Wall clock time and date at job start Wed Apr 1 2020 03:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48503 * 109.47252 * 270.00546 * 3 2 1 5 5 H 1.48501 * 109.46958 * 30.00020 * 3 2 1 6 6 H 1.48499 * 109.47189 * 149.99953 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00289 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99742 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99541 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46638 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.51280 * 60.10335 * 11 10 9 13 13 C 1.53296 * 109.51214 * 180.25420 * 11 10 9 14 14 N 1.47155 * 108.38776 * 172.22694 * 13 11 10 15 15 C 1.34778 * 120.98146 * 129.44262 * 14 13 11 16 16 O 1.21274 * 120.00005 * 354.76213 * 15 14 13 17 17 C 1.50697 * 119.99460 * 174.76346 * 15 14 13 18 18 C 1.53003 * 115.55073 * 293.77498 * 17 15 14 19 19 C 1.50704 * 109.47135 * 294.43255 * 18 17 15 20 20 C 1.38229 * 120.00246 * 273.79363 * 19 18 17 21 21 C 1.38236 * 120.00222 * 179.81114 * 20 19 18 22 22 C 1.38240 * 119.99658 * 0.41554 * 21 20 19 23 23 C 1.38233 * 120.00272 * 359.81313 * 22 21 20 24 24 C 1.38238 * 119.99795 * 359.97438 * 23 22 21 25 25 C 1.52999 * 117.49654 * 148.11046 * 17 15 14 26 26 C 1.53002 * 117.49972 * 79.45131 * 17 15 14 27 27 C 1.47151 * 118.03353 * 309.46742 * 14 13 11 28 28 C 1.53297 * 108.38505 * 50.53158 * 27 14 13 29 29 O 1.42955 * 109.22364 * 307.69656 * 28 27 14 30 30 H 0.96997 * 120.00076 * 0.02562 * 1 2 3 31 31 H 0.96994 * 119.99937 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47027 * 60.00449 * 10 9 7 33 33 H 1.09000 * 109.47250 * 299.99867 * 10 9 7 34 34 H 1.08999 * 109.68278 * 291.95072 * 13 11 10 35 35 H 1.09004 * 109.68375 * 52.50017 * 13 11 10 36 36 H 1.08997 * 109.47092 * 54.42977 * 18 17 15 37 37 H 1.08998 * 109.47330 * 174.43759 * 18 17 15 38 38 H 1.08004 * 119.99946 * 359.97438 * 20 19 18 39 39 H 1.08001 * 120.00482 * 180.20070 * 21 20 19 40 40 H 1.08003 * 119.99990 * 179.79306 * 22 21 20 41 41 H 1.07999 * 120.00270 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00198 * 179.97438 * 24 23 22 43 43 H 1.09000 * 117.49970 * 359.97438 * 25 17 15 44 44 H 1.08995 * 117.50315 * 145.01459 * 25 17 15 45 45 H 1.08998 * 117.49437 * 214.97546 * 26 17 15 46 46 H 1.08992 * 117.49840 * 359.96756 * 26 17 15 47 47 H 1.09007 * 109.67844 * 290.80950 * 27 14 13 48 48 H 1.09000 * 109.68218 * 170.26256 * 27 14 13 49 49 H 1.09000 * 109.51002 * 187.77397 * 28 27 14 50 50 H 1.08995 * 109.50820 * 67.62333 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.4383 -4.7634 -0.8921 13 6 1.8293 -6.1478 0.0052 14 7 0.8616 -7.2404 0.1934 15 6 0.8509 -8.3072 -0.6303 16 8 1.5813 -8.3334 -1.5981 17 6 -0.0686 -9.4673 -0.3485 18 6 0.2399 -10.2602 0.9232 19 6 1.5739 -10.9458 0.7765 20 6 1.6505 -12.1865 0.1718 21 6 2.8746 -12.8137 0.0337 22 6 4.0210 -12.2040 0.5081 23 6 3.9438 -10.9654 1.1171 24 6 2.7202 -10.3363 1.2512 25 6 -0.6164 -10.2423 -1.5486 26 6 -1.5377 -9.3178 -0.7488 27 6 -0.0943 -7.1335 1.3070 28 6 -0.7660 -5.7573 1.2371 29 8 0.2409 -4.7451 1.1655 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6847 -3.7145 0.8894 33 1 2.6847 -3.7145 -0.8905 34 1 2.3486 -6.2769 -0.9444 35 1 2.5509 -6.1518 0.8222 36 1 0.2720 -9.5816 1.7756 37 1 -0.5371 -11.0077 1.0829 38 1 0.7543 -12.6647 -0.1951 39 1 2.9350 -13.7816 -0.4416 40 1 4.9770 -12.6954 0.4033 41 1 4.8394 -10.4892 1.4881 42 1 2.6598 -9.3688 1.7274 43 1 -0.3119 -9.9127 -2.5420 44 1 -0.7573 -11.3168 -1.4321 45 1 -2.2844 -9.7846 -0.1064 46 1 -1.8392 -8.3802 -1.2156 47 1 0.4336 -7.2366 2.2551 48 1 -0.8488 -7.9153 1.2195 49 1 -1.3742 -5.6034 2.1285 50 1 -1.3982 -5.7054 0.3508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502057967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:09 Heat of formation + Delta-G solvation = -9.474381 kcal Electronic energy + Delta-G solvation = -30620.593116 eV Core-core repulsion = 26614.072886 eV Total energy + Delta-G solvation = -4006.520230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.90724 -39.42924 -38.53222 -36.88811 -35.01195 -34.36068 -32.59916 -32.18928 -31.09761 -30.18641 -28.28996 -27.57206 -25.88236 -23.58733 -23.48513 -22.93023 -22.62280 -22.04994 -21.37927 -20.61340 -18.82650 -17.40023 -17.06992 -16.63444 -16.56898 -16.07055 -15.74447 -15.41431 -15.37812 -15.09765 -14.84866 -14.50200 -14.27921 -14.14874 -13.62806 -13.58045 -13.23360 -13.14934 -13.03792 -12.73729 -12.64171 -12.44129 -12.31996 -12.12311 -11.86136 -11.62819 -11.51998 -11.24390 -10.99709 -10.88215 -10.83436 -10.77594 -10.50408 -10.32539 -10.05422 -9.87239 -9.76744 -9.63041 -9.11571 -8.92029 -8.84776 -8.51758 -6.87138 -5.71081 -2.99608 1.12560 1.20466 2.45640 2.72570 3.32441 3.47116 3.51835 3.53822 3.59757 3.96103 4.15820 4.29721 4.40615 4.53987 4.60056 4.66552 4.74739 4.77683 4.81016 4.90609 4.93859 5.05591 5.12161 5.18557 5.27518 5.27786 5.31147 5.33496 5.38388 5.46797 5.55654 5.58639 5.61634 5.67106 5.71941 5.80217 5.81763 5.82851 5.89698 5.97005 6.24282 6.28880 6.31080 6.34842 6.38071 6.57612 6.71032 6.79342 7.26679 7.47411 7.73634 8.07370 8.47140 9.58872 10.16215 10.52383 11.51780 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018670 B = 0.002388 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.375158 B =11720.168820 C =12487.567133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.075 3.925 12 H 0.062 0.938 13 C 0.086 3.914 14 N -0.609 5.609 15 C 0.556 3.444 16 O -0.532 6.532 17 C -0.151 4.151 18 C -0.040 4.040 19 C -0.079 4.079 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.140 4.140 26 C -0.161 4.161 27 C 0.072 3.928 28 C 0.046 3.954 29 O -0.356 6.356 30 H 0.254 0.746 31 H 0.388 0.612 32 H 0.028 0.972 33 H 0.035 0.965 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -29.102 3.310 29.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.016 3.984 12 H 0.080 0.920 13 C -0.037 4.037 14 N -0.342 5.342 15 C 0.343 3.657 16 O -0.407 6.407 17 C -0.154 4.154 18 C -0.077 4.077 19 C -0.079 4.079 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.177 4.177 26 C -0.198 4.198 27 C -0.052 4.052 28 C -0.032 4.032 29 O -0.274 6.274 30 H 0.064 0.936 31 H 0.222 0.778 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.119 0.881 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.122 0.878 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.186 -28.844 2.937 29.017 hybrid contribution 0.136 0.761 -0.118 0.783 sum -1.050 -28.083 2.819 28.243 Atomic orbital electron populations 1.69674 1.05111 1.25535 1.57748 1.24741 0.95527 0.97661 1.03091 0.86178 0.78638 0.83834 0.77472 1.21762 1.21793 1.20762 1.19228 0.91007 0.84101 1.42627 0.91167 1.42209 1.06056 0.99438 1.89304 1.20623 0.92370 0.84742 0.98733 1.22779 0.92928 0.94228 0.88480 0.92002 1.22342 0.91567 0.85733 1.04074 1.48054 1.35192 1.20432 1.30565 1.19428 0.82560 0.81923 0.81784 1.90697 1.42027 1.79909 1.28108 1.21341 0.96297 0.98855 0.98951 1.20165 0.94722 0.98054 0.94795 1.19706 0.94790 0.94835 0.98615 1.20961 0.97782 0.94955 0.99155 1.21111 0.92725 0.99979 1.00015 1.21141 0.98405 0.95719 0.98849 1.21143 0.97636 0.95404 0.99225 1.21044 0.92360 0.99456 0.99856 1.22999 1.00860 0.98037 0.95821 1.23202 0.90703 1.02513 1.03408 1.22569 0.92965 0.99678 0.89938 1.22913 0.90905 0.86662 1.02737 1.88167 1.46002 1.50489 1.42733 0.93581 0.77831 0.95395 0.94748 0.88151 0.90479 0.89968 0.89725 0.86313 0.86210 0.86254 0.86117 0.86439 0.87816 0.87937 0.87531 0.88140 0.90586 0.88764 0.87801 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -19.14 5.50 -59.91 -0.33 -19.47 16 10 C 0.16 3.41 5.96 -4.04 -0.02 3.39 16 11 C 0.07 1.29 2.87 -26.58 -0.08 1.22 16 12 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 13 C 0.09 1.25 5.94 -3.53 -0.02 1.23 16 14 N -0.61 -7.70 3.02 -172.27 -0.52 -8.22 16 15 C 0.56 7.39 6.48 -10.99 -0.07 7.32 16 16 O -0.53 -9.20 16.18 5.56 0.09 -9.11 16 17 C -0.15 -1.42 0.74 -155.66 -0.12 -1.54 16 18 C -0.04 -0.31 4.90 -27.88 -0.14 -0.45 16 19 C -0.08 -0.76 4.87 -104.62 -0.51 -1.27 16 20 C -0.11 -0.98 9.72 -39.59 -0.38 -1.36 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 22 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.11 -1.14 9.50 -39.58 -0.38 -1.52 16 25 C -0.14 -1.20 9.78 -26.69 -0.26 -1.46 16 26 C -0.16 -1.19 8.96 -26.69 -0.24 -1.43 16 27 C 0.07 0.72 5.39 -3.53 -0.02 0.70 16 28 C 0.05 0.56 6.98 37.31 0.26 0.83 16 29 O -0.36 -6.21 10.13 -35.23 -0.36 -6.57 16 30 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.39 10.87 7.54 -40.82 -0.31 10.56 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.57 7.06 -51.93 -0.37 1.20 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.59 6.40 -51.93 -0.33 0.26 16 37 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 38 H 0.12 0.80 7.96 -52.48 -0.42 0.39 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.10 1.08 8.01 -51.93 -0.42 0.66 16 44 H 0.10 0.67 8.04 -51.93 -0.42 0.25 16 45 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 0.71 5.08 -51.93 -0.26 0.44 16 49 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 406.28 15.07 6.12 6.12 Total: -1.00 -35.35 406.28 -10.69 -46.03 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.98 Total: 7.93 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -3.41 Total: -6.39 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.12 Total: -55.82 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.27 Total: -15.68 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.35 -10.69 -46.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502057967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.560 kcal (2) G-P(sol) polarization free energy of solvation -35.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds