67 -39.51 -0.38 -1.58 16 23 C -0.12 -1.11 10.05 -39.64 -0.40 -1.51 16 24 C -0.12 -1.17 10.05 -39.64 -0.40 -1.57 16 25 C -0.11 -1.17 9.08 -39.50 -0.36 -1.53 16 26 C -0.11 -1.37 5.46 -104.61 -0.57 -1.94 16 27 C -0.14 -2.21 7.38 -25.82 -0.19 -2.40 16 28 C -0.13 -2.04 8.00 -25.83 -0.21 -2.24 16 29 C -0.15 -2.64 7.29 -25.92 -0.19 -2.82 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.39 9.30 7.87 -40.82 -0.32 8.98 16 32 H 0.05 0.88 7.91 -51.93 -0.41 0.47 16 33 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 34 H 0.40 6.83 8.07 -40.82 -0.33 6.50 16 35 H 0.10 1.56 8.14 -51.92 -0.42 1.14 16 36 H 0.10 1.12 6.30 -51.92 -0.33 0.79 16 37 H 0.05 0.59 8.07 -51.93 -0.42 0.17 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.13 1.13 6.45 -52.49 -0.34 0.79 16 45 H 0.08 1.04 7.94 -51.93 -0.41 0.63 16 46 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 47 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 1.48 7.85 -51.93 -0.41 1.07 16 50 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 402.19 15.07 6.06 6.06 Total: -1.00 -32.03 402.19 -11.26 -43.29 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -7.99 Total: 15.40 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.88 Total: -9.60 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.19 Total: -54.82 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.62 Total: -17.68 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.03 -11.26 -43.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502019213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.244 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds