Wall clock time and date at job start Wed Apr 1 2020 02:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99901 * 2 1 4 4 H 1.48503 * 109.47156 * 270.00582 * 3 2 1 5 5 H 1.48500 * 109.46711 * 30.00317 * 3 2 1 6 6 H 1.48496 * 109.47022 * 150.00242 * 3 2 1 7 7 C 1.38808 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99827 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99978 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00126 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47514 * 184.94850 * 10 9 7 12 12 H 1.08997 * 109.69827 * 61.26678 * 11 10 9 13 13 C 1.52760 * 109.50990 * 301.15568 * 11 10 9 14 14 C 1.53037 * 109.38377 * 185.70274 * 13 11 10 15 15 C 1.53040 * 109.53715 * 61.23655 * 14 13 11 16 16 C 1.53191 * 109.31589 * 298.63523 * 15 14 13 17 17 N 1.46924 * 109.58777 * 181.62426 * 11 10 9 18 18 C 1.34776 * 120.63231 * 353.42053 * 17 11 10 19 19 O 1.21284 * 119.99869 * 354.14217 * 18 17 11 20 20 C 1.50699 * 120.00127 * 174.13681 * 18 17 11 21 21 C 1.53001 * 109.47030 * 180.02562 * 20 18 17 22 22 H 1.09003 * 110.12714 * 306.69670 * 21 20 18 23 23 O 1.43933 * 110.21503 * 68.43588 * 21 20 18 24 24 C 1.43941 * 104.95105 * 90.71052 * 23 21 20 25 25 C 1.51081 * 105.95899 * 28.44265 * 24 23 21 26 26 C 1.37963 * 132.69115 * 162.33834 * 25 24 23 27 27 C 1.38297 * 119.91773 * 179.75992 * 26 25 24 28 28 C 1.38263 * 120.04362 * 0.46755 * 27 26 25 29 29 C 1.38294 * 120.03691 * 359.51183 * 28 27 26 30 30 C 1.37962 * 119.92452 * 0.25488 * 29 28 27 31 31 H 0.97000 * 120.00195 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00332 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.46627 * 64.95165 * 10 9 7 34 34 H 1.09001 * 109.47303 * 304.95615 * 10 9 7 35 35 H 1.08999 * 109.56792 * 65.66909 * 13 11 10 36 36 H 1.09003 * 109.38275 * 305.62676 * 13 11 10 37 37 H 1.09000 * 109.45888 * 301.21941 * 14 13 11 38 38 H 1.08993 * 109.45250 * 181.25365 * 14 13 11 39 39 H 1.09004 * 109.49526 * 178.68463 * 15 14 13 40 40 H 1.09004 * 109.52621 * 58.60525 * 15 14 13 41 41 H 1.08993 * 109.58873 * 294.85213 * 16 15 14 42 42 H 1.09002 * 109.59013 * 174.42125 * 16 15 14 43 43 H 1.08999 * 109.46944 * 59.99804 * 20 18 17 44 44 H 1.09001 * 109.46751 * 299.99940 * 20 18 17 45 45 H 1.09005 * 110.15582 * 147.56723 * 24 23 21 46 46 H 1.09004 * 110.15581 * 269.25194 * 24 23 21 47 47 H 1.07998 * 120.04043 * 359.97287 * 26 25 24 48 48 H 1.07997 * 119.97937 * 180.25738 * 27 26 25 49 49 H 1.07997 * 119.98197 * 179.78702 * 28 27 26 50 50 H 1.08003 * 120.03573 * 180.27289 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0687 -4.8170 -0.1250 12 1 0.5238 -4.7360 -1.0655 13 6 0.0812 -4.7726 1.0397 14 6 -0.8161 -6.0114 0.9925 15 6 0.0423 -7.2707 1.1324 16 6 1.0292 -7.3437 -0.0369 17 7 1.7975 -6.0922 -0.0861 18 6 3.1450 -6.1134 -0.0899 19 8 3.7673 -5.0822 -0.2326 20 6 3.8786 -7.4183 0.0832 21 6 5.3869 -7.1648 0.0421 22 1 5.6504 -6.6151 -0.8616 23 8 5.7996 -6.4290 1.2083 24 6 6.1417 -7.4344 2.1799 25 6 6.5948 -8.6393 1.3890 26 6 7.3206 -9.7623 1.7287 27 6 7.5865 -10.7267 0.7738 28 6 7.1340 -10.5609 -0.5221 29 6 6.4061 -9.4354 -0.8626 30 6 6.1366 -8.4756 0.0911 31 1 -0.4850 0.8400 0.0004 32 1 0.3557 -2.3880 -0.0005 33 1 2.6166 -3.7538 0.9305 34 1 2.7498 -3.6770 -0.8428 35 1 -0.5330 -3.8754 0.9635 36 1 0.6318 -4.7578 1.9804 37 1 -1.3480 -6.0383 0.0415 38 1 -1.5357 -5.9697 1.8100 39 1 -0.5998 -8.1515 1.1221 40 1 0.5936 -7.2333 2.0720 41 1 0.4812 -7.4728 -0.9702 42 1 1.7082 -8.1837 0.1098 43 1 3.6023 -8.1000 -0.7212 44 1 3.6110 -7.8610 1.0427 45 1 6.9499 -7.0792 2.8193 46 1 5.2693 -7.6861 2.7830 47 1 7.6776 -9.8898 2.7400 48 1 8.1510 -11.6081 1.0397 49 1 7.3452 -11.3130 -1.2679 50 1 6.0489 -9.3081 -1.8738 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505411240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:12 Heat of formation + Delta-G solvation = -16.904967 kcal Electronic energy + Delta-G solvation = -30786.460741 eV Core-core repulsion = 26779.618296 eV Total energy + Delta-G solvation = -4006.842445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.22264 -40.09830 -37.75534 -37.00795 -34.72962 -32.94931 -32.46749 -31.86417 -31.55727 -30.22374 -29.59857 -26.99829 -25.94001 -24.50096 -24.14286 -23.00056 -21.84020 -21.58649 -20.93591 -20.44337 -18.80238 -17.24829 -16.92178 -16.85931 -16.52292 -16.10880 -15.76481 -15.33482 -15.19833 -14.46711 -14.31351 -14.28129 -14.08279 -13.97378 -13.65308 -13.45843 -13.36884 -13.19362 -12.96652 -12.80869 -12.64081 -12.49945 -12.13293 -11.99258 -11.80798 -11.52911 -11.46286 -11.11932 -10.95923 -10.88133 -10.77127 -10.64309 -10.47070 -10.29245 -10.15396 -9.90565 -9.56872 -9.26210 -8.92520 -8.79857 -8.56297 -8.26478 -6.68997 -5.60204 -2.85906 0.87932 0.97796 2.88612 3.09841 3.34216 3.55615 3.60012 3.63467 3.78097 3.90138 4.30500 4.57365 4.62277 4.66429 4.69437 4.77876 4.86555 4.88522 4.96705 5.03555 5.09450 5.13351 5.20598 5.23116 5.29150 5.34659 5.42809 5.49457 5.54377 5.64775 5.67070 5.74671 5.75060 5.84718 5.87614 6.01039 6.03901 6.05771 6.08641 6.11637 6.28479 6.33386 6.35754 6.53317 6.61911 6.66763 6.84300 7.20550 7.39545 7.67490 7.91639 8.49678 8.62869 9.70655 10.30405 10.65397 11.63626 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.002841 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.044492 B = 9853.427885 C =11399.701109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.021 4.021 3 Si 0.905 3.095 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.070 0.930 9 N -0.738 5.738 10 C 0.160 3.840 11 C 0.141 3.859 12 H 0.069 0.931 13 C -0.127 4.127 14 C -0.120 4.120 15 C -0.134 4.134 16 C 0.109 3.891 17 N -0.610 5.610 18 C 0.510 3.490 19 O -0.501 6.501 20 C -0.154 4.154 21 C 0.137 3.863 22 H 0.114 0.886 23 O -0.330 6.330 24 C 0.081 3.919 25 C -0.125 4.125 26 C -0.096 4.096 27 C -0.116 4.116 28 C -0.118 4.118 29 C -0.091 4.091 30 C -0.123 4.123 31 H 0.252 0.748 32 H 0.378 0.622 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.125 0.875 48 H 0.127 0.873 49 H 0.127 0.873 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.223 -29.016 1.878 30.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.216 4.216 3 Si 0.737 3.263 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.353 4.353 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.034 3.966 11 C 0.038 3.962 12 H 0.087 0.913 13 C -0.166 4.166 14 C -0.158 4.158 15 C -0.173 4.173 16 C -0.015 4.015 17 N -0.345 5.345 18 C 0.297 3.703 19 O -0.375 6.375 20 C -0.194 4.194 21 C 0.079 3.921 22 H 0.131 0.869 23 O -0.247 6.247 24 C 0.004 3.996 25 C -0.126 4.126 26 C -0.115 4.115 27 C -0.134 4.134 28 C -0.136 4.136 29 C -0.109 4.109 30 C -0.123 4.123 31 H 0.062 0.938 32 H 0.212 0.788 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.093 0.907 47 H 0.143 0.857 48 H 0.145 0.855 49 H 0.145 0.855 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.734 -28.091 1.833 29.475 hybrid contribution -0.062 0.486 0.090 0.498 sum 8.672 -27.605 1.923 28.999 Atomic orbital electron populations 1.69658 1.05010 1.25270 1.59144 1.24693 0.95526 0.97483 1.03887 0.86187 0.78688 0.83998 0.77425 1.21921 1.21975 1.20805 1.19263 0.91156 0.84041 1.40802 0.91167 1.42594 1.05681 1.00481 1.89650 1.21293 0.91605 0.83267 1.00453 1.21468 0.93688 0.82979 0.98031 0.91314 1.21868 0.97648 0.98211 0.98834 1.21542 0.97796 0.94463 1.01972 1.21921 0.98032 0.98680 0.98641 1.21695 0.94612 0.86281 0.98885 1.48168 1.05201 1.07122 1.74048 1.20327 0.82046 0.90694 0.77259 1.90861 1.66704 1.33025 1.46913 1.22171 0.95383 0.97377 1.04502 1.21054 0.90816 0.88510 0.91746 0.86859 1.89361 1.85826 1.26586 1.22953 1.21836 1.00147 0.85590 0.91987 1.21165 0.98738 0.97000 0.95666 1.20417 0.98200 0.92902 0.99934 1.21145 1.00063 0.98898 0.93285 1.21141 0.98264 0.97511 0.96645 1.20457 0.98451 0.93130 0.98877 1.21049 0.99290 0.97134 0.94811 0.93821 0.78828 0.95793 0.92538 0.89605 0.91759 0.91907 0.91865 0.91156 0.91633 0.91418 0.90261 0.88208 0.88822 0.88422 0.90705 0.85734 0.85548 0.85478 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.64 13.06 55.49 0.72 -28.92 16 2 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 3 Si 0.91 23.87 29.55 -169.99 -5.02 18.84 16 4 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 5 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 6 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.22 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.74 -20.20 5.38 -59.91 -0.32 -20.52 16 10 C 0.16 3.74 4.14 -4.04 -0.02 3.73 16 11 C 0.14 2.53 3.09 -67.82 -0.21 2.32 16 12 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.13 -2.09 5.07 -26.84 -0.14 -2.22 16 14 C -0.12 -1.45 5.89 -26.69 -0.16 -1.61 16 15 C -0.13 -1.31 6.08 -26.61 -0.16 -1.48 16 16 C 0.11 1.09 6.35 -3.71 -0.02 1.06 16 17 N -0.61 -8.85 2.98 -165.48 -0.49 -9.34 16 18 C 0.51 7.95 7.44 -10.99 -0.08 7.87 16 19 O -0.50 -10.22 11.13 -3.42 -0.04 -10.26 16 20 C -0.15 -1.69 3.73 -27.88 -0.10 -1.80 16 21 C 0.14 1.69 2.92 -27.70 -0.08 1.61 16 22 H 0.11 1.51 7.92 -51.93 -0.41 1.10 16 23 O -0.33 -4.87 10.91 -44.21 -0.48 -5.35 16 24 C 0.08 0.86 7.38 36.19 0.27 1.13 16 25 C -0.13 -1.23 6.32 -104.40 -0.66 -1.89 16 26 C -0.10 -0.76 10.04 -39.66 -0.40 -1.16 16 27 C -0.12 -0.80 10.05 -39.55 -0.40 -1.20 16 28 C -0.12 -0.83 10.05 -39.55 -0.40 -1.23 16 29 C -0.09 -0.76 10.04 -39.66 -0.40 -1.15 16 30 C -0.12 -1.25 5.63 -104.40 -0.59 -1.83 16 31 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.38 10.49 6.35 -40.82 -0.26 10.23 16 33 H 0.02 0.62 7.26 -51.93 -0.38 0.24 16 34 H 0.06 1.45 6.21 -51.93 -0.32 1.12 16 35 H 0.09 1.60 6.88 -51.93 -0.36 1.24 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 43 H 0.10 0.83 7.71 -51.93 -0.40 0.43 16 44 H 0.09 0.92 7.74 -51.93 -0.40 0.52 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 48 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 49 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 50 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -36.42 391.67 -11.40 -47.82 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.88 Total: 7.29 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -3.79 Total: -5.46 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.09 Total: -58.79 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.52 Total: -15.61 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.02 Total: 18.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.42 -11.40 -47.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505411240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.917 kcal (2) G-P(sol) polarization free energy of solvation -36.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds