Wall clock time and date at job start Wed Apr 1 2020 03:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48503 * 109.47252 * 270.00546 * 3 2 1 5 5 H 1.48501 * 109.46958 * 30.00020 * 3 2 1 6 6 H 1.48499 * 109.47189 * 149.99953 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00289 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99742 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99541 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46638 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.51280 * 60.10335 * 11 10 9 13 13 C 1.53296 * 109.51214 * 180.25420 * 11 10 9 14 14 N 1.47155 * 108.38776 * 172.22694 * 13 11 10 15 15 C 1.34778 * 120.98146 * 129.44262 * 14 13 11 16 16 O 1.21274 * 120.00005 * 354.76213 * 15 14 13 17 17 C 1.50697 * 119.99460 * 174.76346 * 15 14 13 18 18 C 1.53003 * 115.55073 * 293.77498 * 17 15 14 19 19 C 1.50704 * 109.47135 * 294.43255 * 18 17 15 20 20 C 1.38229 * 120.00246 * 273.79363 * 19 18 17 21 21 C 1.38236 * 120.00222 * 179.81114 * 20 19 18 22 22 C 1.38240 * 119.99658 * 0.41554 * 21 20 19 23 23 C 1.38233 * 120.00272 * 359.81313 * 22 21 20 24 24 C 1.38238 * 119.99795 * 359.97438 * 23 22 21 25 25 C 1.52999 * 117.49654 * 148.11046 * 17 15 14 26 26 C 1.53002 * 117.49972 * 79.45131 * 17 15 14 27 27 C 1.47151 * 118.03353 * 309.46742 * 14 13 11 28 28 C 1.53297 * 108.38505 * 50.53158 * 27 14 13 29 29 O 1.42955 * 109.22364 * 307.69656 * 28 27 14 30 30 H 0.96997 * 120.00076 * 0.02562 * 1 2 3 31 31 H 0.96994 * 119.99937 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47027 * 60.00449 * 10 9 7 33 33 H 1.09000 * 109.47250 * 299.99867 * 10 9 7 34 34 H 1.08999 * 109.68278 * 291.95072 * 13 11 10 35 35 H 1.09004 * 109.68375 * 52.50017 * 13 11 10 36 36 H 1.08997 * 109.47092 * 54.42977 * 18 17 15 37 37 H 1.08998 * 109.47330 * 174.43759 * 18 17 15 38 38 H 1.08004 * 119.99946 * 359.97438 * 20 19 18 39 39 H 1.08001 * 120.00482 * 180.20070 * 21 20 19 40 40 H 1.08003 * 119.99990 * 179.79306 * 22 21 20 41 41 H 1.07999 * 120.00270 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00198 * 179.97438 * 24 23 22 43 43 H 1.09000 * 117.49970 * 359.97438 * 25 17 15 44 44 H 1.08995 * 117.50315 * 145.01459 * 25 17 15 45 45 H 1.08998 * 117.49437 * 214.97546 * 26 17 15 46 46 H 1.08992 * 117.49840 * 359.96756 * 26 17 15 47 47 H 1.09007 * 109.67844 * 290.80950 * 27 14 13 48 48 H 1.09000 * 109.68218 * 170.26256 * 27 14 13 49 49 H 1.09000 * 109.51002 * 187.77397 * 28 27 14 50 50 H 1.08995 * 109.50820 * 67.62333 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.4383 -4.7634 -0.8921 13 6 1.8293 -6.1478 0.0052 14 7 0.8616 -7.2404 0.1934 15 6 0.8509 -8.3072 -0.6303 16 8 1.5813 -8.3334 -1.5981 17 6 -0.0686 -9.4673 -0.3485 18 6 0.2399 -10.2602 0.9232 19 6 1.5739 -10.9458 0.7765 20 6 1.6505 -12.1865 0.1718 21 6 2.8746 -12.8137 0.0337 22 6 4.0210 -12.2040 0.5081 23 6 3.9438 -10.9654 1.1171 24 6 2.7202 -10.3363 1.2512 25 6 -0.6164 -10.2423 -1.5486 26 6 -1.5377 -9.3178 -0.7488 27 6 -0.0943 -7.1335 1.3070 28 6 -0.7660 -5.7573 1.2371 29 8 0.2409 -4.7451 1.1655 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6847 -3.7145 0.8894 33 1 2.6847 -3.7145 -0.8905 34 1 2.3486 -6.2769 -0.9444 35 1 2.5509 -6.1518 0.8222 36 1 0.2720 -9.5816 1.7756 37 1 -0.5371 -11.0077 1.0829 38 1 0.7543 -12.6647 -0.1951 39 1 2.9350 -13.7816 -0.4416 40 1 4.9770 -12.6954 0.4033 41 1 4.8394 -10.4892 1.4881 42 1 2.6598 -9.3688 1.7274 43 1 -0.3119 -9.9127 -2.5420 44 1 -0.7573 -11.3168 -1.4321 45 1 -2.2844 -9.7846 -0.1064 46 1 -1.8392 -8.3802 -1.2156 47 1 0.4336 -7.2366 2.2551 48 1 -0.8488 -7.9153 1.2195 49 1 -1.3742 -5.6034 2.1285 50 1 -1.3982 -5.7054 0.3508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502057967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:08 Heat of formation + Delta-G solvation = -31.412320 kcal Electronic energy + Delta-G solvation = -30621.544417 eV Core-core repulsion = 26614.072886 eV Total energy + Delta-G solvation = -4007.471531 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.85002 -40.27475 -39.55936 -37.73692 -36.67122 -35.73685 -33.92940 -33.22303 -31.91516 -31.74586 -29.42243 -28.39083 -27.36289 -25.15433 -24.56004 -23.61836 -23.31893 -23.23178 -22.42215 -21.73756 -19.76881 -19.22950 -18.14836 -17.79273 -17.41771 -17.15155 -16.80234 -16.64326 -16.19876 -16.07426 -15.93446 -15.86673 -15.43486 -15.21186 -15.03503 -14.59884 -14.28752 -14.26607 -14.13502 -13.98895 -13.82005 -13.45168 -13.16408 -13.12759 -12.96279 -12.80687 -12.64078 -12.44423 -12.28257 -12.22057 -12.06516 -11.88991 -11.88102 -11.62895 -11.50816 -11.20680 -11.01196 -10.96463 -10.70674 -9.79611 -9.65204 -9.57575 -9.02546 -7.95103 -5.24864 0.45715 0.52344 1.46624 1.47816 1.49370 1.57831 1.73759 2.55498 2.65287 2.73926 2.92506 3.34465 3.38506 3.54718 3.63986 3.78412 3.88477 3.90765 3.94381 4.02011 4.06031 4.15162 4.15290 4.20808 4.29302 4.33950 4.41198 4.45545 4.54336 4.62639 4.64967 4.71344 4.73945 4.77265 4.84048 4.86812 4.89047 4.93941 4.97972 5.05710 5.17548 5.19559 5.20739 5.28763 5.46919 5.58433 5.64126 5.71125 6.15263 6.21418 6.26097 6.29277 7.05434 7.32416 8.05722 8.31293 9.28644 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018670 B = 0.002388 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.375158 B =11720.168820 C =12487.567133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.077 0.923 9 N -0.739 5.739 10 C 0.161 3.839 11 C 0.091 3.909 12 H 0.045 0.955 13 C 0.096 3.904 14 N -0.608 5.608 15 C 0.551 3.449 16 O -0.582 6.582 17 C -0.159 4.159 18 C -0.035 4.035 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.136 4.136 24 C -0.132 4.132 25 C -0.145 4.145 26 C -0.140 4.140 27 C 0.077 3.923 28 C 0.038 3.962 29 O -0.386 6.386 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.129 0.871 45 H 0.144 0.856 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.128 0.872 49 H 0.129 0.871 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 -31.215 4.363 31.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.382 5.382 10 C 0.034 3.966 11 C 0.032 3.968 12 H 0.063 0.937 13 C -0.028 4.028 14 N -0.341 5.341 15 C 0.340 3.660 16 O -0.461 6.461 17 C -0.162 4.162 18 C -0.072 4.072 19 C -0.090 4.090 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.150 4.150 25 C -0.182 4.182 26 C -0.177 4.177 27 C -0.045 4.045 28 C -0.039 4.039 29 O -0.305 6.305 30 H 0.060 0.940 31 H 0.208 0.792 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.095 0.905 44 H 0.147 0.853 45 H 0.162 0.838 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.145 0.855 49 H 0.147 0.853 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.124 -30.992 4.013 31.323 hybrid contribution 0.443 1.353 -0.468 1.498 sum -1.681 -29.640 3.545 29.898 Atomic orbital electron populations 1.69839 1.06701 1.26113 1.59312 1.25626 0.96472 1.01247 1.03523 0.85082 0.77682 0.79147 0.77474 1.21316 1.21984 1.19343 1.19659 0.91554 0.85236 1.41529 0.90500 1.42387 1.05700 1.00760 1.89341 1.20755 0.93084 0.84083 0.98723 1.22403 0.92249 0.94065 0.88119 0.93719 1.22041 0.91809 0.85287 1.03684 1.48141 1.35071 1.19654 1.31202 1.20210 0.82362 0.82659 0.80721 1.90669 1.44253 1.80965 1.30239 1.21295 0.96804 0.97765 1.00341 1.20243 0.94583 0.98562 0.93780 1.19988 0.95342 0.95275 0.98365 1.21311 0.98777 0.94773 0.98629 1.21477 0.92650 1.00878 0.99637 1.21421 0.99583 0.95586 0.98755 1.21362 0.97935 0.96164 0.99953 1.21183 0.93249 0.99606 1.00930 1.23069 1.01194 0.99689 0.94291 1.23344 0.89927 1.01814 1.02638 1.22730 0.93135 0.99132 0.89486 1.23242 0.90123 0.86749 1.03832 1.88104 1.47173 1.52915 1.42260 0.93956 0.79246 0.95139 0.94297 0.89620 0.89615 0.89303 0.86480 0.83888 0.84083 0.84736 0.85714 0.87084 0.90549 0.85257 0.83802 0.89377 0.89134 0.85460 0.85313 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -39.95 5.50 -343.44 -1.89 -41.84 16 10 C 0.16 6.87 5.96 86.38 0.51 7.38 16 11 C 0.09 3.22 2.87 30.69 0.09 3.31 16 12 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 13 C 0.10 2.85 5.94 86.35 0.51 3.37 16 14 N -0.61 -15.00 3.02 -817.34 -2.47 -17.47 16 15 C 0.55 14.40 6.48 87.66 0.57 14.97 16 16 O -0.58 -20.78 16.18 -3.01 -0.05 -20.83 16 17 C -0.16 -2.61 0.74 -52.93 -0.04 -2.65 16 18 C -0.03 -0.42 4.90 29.85 0.15 -0.27 16 19 C -0.09 -1.55 4.87 -19.86 -0.10 -1.64 16 20 C -0.12 -1.78 9.72 22.27 0.22 -1.57 16 21 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 22 C -0.14 -2.37 10.05 22.27 0.22 -2.14 16 23 C -0.14 -2.72 10.05 22.27 0.22 -2.49 16 24 C -0.13 -2.71 9.50 22.27 0.21 -2.50 16 25 C -0.15 -2.15 9.78 30.62 0.30 -1.85 16 26 C -0.14 -1.59 8.96 30.62 0.27 -1.32 16 27 C 0.08 1.37 5.39 86.35 0.47 1.83 16 28 C 0.04 0.87 6.98 72.08 0.50 1.37 16 29 O -0.39 -13.48 10.13 -148.98 -1.51 -14.99 16 30 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.38 21.77 7.54 -92.71 -0.70 21.07 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 2.81 7.06 -2.39 -0.02 2.80 16 35 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.09 0.95 6.40 -2.39 -0.02 0.93 16 37 H 0.12 0.69 8.06 -2.39 -0.02 0.67 16 38 H 0.14 1.38 7.96 -2.91 -0.02 1.36 16 39 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.12 2.19 8.06 -2.91 -0.02 2.16 16 42 H 0.11 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.08 1.57 8.01 -2.39 -0.02 1.55 16 44 H 0.13 1.19 8.04 -2.39 -0.02 1.17 16 45 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.13 1.42 5.08 -2.39 -0.01 1.41 16 49 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -79.41 406.28 2.27 -77.14 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.23 Total: 33.19 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 5.64 Total: -3.67 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -4.07 Total: -120.14 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -1.56 Total: -35.82 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -79.41 2.27 -77.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502057967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.724 kcal (2) G-P(sol) polarization free energy of solvation -79.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds