Wall clock time and date at job start Wed Apr 1 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00268 * 2 1 4 4 H 1.48499 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47061 * 300.00197 * 3 2 1 6 6 H 1.48502 * 109.47113 * 59.99908 * 3 2 1 7 7 C 1.38819 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00089 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99352 * 174.86902 * 9 7 2 11 11 C 1.52994 * 112.85499 * 65.49006 * 10 9 7 12 12 N 1.46497 * 109.47492 * 47.17097 * 11 10 9 13 13 C 1.34775 * 120.00493 * 185.21901 * 12 11 10 14 14 O 1.21288 * 119.99711 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00387 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47455 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.33541 * 305.31861 * 16 15 13 18 18 O 1.42725 * 109.34026 * 64.99655 * 16 15 13 19 19 C 1.43220 * 113.11768 * 172.01051 * 18 16 15 20 20 C 1.52961 * 108.48290 * 289.28902 * 19 18 16 21 21 C 1.50753 * 109.76644 * 49.15833 * 20 19 18 22 22 C 1.38601 * 118.76018 * 163.19323 * 21 20 19 23 23 C 1.38070 * 120.26888 * 179.79920 * 22 21 20 24 24 C 1.38254 * 119.86661 * 359.97438 * 23 22 21 25 25 C 1.38050 * 119.89995 * 0.09650 * 24 23 22 26 26 C 1.37905 * 121.35118 * 343.14500 * 21 20 19 27 27 C 1.53790 * 113.60783 * 196.68162 * 10 9 7 28 28 C 1.53953 * 87.01810 * 89.23043 * 27 10 9 29 29 C 1.53774 * 87.11395 * 25.36123 * 28 27 10 30 30 H 0.97002 * 119.99818 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99865 * 354.86679 * 9 7 2 32 32 H 1.09000 * 109.47576 * 167.17439 * 11 10 9 33 33 H 1.09005 * 109.46877 * 287.17793 * 11 10 9 34 34 H 0.97007 * 119.99742 * 5.21833 * 12 11 10 35 35 H 1.09010 * 109.47208 * 300.00475 * 15 13 12 36 36 H 1.09007 * 109.47182 * 59.99379 * 15 13 12 37 37 H 1.08997 * 109.63176 * 48.98904 * 19 18 16 38 38 H 1.09004 * 109.63120 * 169.38344 * 19 18 16 39 39 H 1.08993 * 109.42738 * 169.25000 * 20 19 18 40 40 H 1.09006 * 109.42098 * 289.13475 * 20 19 18 41 41 H 1.07992 * 119.86272 * 359.80373 * 22 21 20 42 42 H 1.07998 * 120.06436 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.04988 * 180.11705 * 24 23 22 44 44 H 1.07996 * 119.85573 * 179.97438 * 25 24 23 45 45 H 1.09002 * 113.61370 * 203.74594 * 27 10 9 46 46 H 1.08995 * 113.61257 * 334.65161 * 27 10 9 47 47 H 1.09008 * 113.53654 * 270.80846 * 28 27 10 48 48 H 1.09004 * 113.74240 * 139.94264 * 28 27 10 49 49 H 1.09002 * 113.61672 * 220.08858 * 29 28 27 50 50 H 1.09001 * 113.69308 * 89.19711 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3882 0.0005 10 6 2.0536 -3.6543 -0.1124 11 6 2.9533 -3.9319 1.0935 12 7 2.2026 -3.6922 2.3285 13 6 2.8246 -3.7716 3.5215 14 8 4.0061 -4.0411 3.5726 15 6 2.0522 -3.5256 4.7918 16 6 2.9866 -3.6757 5.9940 17 1 3.4707 -4.6515 5.9551 18 8 3.9808 -2.6527 5.9507 19 6 4.7891 -2.6037 7.1320 20 6 3.9334 -2.0727 8.2834 21 6 2.6278 -2.8243 8.3370 22 6 1.8656 -2.7553 9.4926 23 6 0.6626 -3.4281 9.5741 24 6 0.2163 -4.1733 8.4985 25 6 0.9756 -4.2438 7.3477 26 6 2.1848 -3.5705 7.2652 27 6 1.1619 -4.8450 -0.5027 28 6 1.4598 -4.4838 -1.9693 29 6 2.7616 -3.8393 -1.4649 30 1 -0.4850 0.8401 0.0004 31 1 0.3583 -2.3897 0.0753 32 1 3.2871 -4.9693 1.0668 33 1 3.8192 -3.2707 1.0606 34 1 1.2578 -3.4763 2.2875 35 1 1.6396 -2.5167 4.7766 36 1 1.2405 -4.2489 4.8694 37 1 5.1467 -3.6048 7.3728 38 1 5.6387 -1.9411 6.9671 39 1 4.4677 -2.2067 9.2239 40 1 3.7340 -1.0124 8.1277 41 1 2.2140 -2.1728 10.3326 42 1 0.0712 -3.3717 10.4760 43 1 -0.7251 -4.6993 8.5584 44 1 0.6265 -4.8264 6.5081 45 1 1.5662 -5.8109 -0.2001 46 1 0.1159 -4.7168 -0.2243 47 1 0.7545 -3.7691 -2.3935 48 1 1.6215 -5.3504 -2.6105 49 1 3.0053 -2.9004 -1.9622 50 1 3.6051 -4.5286 -1.4255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502019213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:21 Heat of formation + Delta-G solvation = -45.848230 kcal Electronic energy + Delta-G solvation = -30474.868608 eV Core-core repulsion = 26466.771089 eV Total energy + Delta-G solvation = -4008.097519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.56018 -40.70799 -39.72637 -38.39473 -35.34054 -35.06496 -34.73693 -33.19782 -31.90065 -31.04013 -29.83417 -28.26999 -26.68375 -25.80254 -25.19661 -24.70413 -23.26355 -22.53637 -21.15211 -20.99303 -19.69429 -19.10441 -18.49141 -17.89718 -17.44199 -16.99349 -16.77661 -16.45134 -16.30773 -16.06651 -15.73953 -15.55128 -15.32727 -15.12012 -14.97014 -14.61258 -14.39487 -14.17352 -14.10614 -13.81138 -13.43920 -13.24826 -13.07809 -13.00088 -12.98526 -12.93297 -12.65268 -12.49528 -12.37829 -12.10873 -11.98428 -11.86470 -11.61241 -11.55113 -11.42494 -10.98562 -10.86976 -10.69244 -10.54130 -9.84186 -9.70180 -9.54539 -8.98232 -7.94036 -5.20052 0.35854 0.44239 1.42103 1.45405 1.52489 1.77278 2.38176 2.55121 2.74172 2.87392 3.38118 3.57111 3.65933 3.78170 3.82030 3.82848 3.90852 3.97995 4.03626 4.11389 4.13760 4.22179 4.25586 4.29487 4.34360 4.42045 4.58762 4.61170 4.66553 4.70518 4.81920 4.85193 4.88845 4.92241 4.93380 4.96406 5.00656 5.08118 5.15045 5.16673 5.34946 5.43660 5.51396 5.53610 5.59689 5.63202 5.69587 5.75426 6.07877 6.22243 6.30702 6.73989 7.37374 7.40310 8.10191 8.34878 9.28294 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.003012 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.548384 B = 9293.646724 C =10206.878672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.061 4.061 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.214 4.214 8 H 0.059 0.941 9 N -0.703 5.703 10 C 0.158 3.842 11 C 0.131 3.869 12 N -0.701 5.701 13 C 0.508 3.492 14 O -0.582 6.582 15 C -0.126 4.126 16 C 0.153 3.847 17 H 0.067 0.933 18 O -0.390 6.390 19 C 0.052 3.948 20 C -0.111 4.111 21 C -0.090 4.090 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.119 4.119 26 C -0.132 4.132 27 C -0.125 4.125 28 C -0.121 4.121 29 C -0.152 4.152 30 H 0.249 0.751 31 H 0.379 0.621 32 H 0.072 0.928 33 H 0.026 0.974 34 H 0.406 0.594 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.139 0.861 45 H 0.106 0.894 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.085 0.915 49 H 0.043 0.957 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -12.589 17.302 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.254 4.254 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.347 4.347 8 H 0.077 0.923 9 N -0.342 5.342 10 C 0.067 3.933 11 C 0.004 3.996 12 N -0.351 5.351 13 C 0.295 3.705 14 O -0.462 6.462 15 C -0.165 4.165 16 C 0.095 3.905 17 H 0.085 0.915 18 O -0.309 6.309 19 C -0.024 4.024 20 C -0.148 4.148 21 C -0.091 4.091 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.132 4.132 27 C -0.163 4.163 28 C -0.158 4.158 29 C -0.192 4.192 30 H 0.058 0.942 31 H 0.212 0.788 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.242 0.758 35 H 0.114 0.886 36 H 0.157 0.843 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.157 0.843 45 H 0.125 0.875 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.104 0.896 49 H 0.062 0.938 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.874 -12.516 17.132 21.299 hybrid contribution -0.174 1.548 -0.120 1.563 sum 1.700 -10.968 17.012 20.312 Atomic orbital electron populations 1.69754 1.05825 1.25554 1.59833 1.25215 0.96116 0.99840 1.04260 0.85409 0.78135 0.81684 0.76601 1.20356 1.21993 1.22428 1.19216 0.90607 0.84947 1.39884 0.92327 1.42076 1.05482 0.99681 1.87003 1.21129 0.93393 0.87159 0.91616 1.21628 0.94448 0.99062 0.84467 1.45740 1.14118 1.70034 1.05159 1.20886 0.87525 0.76178 0.85915 1.90640 1.17233 1.50420 1.87956 1.21812 0.98803 1.05872 0.90047 1.20445 0.87642 0.91559 0.90893 0.91544 1.88165 1.47615 1.55005 1.40137 1.22775 0.93575 1.01514 0.84556 1.21148 0.93293 0.99906 1.00441 1.19792 0.97548 0.97761 0.93950 1.21341 0.95286 1.00303 0.97412 1.21499 0.96135 0.96584 0.99616 1.21442 1.00554 0.99457 0.92989 1.21324 0.93546 0.99394 0.99416 1.20245 0.97140 1.00160 0.95658 1.23175 0.99610 0.97287 0.96184 1.22577 0.96824 1.00024 0.96422 1.23332 0.97861 1.00266 0.97741 0.94177 0.78757 0.90953 0.95507 0.75803 0.88610 0.84315 0.92477 0.87621 0.87291 0.90011 0.84023 0.83486 0.83512 0.84286 0.87528 0.91457 0.92320 0.89649 0.93781 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.04 13.06 21.65 0.28 -55.76 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.95 46.87 29.55 68.60 2.03 48.90 16 4 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 7 C -0.21 -11.44 9.27 84.03 0.78 -10.66 16 8 H 0.06 3.23 7.83 -2.91 -0.02 3.21 16 9 N -0.70 -32.08 4.51 -300.96 -1.36 -33.44 16 10 C 0.16 5.70 0.92 4.13 0.00 5.70 16 11 C 0.13 4.76 5.03 86.38 0.43 5.19 16 12 N -0.70 -24.51 5.37 -463.07 -2.49 -27.00 16 13 C 0.51 18.14 7.71 87.66 0.68 18.82 16 14 O -0.58 -24.84 15.40 10.85 0.17 -24.68 16 15 C -0.13 -3.54 5.11 29.84 0.15 -3.38 16 16 C 0.15 4.35 2.28 29.83 0.07 4.41 16 17 H 0.07 1.96 7.94 -2.39 -0.02 1.94 16 18 O -0.39 -12.92 9.66 -135.08 -1.30 -14.23 16 19 C 0.05 1.26 6.85 71.97 0.49 1.75 16 20 C -0.11 -2.19 6.00 29.85 0.18 -2.01 16 21 C -0.09 -2.00 5.78 -19.84 -0.11 -2.11 16 22 C -0.13 -2.23 9.67 22.32 0.22 -2.01 16 23 C -0.12 -1.90 10.05 22.23 0.22 -1.68 16 24 C -0.13 -2.09 10.05 22.23 0.22 -1.87 16 25 C -0.12 -2.35 9.08 22.32 0.20 -2.15 16 26 C -0.13 -3.17 5.46 -19.86 -0.11 -3.27 16 27 C -0.12 -3.50 7.38 31.18 0.23 -3.27 16 28 C -0.12 -3.56 8.00 31.18 0.25 -3.31 16 29 C -0.15 -5.13 7.29 31.12 0.23 -4.90 16 30 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.38 18.38 7.87 -92.71 -0.73 17.65 16 32 H 0.07 2.34 7.91 -2.39 -0.02 2.32 16 33 H 0.03 1.16 8.13 -2.38 -0.02 1.14 16 34 H 0.41 13.61 8.07 -92.70 -0.75 12.87 16 35 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 36 H 0.14 2.80 6.30 -2.38 -0.02 2.79 16 37 H 0.06 1.29 8.07 -2.39 -0.02 1.27 16 38 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 42 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 44 H 0.14 2.21 6.45 -2.91 -0.02 2.19 16 45 H 0.11 2.42 7.94 -2.39 -0.02 2.40 16 46 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 47 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 48 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.04 1.75 7.85 -2.39 -0.02 1.73 16 50 H 0.09 2.66 8.10 -2.39 -0.02 2.64 16 Total: -1.00 -71.10 402.19 1.40 -69.70 By element: Atomic # 1 Polarization: 44.74 SS G_CDS: -0.52 Total: 44.22 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 4.60 Total: -7.72 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -3.56 Total: -116.20 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.14 Total: -38.90 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -71.10 1.40 -69.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502019213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.852 kcal (2) G-P(sol) polarization free energy of solvation -71.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds