Wall clock time and date at job start Wed Apr 1 2020 03:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47272 * 240.00371 * 3 2 1 5 5 H 1.48502 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47254 * 120.00021 * 3 2 1 7 7 C 1.38812 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00272 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00210 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46977 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.51118 * 304.99599 * 11 10 9 13 13 C 1.53295 * 109.55336 * 184.87377 * 11 10 9 14 14 N 1.47158 * 108.38565 * 187.74743 * 13 11 10 15 15 C 1.34777 * 120.97949 * 230.51135 * 14 13 11 16 16 O 1.21285 * 120.00005 * 354.23954 * 15 14 13 17 17 C 1.50702 * 120.00040 * 174.24067 * 15 14 13 18 18 C 1.53000 * 115.54869 * 292.77934 * 17 15 14 19 19 C 1.50702 * 109.47023 * 294.59591 * 18 17 15 20 20 C 1.38235 * 119.99318 * 275.63878 * 19 18 17 21 21 C 1.38238 * 119.99439 * 179.79112 * 20 19 18 22 22 C 1.38235 * 120.00164 * 0.46027 * 21 20 19 23 23 C 1.38231 * 119.99861 * 359.77323 * 22 21 20 24 24 C 1.38236 * 120.00131 * 95.91390 * 19 18 17 25 25 C 1.52997 * 117.50145 * 147.10862 * 17 15 14 26 26 C 1.52995 * 117.49732 * 78.44580 * 17 15 14 27 27 C 1.47146 * 118.03598 * 50.52988 * 14 13 11 28 28 C 1.53292 * 108.38676 * 309.46766 * 27 14 13 29 29 O 1.42960 * 109.51850 * 65.09942 * 11 10 9 30 30 H 0.97010 * 119.99963 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99547 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47548 * 59.99878 * 10 9 7 33 33 H 1.08999 * 109.47017 * 299.99495 * 10 9 7 34 34 H 1.09003 * 109.67996 * 307.46721 * 13 11 10 35 35 H 1.08997 * 109.68539 * 68.02251 * 13 11 10 36 36 H 1.09007 * 109.47228 * 54.59289 * 18 17 15 37 37 H 1.08997 * 109.47329 * 174.59044 * 18 17 15 38 38 H 1.08002 * 120.00611 * 359.97438 * 20 19 18 39 39 H 1.08005 * 119.99814 * 180.25037 * 21 20 19 40 40 H 1.07997 * 120.00038 * 179.79017 * 22 21 20 41 41 H 1.08002 * 120.00271 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.99937 * 359.97438 * 24 19 18 43 43 H 1.08997 * 117.49837 * 359.97438 * 25 17 15 44 44 H 1.08990 * 117.49758 * 145.02291 * 25 17 15 45 45 H 1.09006 * 117.50053 * 214.98280 * 26 17 15 46 46 H 1.08998 * 117.50229 * 359.97438 * 26 17 15 47 47 H 1.09004 * 109.68179 * 189.74086 * 27 14 13 48 48 H 1.09009 * 109.70917 * 69.21152 * 27 14 13 49 49 H 1.09000 * 109.50942 * 292.37895 * 28 27 14 50 50 H 1.09002 * 109.55545 * 172.24894 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8196 -0.0012 12 1 0.3790 -4.7136 0.8403 13 6 1.8243 -6.1449 0.1215 14 7 0.8687 -7.2478 -0.0688 15 6 0.7995 -8.2656 0.8120 16 8 1.5999 -8.3368 1.7204 17 6 -0.2723 -9.3151 0.6680 18 6 -1.7043 -8.8331 0.9090 19 6 -1.8589 -8.4178 2.3494 20 6 -2.1428 -9.3653 3.3151 21 6 -2.2803 -8.9850 4.6370 22 6 -2.1432 -7.6560 4.9917 23 6 -1.8641 -6.7079 4.0253 24 6 -1.7223 -7.0887 2.7040 25 6 0.0742 -10.7423 1.0967 26 6 -0.0608 -10.4005 -0.3893 27 6 -0.0086 -7.2067 -1.2494 28 6 -0.6799 -5.8296 -1.3053 29 8 0.3226 -4.8137 -1.2237 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6847 -3.7145 0.8894 33 1 2.6846 -3.7145 -0.8906 34 1 2.5999 -6.1952 -0.6427 35 1 2.2772 -6.2182 1.1103 36 1 -1.9153 -7.9824 0.2609 37 1 -2.4018 -9.6408 0.6868 38 1 -2.2543 -10.4030 3.0374 39 1 -2.4981 -9.7258 5.3922 40 1 -2.2540 -7.3584 6.0240 41 1 -1.7566 -5.6696 4.3024 42 1 -1.5044 -6.3480 1.9489 43 1 1.0777 -10.9223 1.4824 44 1 -0.7180 -11.3380 1.5499 45 1 -0.9418 -10.7715 -0.9130 46 1 0.8534 -10.3552 -0.9811 47 1 -0.7695 -7.9830 -1.1685 48 1 0.5820 -7.3642 -2.1520 49 1 -1.3709 -5.7273 -0.4686 50 1 -1.2259 -5.7277 -2.2432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502057968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:11 Heat of formation + Delta-G solvation = -30.402233 kcal Electronic energy + Delta-G solvation = -31100.230769 eV Core-core repulsion = 27092.803039 eV Total energy + Delta-G solvation = -4007.427730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.87027 -40.26562 -39.60215 -37.73539 -36.68482 -35.74127 -33.94552 -33.25303 -31.93635 -31.77556 -29.40711 -28.42642 -27.38702 -25.16403 -24.57234 -23.63961 -23.31447 -23.22071 -22.32668 -21.88860 -19.75475 -19.23489 -18.15870 -17.79443 -17.41160 -17.23448 -16.83006 -16.71060 -16.16573 -16.09740 -15.87501 -15.84732 -15.54978 -15.23560 -15.02958 -14.57874 -14.32233 -14.29429 -14.19399 -13.91845 -13.85746 -13.46810 -13.24010 -13.17436 -12.89342 -12.75749 -12.63441 -12.40253 -12.30804 -12.23996 -12.10401 -11.93119 -11.88463 -11.65113 -11.49933 -11.24262 -11.00189 -10.96452 -10.68557 -9.83526 -9.66502 -9.60119 -9.03532 -7.95455 -5.25454 0.42423 0.48417 1.45696 1.47098 1.50331 1.56294 1.76032 2.55103 2.65984 2.71903 2.89825 3.35268 3.38131 3.52619 3.65130 3.78771 3.85493 3.90413 3.92788 3.98987 4.02430 4.09298 4.16263 4.18187 4.27451 4.31665 4.39581 4.45555 4.51292 4.60435 4.62317 4.69718 4.74943 4.77025 4.79194 4.87054 4.88996 4.94202 5.00578 5.04352 5.13841 5.17497 5.23633 5.28505 5.46282 5.55372 5.61371 5.67226 6.12082 6.19962 6.24978 6.29037 7.05440 7.31675 8.04400 8.30074 9.27909 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012933 B = 0.002976 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.515442 B = 9407.015272 C =10635.358579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.977 3.023 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.077 0.923 9 N -0.739 5.739 10 C 0.161 3.839 11 C 0.093 3.907 12 H 0.043 0.957 13 C 0.095 3.905 14 N -0.609 5.609 15 C 0.550 3.450 16 O -0.582 6.582 17 C -0.165 4.165 18 C -0.037 4.037 19 C -0.087 4.087 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.134 4.134 25 C -0.144 4.144 26 C -0.133 4.133 27 C 0.075 3.925 28 C 0.036 3.964 29 O -0.385 6.385 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.039 0.961 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.143 0.857 46 H 0.095 0.905 47 H 0.129 0.871 48 H 0.092 0.908 49 H 0.048 0.952 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 -28.227 0.214 29.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.095 0.905 9 N -0.382 5.382 10 C 0.033 3.967 11 C 0.034 3.966 12 H 0.061 0.939 13 C -0.028 4.028 14 N -0.341 5.341 15 C 0.340 3.660 16 O -0.461 6.461 17 C -0.168 4.168 18 C -0.074 4.074 19 C -0.087 4.087 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.152 4.152 23 C -0.158 4.158 24 C -0.152 4.152 25 C -0.181 4.181 26 C -0.170 4.170 27 C -0.046 4.046 28 C -0.041 4.041 29 O -0.304 6.304 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.168 0.832 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.146 0.854 45 H 0.161 0.839 46 H 0.114 0.886 47 H 0.147 0.853 48 H 0.110 0.890 49 H 0.067 0.933 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.888 -28.032 0.533 28.871 hybrid contribution 0.334 1.662 0.542 1.780 sum -6.554 -26.370 1.075 27.194 Atomic orbital electron populations 1.69832 1.06686 1.26190 1.59141 1.25613 0.96453 1.01205 1.03385 0.85162 0.77189 0.78836 0.78252 1.20244 1.21944 1.20325 1.19622 0.91568 0.85247 1.41841 0.90513 1.42385 1.05617 1.00773 1.89413 1.20739 0.93124 0.84051 0.98740 1.22378 0.93270 0.94014 0.86953 0.93852 1.22036 0.92123 0.85140 1.03533 1.48148 1.38396 1.22013 1.25576 1.20231 0.84216 0.81636 0.79891 1.90668 1.43866 1.76639 1.34915 1.21270 0.94221 0.90045 1.11229 1.20287 0.92031 1.03262 0.91811 1.19987 0.99102 0.92767 0.96887 1.21333 0.99188 1.00016 0.92551 1.21501 0.99472 0.96109 0.97162 1.21397 1.00170 0.93825 0.99792 1.21326 1.00519 1.00116 0.93859 1.21112 1.01199 0.96518 0.96375 1.23085 1.03505 0.93338 0.98214 1.23356 1.05266 0.96793 0.91552 1.22744 0.95067 0.99139 0.87692 1.23263 0.90067 0.86688 1.04058 1.88098 1.50702 1.54391 1.37230 0.93948 0.79333 0.94295 0.95083 0.89595 0.89831 0.89896 0.86009 0.83241 0.83561 0.84766 0.86820 0.88263 0.90243 0.85366 0.83944 0.88642 0.85339 0.88989 0.93337 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.02 13.06 21.65 0.28 -60.74 16 2 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 3 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -40.05 5.55 -343.47 -1.91 -41.96 16 10 C 0.16 6.91 5.93 86.38 0.51 7.42 16 11 C 0.09 3.32 2.81 30.69 0.09 3.41 16 12 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 13 C 0.10 2.90 5.91 86.35 0.51 3.41 16 14 N -0.61 -15.25 3.02 -817.33 -2.47 -17.71 16 15 C 0.55 14.53 6.54 87.66 0.57 15.11 16 16 O -0.58 -20.84 16.24 -3.04 -0.05 -20.89 16 17 C -0.16 -2.71 0.73 -52.93 -0.04 -2.75 16 18 C -0.04 -0.52 4.83 29.85 0.14 -0.37 16 19 C -0.09 -1.79 4.85 -19.87 -0.10 -1.88 16 20 C -0.11 -1.97 9.72 22.27 0.22 -1.75 16 21 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 22 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 23 C -0.14 -3.71 10.05 22.27 0.22 -3.49 16 24 C -0.13 -3.54 9.58 22.27 0.21 -3.32 16 25 C -0.14 -1.97 9.78 30.62 0.30 -1.67 16 26 C -0.13 -1.27 9.34 30.62 0.29 -0.98 16 27 C 0.08 1.35 5.95 86.35 0.51 1.86 16 28 C 0.04 0.84 6.98 72.08 0.50 1.34 16 29 O -0.39 -13.43 10.33 -148.98 -1.54 -14.97 16 30 H 0.25 15.31 8.31 -92.70 -0.77 14.54 16 31 H 0.37 21.75 7.67 -92.71 -0.71 21.04 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.08 2.80 7.13 -2.39 -0.02 2.79 16 36 H 0.08 1.13 6.19 -2.38 -0.01 1.12 16 37 H 0.12 0.85 8.07 -2.39 -0.02 0.83 16 38 H 0.15 1.59 7.81 -2.91 -0.02 1.56 16 39 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 41 H 0.11 3.02 8.06 -2.91 -0.02 3.00 16 42 H 0.10 2.84 8.06 -2.91 -0.02 2.82 16 43 H 0.08 1.49 8.03 -2.39 -0.02 1.47 16 44 H 0.13 1.07 7.89 -2.39 -0.02 1.06 16 45 H 0.14 0.40 8.14 -2.38 -0.02 0.38 16 46 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.13 1.46 4.51 -2.38 -0.01 1.45 16 48 H 0.09 1.45 8.14 -2.38 -0.02 1.44 16 49 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.13 2.32 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -79.85 406.62 2.27 -77.58 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: 0.23 Total: 35.56 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.70 Total: -6.21 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -4.09 Total: -120.41 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -1.59 Total: -35.86 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -79.85 2.27 -77.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502057968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.179 kcal (2) G-P(sol) polarization free energy of solvation -79.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds