Wall clock time and date at job start Wed Apr 1 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00042 * 2 1 4 4 H 1.48505 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46940 * 300.00014 * 3 2 1 6 6 H 1.48496 * 109.47343 * 59.99853 * 3 2 1 7 7 C 1.37874 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46810 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46851 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47175 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99900 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99994 * 179.72435 * 13 12 11 16 16 C 1.48116 * 127.03342 * 359.68333 * 15 13 12 17 17 C 1.54601 * 103.41978 * 219.28534 * 16 15 13 18 18 C 1.54614 * 102.91058 * 322.86797 * 17 16 15 19 19 C 1.50704 * 110.32532 * 262.80395 * 18 17 16 20 20 N 1.34773 * 120.00197 * 301.47491 * 19 18 17 21 21 O 1.21282 * 119.99669 * 121.47481 * 19 18 17 22 22 C 1.50705 * 110.41313 * 140.63838 * 18 17 16 23 23 C 1.38238 * 119.99782 * 309.31190 * 22 18 17 24 24 C 1.38226 * 119.99966 * 179.81154 * 23 22 18 25 25 C 1.38240 * 119.99879 * 0.39491 * 24 23 22 26 26 C 1.38232 * 120.00018 * 359.85994 * 25 24 23 27 27 C 1.38231 * 120.00136 * 359.95725 * 26 25 24 28 28 C 1.47486 * 127.03087 * 179.97438 * 15 13 12 29 29 H 0.96995 * 119.99834 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46973 * 60.00617 * 9 7 2 31 31 H 1.08993 * 109.47203 * 300.00101 * 9 7 2 32 32 H 1.09004 * 109.46640 * 60.00494 * 10 9 7 33 33 H 1.08993 * 109.47243 * 300.00157 * 10 9 7 34 34 H 1.08996 * 109.47306 * 60.00454 * 11 10 9 35 35 H 1.09002 * 109.47215 * 299.99860 * 11 10 9 36 36 H 1.08996 * 109.47117 * 59.99944 * 12 11 10 37 37 H 1.09006 * 109.47199 * 299.99973 * 12 11 10 38 38 H 1.09000 * 110.66226 * 337.76805 * 16 15 13 39 39 H 1.09000 * 110.66033 * 100.88358 * 16 15 13 40 40 H 1.09001 * 110.83339 * 204.44277 * 17 16 15 41 41 H 1.08996 * 110.72975 * 81.24253 * 17 16 15 42 42 H 0.96997 * 120.00038 * 4.80621 * 20 19 18 43 43 H 0.97002 * 119.99688 * 184.80002 * 20 19 18 44 44 H 1.08004 * 119.99678 * 0.02562 * 23 22 18 45 45 H 1.07997 * 120.00133 * 180.23289 * 24 23 22 46 46 H 1.08001 * 119.99694 * 179.82988 * 25 24 23 47 47 H 1.07998 * 120.00109 * 179.97438 * 26 25 24 48 48 H 1.07999 * 119.99952 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.91389 * 273.87793 * 28 15 13 50 50 H 1.08996 * 109.91243 * 34.96750 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 6 2.4746 -6.1500 -0.0031 13 6 1.7211 -7.4551 -0.0044 14 8 0.5083 -7.4551 -0.0043 15 7 2.3950 -8.6223 -0.0107 16 6 3.8650 -8.8036 -0.0236 17 6 4.0704 -10.0023 -0.9781 18 6 2.8640 -10.9132 -0.6532 19 6 3.2690 -11.9913 0.3189 20 7 4.2616 -12.8461 0.0021 21 8 2.7016 -12.0896 1.3862 22 6 2.3140 -11.5270 -1.9149 23 6 2.0181 -10.7253 -3.0015 24 6 1.5173 -11.2887 -4.1601 25 6 1.3048 -12.6529 -4.2294 26 6 1.5957 -13.4539 -3.1411 27 6 2.1001 -12.8910 -1.9837 28 6 1.8195 -9.9802 -0.0123 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6248 -2.5571 0.8896 32 1 2.8726 -3.6047 0.8878 33 1 2.8713 -3.6039 -0.8922 34 1 0.8533 -5.0442 -0.8922 35 1 0.8540 -5.0455 0.8878 36 1 3.1013 -6.0927 0.8868 37 1 3.1012 -6.0918 -0.8931 38 1 4.3589 -7.9135 -0.4133 39 1 4.2318 -9.0422 0.9748 40 1 5.0089 -10.5130 -0.7626 41 1 4.0395 -9.6771 -2.0179 42 1 4.7620 -12.7251 -0.8200 43 1 4.4757 -13.5823 0.5963 44 1 2.1815 -9.6591 -2.9463 45 1 1.2897 -10.6628 -5.0103 46 1 0.9109 -13.0927 -5.1338 47 1 1.4292 -14.5196 -3.1951 48 1 2.3278 -13.5169 -1.1336 49 1 1.6152 -10.2980 1.0100 50 1 0.8989 -9.9926 -0.5958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525471466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:25 Heat of formation + Delta-G solvation = -62.166541 kcal Electronic energy + Delta-G solvation = -29611.830912 eV Core-core repulsion = 25603.025778 eV Total energy + Delta-G solvation = -4008.805134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.60793 -39.49999 -39.08304 -37.26670 -34.86876 -34.46269 -33.09838 -32.53560 -31.34613 -30.50709 -29.87784 -28.70149 -26.03648 -24.45951 -23.76963 -22.69872 -22.24048 -22.02035 -20.01110 -19.84446 -19.26017 -18.33804 -17.66219 -17.04602 -16.57804 -16.17815 -16.13125 -15.50886 -15.45676 -15.25966 -15.04818 -14.67455 -14.40663 -14.10494 -14.00722 -13.70597 -13.61164 -13.34941 -13.00399 -12.62271 -12.51698 -12.35072 -12.09219 -12.01295 -11.81423 -11.62257 -11.56345 -11.52476 -11.30345 -10.97924 -10.51393 -10.46838 -10.40254 -10.37783 -10.16879 -9.80026 -9.58909 -9.34867 -9.27947 -9.19737 -8.94987 -8.74973 -8.28874 -5.93353 -3.95760 0.84608 0.96590 2.06064 2.67607 2.73100 3.04022 3.28089 3.34297 3.41402 3.45272 3.94714 4.00321 4.02289 4.37816 4.50394 4.52858 4.57309 4.70116 4.72794 4.78701 4.83846 5.05533 5.11868 5.17920 5.20713 5.32737 5.37540 5.41804 5.42507 5.50557 5.57998 5.59803 5.71224 5.84000 6.01217 6.03570 6.08726 6.11036 6.16434 6.24954 6.33821 6.53289 6.57390 6.75340 6.86706 7.04382 7.22512 7.42947 7.70991 7.76719 7.92750 8.08383 8.22672 8.50033 9.12232 9.67780 11.18006 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.001901 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.033970 B =14725.095812 C =15439.946835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.133 4.133 13 C 0.532 3.468 14 O -0.530 6.530 15 N -0.627 5.627 16 C 0.098 3.902 17 C -0.123 4.123 18 C -0.053 4.053 19 C 0.538 3.462 20 N -0.852 5.852 21 O -0.528 6.528 22 C -0.073 4.073 23 C -0.101 4.101 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.116 4.116 27 C -0.118 4.118 28 C 0.120 3.880 29 H 0.259 0.741 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.403 0.597 43 H 0.404 0.596 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.092 0.908 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.290 -33.060 -7.261 36.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.172 4.172 13 C 0.322 3.678 14 O -0.405 6.405 15 N -0.363 5.363 16 C -0.026 4.026 17 C -0.162 4.162 18 C -0.057 4.057 19 C 0.321 3.679 20 N -0.417 5.417 21 O -0.403 6.403 22 C -0.073 4.073 23 C -0.119 4.119 24 C -0.132 4.132 25 C -0.135 4.135 26 C -0.134 4.134 27 C -0.136 4.136 28 C -0.003 4.003 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.233 0.767 43 H 0.236 0.764 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.110 0.890 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.921 -32.730 -6.597 35.129 hybrid contribution 0.836 0.529 -0.202 1.010 sum 11.757 -32.201 -6.799 34.948 Atomic orbital electron populations 1.69985 1.06037 1.26374 1.51042 1.25052 0.94847 0.99244 0.95524 0.86559 0.80066 0.83956 0.77528 1.19792 1.21075 1.21068 1.21318 0.92999 0.91182 1.50209 0.92710 1.19105 0.94078 0.91276 0.97343 1.21643 0.99061 0.93961 1.00035 1.21473 0.97034 0.92649 1.03038 1.21783 1.00062 0.91527 1.03863 1.20819 0.87897 0.84045 0.74995 1.90728 1.13998 1.86816 1.48937 1.48882 1.07064 1.05258 1.75099 1.22501 0.81700 0.98704 0.99670 1.22937 0.96090 0.95379 1.01758 1.20559 0.97703 0.94689 0.92732 1.20000 0.79190 0.81955 0.86726 1.43869 1.37656 1.32340 1.27800 1.90780 1.53797 1.71792 1.23905 1.19300 1.01016 0.93580 0.93415 1.21006 0.98428 0.99995 0.92506 1.21200 0.98758 0.95208 0.97987 1.21233 0.99589 0.93948 0.98727 1.21122 0.99106 0.99982 0.93214 1.21158 0.99926 0.94130 0.98413 1.22005 0.95239 0.80475 1.02588 0.93110 0.96585 0.96560 0.93473 0.93503 0.91770 0.91741 0.89140 0.89200 0.88875 0.90616 0.89361 0.88806 0.76746 0.76447 0.85570 0.85593 0.85883 0.85895 0.85938 0.88969 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.72 13.29 55.43 0.74 -26.99 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.13 -1.82 4.64 -27.88 -0.13 -1.95 16 13 C 0.53 7.96 7.89 -10.98 -0.09 7.87 16 14 O -0.53 -10.26 16.32 5.56 0.09 -10.17 16 15 N -0.63 -7.21 3.29 -169.97 -0.56 -7.77 16 16 C 0.10 0.72 6.93 -2.31 -0.02 0.71 16 17 C -0.12 -0.67 5.89 -25.04 -0.15 -0.82 16 18 C -0.05 -0.41 0.66 -155.43 -0.10 -0.51 16 19 C 0.54 4.30 5.28 -10.98 -0.06 4.24 16 20 N -0.85 -3.17 7.40 31.22 0.23 -2.94 16 21 O -0.53 -6.55 16.10 5.56 0.09 -6.46 16 22 C -0.07 -0.55 4.65 -104.62 -0.49 -1.04 16 23 C -0.10 -0.80 8.42 -39.59 -0.33 -1.13 16 24 C -0.11 -0.82 10.05 -39.58 -0.40 -1.21 16 25 C -0.12 -0.76 10.05 -39.58 -0.40 -1.15 16 26 C -0.12 -0.74 10.05 -39.59 -0.40 -1.14 16 27 C -0.12 -0.83 8.89 -39.58 -0.35 -1.18 16 28 C 0.12 1.38 6.05 -2.97 -0.02 1.36 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.03 7.89 -51.93 -0.41 0.62 16 38 H 0.09 0.56 7.22 -51.93 -0.38 0.18 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.27 7.19 -51.93 -0.37 -0.10 16 41 H 0.09 0.47 6.51 -51.93 -0.34 0.13 16 42 H 0.40 0.59 8.28 -40.82 -0.34 0.25 16 43 H 0.40 1.07 8.93 -40.82 -0.36 0.71 16 44 H 0.13 1.02 7.35 -52.48 -0.39 0.63 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 47 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 48 H 0.12 0.79 6.00 -52.49 -0.32 0.48 16 49 H 0.09 1.23 6.44 -51.93 -0.33 0.90 16 50 H 0.08 1.10 7.42 -51.93 -0.39 0.72 16 LS Contribution 404.40 15.07 6.09 6.09 Total: -1.00 -37.52 404.40 -9.88 -47.40 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -7.81 Total: -2.29 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.73 Total: -13.87 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.41 Total: -37.70 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.18 Total: -16.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.52 -9.88 -47.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525471466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.772 kcal (2) G-P(sol) polarization free energy of solvation -37.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds