Wall clock time and date at job start Wed Apr 1 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47272 * 240.00371 * 3 2 1 5 5 H 1.48502 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47254 * 120.00021 * 3 2 1 7 7 C 1.38812 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00272 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00210 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46977 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.51118 * 304.99599 * 11 10 9 13 13 C 1.53295 * 109.55336 * 184.87377 * 11 10 9 14 14 N 1.47158 * 108.38565 * 187.74743 * 13 11 10 15 15 C 1.34777 * 120.97949 * 230.51135 * 14 13 11 16 16 O 1.21285 * 120.00005 * 354.23954 * 15 14 13 17 17 C 1.50702 * 120.00040 * 174.24067 * 15 14 13 18 18 C 1.53000 * 115.54869 * 292.77934 * 17 15 14 19 19 C 1.50702 * 109.47023 * 294.59591 * 18 17 15 20 20 C 1.38235 * 119.99318 * 275.63878 * 19 18 17 21 21 C 1.38238 * 119.99439 * 179.79112 * 20 19 18 22 22 C 1.38235 * 120.00164 * 0.46027 * 21 20 19 23 23 C 1.38231 * 119.99861 * 359.77323 * 22 21 20 24 24 C 1.38236 * 120.00131 * 95.91390 * 19 18 17 25 25 C 1.52997 * 117.50145 * 147.10862 * 17 15 14 26 26 C 1.52995 * 117.49732 * 78.44580 * 17 15 14 27 27 C 1.47146 * 118.03598 * 50.52988 * 14 13 11 28 28 C 1.53292 * 108.38676 * 309.46766 * 27 14 13 29 29 O 1.42960 * 109.51850 * 65.09942 * 11 10 9 30 30 H 0.97010 * 119.99963 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99547 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47548 * 59.99878 * 10 9 7 33 33 H 1.08999 * 109.47017 * 299.99495 * 10 9 7 34 34 H 1.09003 * 109.67996 * 307.46721 * 13 11 10 35 35 H 1.08997 * 109.68539 * 68.02251 * 13 11 10 36 36 H 1.09007 * 109.47228 * 54.59289 * 18 17 15 37 37 H 1.08997 * 109.47329 * 174.59044 * 18 17 15 38 38 H 1.08002 * 120.00611 * 359.97438 * 20 19 18 39 39 H 1.08005 * 119.99814 * 180.25037 * 21 20 19 40 40 H 1.07997 * 120.00038 * 179.79017 * 22 21 20 41 41 H 1.08002 * 120.00271 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.99937 * 359.97438 * 24 19 18 43 43 H 1.08997 * 117.49837 * 359.97438 * 25 17 15 44 44 H 1.08990 * 117.49758 * 145.02291 * 25 17 15 45 45 H 1.09006 * 117.50053 * 214.98280 * 26 17 15 46 46 H 1.08998 * 117.50229 * 359.97438 * 26 17 15 47 47 H 1.09004 * 109.68179 * 189.74086 * 27 14 13 48 48 H 1.09009 * 109.70917 * 69.21152 * 27 14 13 49 49 H 1.09000 * 109.50942 * 292.37895 * 28 27 14 50 50 H 1.09002 * 109.55545 * 172.24894 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8196 -0.0012 12 1 0.3790 -4.7136 0.8403 13 6 1.8243 -6.1449 0.1215 14 7 0.8687 -7.2478 -0.0688 15 6 0.7995 -8.2656 0.8120 16 8 1.5999 -8.3368 1.7204 17 6 -0.2723 -9.3151 0.6680 18 6 -1.7043 -8.8331 0.9090 19 6 -1.8589 -8.4178 2.3494 20 6 -2.1428 -9.3653 3.3151 21 6 -2.2803 -8.9850 4.6370 22 6 -2.1432 -7.6560 4.9917 23 6 -1.8641 -6.7079 4.0253 24 6 -1.7223 -7.0887 2.7040 25 6 0.0742 -10.7423 1.0967 26 6 -0.0608 -10.4005 -0.3893 27 6 -0.0086 -7.2067 -1.2494 28 6 -0.6799 -5.8296 -1.3053 29 8 0.3226 -4.8137 -1.2237 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6847 -3.7145 0.8894 33 1 2.6846 -3.7145 -0.8906 34 1 2.5999 -6.1952 -0.6427 35 1 2.2772 -6.2182 1.1103 36 1 -1.9153 -7.9824 0.2609 37 1 -2.4018 -9.6408 0.6868 38 1 -2.2543 -10.4030 3.0374 39 1 -2.4981 -9.7258 5.3922 40 1 -2.2540 -7.3584 6.0240 41 1 -1.7566 -5.6696 4.3024 42 1 -1.5044 -6.3480 1.9489 43 1 1.0777 -10.9223 1.4824 44 1 -0.7180 -11.3380 1.5499 45 1 -0.9418 -10.7715 -0.9130 46 1 0.8534 -10.3552 -0.9811 47 1 -0.7695 -7.9830 -1.1685 48 1 0.5820 -7.3642 -2.1520 49 1 -1.3709 -5.7273 -0.4686 50 1 -1.2259 -5.7277 -2.2432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502057968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:13 Heat of formation + Delta-G solvation = -8.581498 kcal Electronic energy + Delta-G solvation = -31099.284551 eV Core-core repulsion = 27092.803039 eV Total energy + Delta-G solvation = -4006.481512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.91287 -39.32512 -38.53650 -36.88137 -35.01634 -34.37605 -32.53456 -32.18848 -30.96835 -30.20578 -28.24590 -27.55896 -25.87856 -23.60236 -23.48452 -22.90796 -22.50889 -21.96613 -21.31384 -20.69482 -18.80128 -17.35787 -17.06318 -16.58069 -16.53793 -16.16917 -15.77164 -15.36338 -15.26322 -14.98520 -14.75975 -14.59363 -14.42240 -14.04865 -13.53117 -13.49326 -13.16816 -13.15415 -13.00753 -12.71752 -12.63299 -12.39574 -12.32403 -12.04666 -11.87537 -11.59092 -11.46259 -11.13668 -11.01100 -10.88172 -10.79318 -10.77153 -10.51652 -10.33375 -10.07922 -9.90503 -9.75881 -9.62501 -8.98681 -8.85183 -8.80921 -8.52118 -6.88303 -5.71744 -3.00382 1.24281 1.33348 2.45390 2.74372 3.33017 3.47479 3.51338 3.52601 3.70015 3.93865 4.16629 4.31731 4.42672 4.56906 4.59452 4.73627 4.76059 4.84965 4.89149 4.93862 5.02987 5.05564 5.12326 5.20448 5.25498 5.31918 5.34844 5.38113 5.43234 5.54316 5.57685 5.59628 5.61126 5.65355 5.72427 5.79179 5.88954 5.91770 5.94995 5.98052 6.27410 6.34919 6.36704 6.45309 6.49825 6.56861 6.70171 6.92044 7.26896 7.45552 7.72703 8.07656 8.46292 9.58013 10.14843 10.50853 11.50968 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012933 B = 0.002976 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.515442 B = 9407.015272 C =10635.358579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.075 3.925 12 H 0.062 0.938 13 C 0.086 3.914 14 N -0.609 5.609 15 C 0.556 3.444 16 O -0.531 6.531 17 C -0.150 4.150 18 C -0.041 4.041 19 C -0.082 4.082 20 C -0.111 4.111 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.113 4.113 24 C -0.108 4.108 25 C -0.140 4.140 26 C -0.161 4.161 27 C 0.070 3.930 28 C 0.044 3.956 29 O -0.357 6.357 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.036 0.964 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.077 0.923 49 H 0.052 0.948 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 -25.332 1.438 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.017 3.983 12 H 0.080 0.920 13 C -0.037 4.037 14 N -0.342 5.342 15 C 0.343 3.657 16 O -0.407 6.407 17 C -0.153 4.153 18 C -0.078 4.078 19 C -0.082 4.082 20 C -0.129 4.129 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.177 4.177 26 C -0.198 4.198 27 C -0.053 4.053 28 C -0.034 4.034 29 O -0.275 6.275 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.117 0.883 47 H 0.113 0.887 48 H 0.096 0.904 49 H 0.070 0.930 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.120 -25.103 1.784 25.899 hybrid contribution 0.085 0.827 0.146 0.844 sum -6.036 -24.276 1.929 25.089 Atomic orbital electron populations 1.69662 1.05103 1.25664 1.57629 1.24730 0.95519 0.97635 1.03010 0.86260 0.78505 0.83525 0.77842 1.21268 1.21708 1.21280 1.19179 0.90996 0.84097 1.42840 0.91208 1.42208 1.05975 0.99468 1.89377 1.20613 0.92421 0.84652 0.98809 1.22786 0.94151 0.94211 0.87199 0.91992 1.22341 0.91793 0.85410 1.04135 1.48052 1.38627 1.22858 1.24704 1.19433 0.84033 0.81195 0.81018 1.90698 1.41651 1.75354 1.33020 1.21345 0.95298 0.90707 1.07996 1.20203 0.92130 1.01978 0.93530 1.19667 0.99940 0.93583 0.94987 1.20921 1.00412 0.98716 0.92891 1.21095 1.00581 0.96144 0.96105 1.21152 1.00142 0.93326 0.99377 1.21204 0.98954 0.99887 0.93059 1.21067 0.99438 0.95443 0.96654 1.22994 1.03857 0.94288 0.96600 1.23185 1.03981 1.00248 0.92403 1.22582 0.94679 0.99646 0.88419 1.22938 0.90922 0.86676 1.02833 1.88165 1.49476 1.52007 1.37813 0.93525 0.77928 0.94694 0.95274 0.90489 0.88212 0.89961 0.89683 0.86422 0.86273 0.86209 0.85839 0.86479 0.87887 0.87910 0.87593 0.88280 0.88650 0.90431 0.92983 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.99 5.55 -59.92 -0.33 -19.32 16 10 C 0.16 3.39 5.93 -4.04 -0.02 3.36 16 11 C 0.08 1.29 2.81 -26.58 -0.07 1.22 16 12 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 13 C 0.09 1.26 5.91 -3.53 -0.02 1.24 16 14 N -0.61 -7.76 3.02 -172.27 -0.52 -8.28 16 15 C 0.56 7.46 6.54 -10.98 -0.07 7.39 16 16 O -0.53 -9.24 16.24 5.55 0.09 -9.15 16 17 C -0.15 -1.44 0.73 -155.66 -0.11 -1.55 16 18 C -0.04 -0.35 4.83 -27.88 -0.13 -0.49 16 19 C -0.08 -0.89 4.85 -104.62 -0.51 -1.40 16 20 C -0.11 -1.11 9.72 -39.58 -0.38 -1.50 16 21 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 22 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 23 C -0.11 -1.39 10.05 -39.58 -0.40 -1.79 16 24 C -0.11 -1.36 9.58 -39.58 -0.38 -1.74 16 25 C -0.14 -1.18 9.78 -26.69 -0.26 -1.44 16 26 C -0.16 -1.12 9.34 -26.69 -0.25 -1.37 16 27 C 0.07 0.70 5.95 -3.54 -0.02 0.68 16 28 C 0.04 0.54 6.98 37.31 0.26 0.80 16 29 O -0.36 -6.12 10.33 -35.23 -0.36 -6.49 16 30 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.39 10.72 7.67 -40.82 -0.31 10.41 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.57 7.13 -51.93 -0.37 1.20 16 36 H 0.08 0.67 6.19 -51.92 -0.32 0.35 16 37 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 38 H 0.12 0.90 7.81 -52.49 -0.41 0.49 16 39 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.10 1.03 8.03 -51.93 -0.42 0.61 16 44 H 0.10 0.67 7.89 -51.93 -0.41 0.26 16 45 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 0.72 4.51 -51.93 -0.23 0.48 16 48 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 406.62 15.07 6.13 6.13 Total: -1.00 -35.02 406.62 -10.66 -45.68 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.94 Total: 9.05 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -3.42 Total: -7.43 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.13 Total: -55.51 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.27 Total: -15.63 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.02 -10.66 -45.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502057968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.096 kcal (2) G-P(sol) polarization free energy of solvation -35.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds