Wall clock time and date at job start Wed Apr 1 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00042 * 2 1 4 4 H 1.48505 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46940 * 300.00014 * 3 2 1 6 6 H 1.48496 * 109.47343 * 59.99853 * 3 2 1 7 7 C 1.37874 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46810 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46851 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47175 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99900 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99994 * 179.72435 * 13 12 11 16 16 C 1.48116 * 127.03342 * 359.68333 * 15 13 12 17 17 C 1.54601 * 103.41978 * 219.28534 * 16 15 13 18 18 C 1.54614 * 102.91058 * 322.86797 * 17 16 15 19 19 C 1.50704 * 110.32532 * 262.80395 * 18 17 16 20 20 N 1.34773 * 120.00197 * 301.47491 * 19 18 17 21 21 O 1.21282 * 119.99669 * 121.47481 * 19 18 17 22 22 C 1.50705 * 110.41313 * 140.63838 * 18 17 16 23 23 C 1.38238 * 119.99782 * 309.31190 * 22 18 17 24 24 C 1.38226 * 119.99966 * 179.81154 * 23 22 18 25 25 C 1.38240 * 119.99879 * 0.39491 * 24 23 22 26 26 C 1.38232 * 120.00018 * 359.85994 * 25 24 23 27 27 C 1.38231 * 120.00136 * 359.95725 * 26 25 24 28 28 C 1.47486 * 127.03087 * 179.97438 * 15 13 12 29 29 H 0.96995 * 119.99834 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46973 * 60.00617 * 9 7 2 31 31 H 1.08993 * 109.47203 * 300.00101 * 9 7 2 32 32 H 1.09004 * 109.46640 * 60.00494 * 10 9 7 33 33 H 1.08993 * 109.47243 * 300.00157 * 10 9 7 34 34 H 1.08996 * 109.47306 * 60.00454 * 11 10 9 35 35 H 1.09002 * 109.47215 * 299.99860 * 11 10 9 36 36 H 1.08996 * 109.47117 * 59.99944 * 12 11 10 37 37 H 1.09006 * 109.47199 * 299.99973 * 12 11 10 38 38 H 1.09000 * 110.66226 * 337.76805 * 16 15 13 39 39 H 1.09000 * 110.66033 * 100.88358 * 16 15 13 40 40 H 1.09001 * 110.83339 * 204.44277 * 17 16 15 41 41 H 1.08996 * 110.72975 * 81.24253 * 17 16 15 42 42 H 0.96997 * 120.00038 * 4.80621 * 20 19 18 43 43 H 0.97002 * 119.99688 * 184.80002 * 20 19 18 44 44 H 1.08004 * 119.99678 * 0.02562 * 23 22 18 45 45 H 1.07997 * 120.00133 * 180.23289 * 24 23 22 46 46 H 1.08001 * 119.99694 * 179.82988 * 25 24 23 47 47 H 1.07998 * 120.00109 * 179.97438 * 26 25 24 48 48 H 1.07999 * 119.99952 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.91389 * 273.87793 * 28 15 13 50 50 H 1.08996 * 109.91243 * 34.96750 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 6 2.4746 -6.1500 -0.0031 13 6 1.7211 -7.4551 -0.0044 14 8 0.5083 -7.4551 -0.0043 15 7 2.3950 -8.6223 -0.0107 16 6 3.8650 -8.8036 -0.0236 17 6 4.0704 -10.0023 -0.9781 18 6 2.8640 -10.9132 -0.6532 19 6 3.2690 -11.9913 0.3189 20 7 4.2616 -12.8461 0.0021 21 8 2.7016 -12.0896 1.3862 22 6 2.3140 -11.5270 -1.9149 23 6 2.0181 -10.7253 -3.0015 24 6 1.5173 -11.2887 -4.1601 25 6 1.3048 -12.6529 -4.2294 26 6 1.5957 -13.4539 -3.1411 27 6 2.1001 -12.8910 -1.9837 28 6 1.8195 -9.9802 -0.0123 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6248 -2.5571 0.8896 32 1 2.8726 -3.6047 0.8878 33 1 2.8713 -3.6039 -0.8922 34 1 0.8533 -5.0442 -0.8922 35 1 0.8540 -5.0455 0.8878 36 1 3.1013 -6.0927 0.8868 37 1 3.1012 -6.0918 -0.8931 38 1 4.3589 -7.9135 -0.4133 39 1 4.2318 -9.0422 0.9748 40 1 5.0089 -10.5130 -0.7626 41 1 4.0395 -9.6771 -2.0179 42 1 4.7620 -12.7251 -0.8200 43 1 4.4757 -13.5823 0.5963 44 1 2.1815 -9.6591 -2.9463 45 1 1.2897 -10.6628 -5.0103 46 1 0.9109 -13.0927 -5.1338 47 1 1.4292 -14.5196 -3.1951 48 1 2.3278 -13.5169 -1.1336 49 1 1.6152 -10.2980 1.0100 50 1 0.8989 -9.9926 -0.5958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525471466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:23 Heat of formation + Delta-G solvation = -87.636761 kcal Electronic energy + Delta-G solvation = -29612.935384 eV Core-core repulsion = 25603.025778 eV Total energy + Delta-G solvation = -4009.909606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.28987 -40.54782 -39.66394 -38.14531 -36.61816 -35.09242 -34.62525 -33.71553 -31.87529 -31.60845 -31.03976 -29.58825 -27.61200 -25.70645 -24.39034 -23.68471 -23.24633 -22.77750 -21.73972 -20.46515 -20.27486 -18.89587 -18.44294 -18.32350 -17.86043 -17.24392 -17.09252 -16.65967 -16.39372 -16.10489 -16.05177 -15.80126 -15.51052 -14.99846 -14.80999 -14.56378 -14.48472 -14.17902 -14.11387 -13.92482 -13.74101 -13.50273 -13.31789 -13.18301 -12.88167 -12.83101 -12.69071 -12.36364 -12.29511 -12.14895 -12.13453 -12.08329 -11.86433 -11.37772 -11.34934 -11.15170 -11.06616 -10.82523 -10.67572 -10.55244 -9.97148 -9.87592 -9.57944 -8.17994 -6.30149 0.30763 0.43474 1.40895 1.42059 1.44185 1.55509 1.57544 1.81106 2.42292 2.44251 2.73072 3.14741 3.27158 3.40806 3.44568 3.72958 3.93050 4.00142 4.02809 4.06747 4.12683 4.16725 4.25393 4.30462 4.45658 4.55488 4.62645 4.63354 4.65908 4.68018 4.74868 4.79281 4.82847 4.86946 4.98965 5.04213 5.08780 5.18074 5.19470 5.34752 5.37794 5.51009 5.54170 5.57572 5.59192 5.78789 5.84351 5.88886 6.02615 6.25862 6.33391 6.44219 6.88693 7.10411 7.23799 7.39463 8.94537 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.001901 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.033970 B =14725.095812 C =15439.946835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.010 4.010 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.017 3.983 10 C -0.093 4.093 11 C -0.096 4.096 12 C -0.119 4.119 13 C 0.527 3.473 14 O -0.590 6.590 15 N -0.620 5.620 16 C 0.088 3.912 17 C -0.114 4.114 18 C -0.043 4.043 19 C 0.540 3.460 20 N -0.826 5.826 21 O -0.579 6.579 22 C -0.078 4.078 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.124 4.124 28 C 0.119 3.881 29 H 0.262 0.738 30 H -0.015 1.015 31 H -0.018 1.018 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.419 0.581 43 H 0.413 0.587 44 H 0.120 0.880 45 H 0.135 0.865 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.127 0.873 49 H 0.068 0.932 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.257 -34.068 -8.433 38.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.795 3.205 4 H -0.179 1.179 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.086 0.914 9 C -0.020 4.020 10 C -0.131 4.131 11 C -0.135 4.135 12 C -0.159 4.159 13 C 0.318 3.682 14 O -0.470 6.470 15 N -0.354 5.354 16 C -0.034 4.034 17 C -0.152 4.152 18 C -0.047 4.047 19 C 0.324 3.676 20 N -0.391 5.391 21 O -0.458 6.458 22 C -0.079 4.079 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.142 4.142 28 C -0.005 4.005 29 H 0.071 0.929 30 H 0.003 0.997 31 H 0.001 0.999 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.251 0.749 43 H 0.246 0.754 44 H 0.138 0.862 45 H 0.153 0.847 46 H 0.161 0.839 47 H 0.161 0.839 48 H 0.145 0.855 49 H 0.086 0.914 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.991 -33.800 -7.801 37.789 hybrid contribution -0.454 0.745 0.141 0.884 sum 14.538 -33.054 -7.660 36.914 Atomic orbital electron populations 1.70146 1.08112 1.27659 1.52028 1.26125 0.95804 1.03846 0.94878 0.85315 0.79250 0.78331 0.77616 1.17920 1.20476 1.20617 1.21781 0.93790 0.92099 1.49962 0.91398 1.19072 0.94734 0.93915 0.94260 1.21432 0.97761 0.92408 1.01489 1.21262 0.97499 0.93739 1.00954 1.21654 0.98855 0.88601 1.06741 1.21030 0.87264 0.85360 0.74504 1.90704 1.16536 1.87733 1.52008 1.48859 1.09166 1.04317 1.73069 1.22891 0.78771 1.00763 1.00939 1.23014 0.96236 0.94109 1.01859 1.20406 0.97556 0.94352 0.92415 1.19999 0.79468 0.82264 0.85882 1.43652 1.35982 1.31218 1.28241 1.90770 1.55811 1.73215 1.25983 1.19278 1.01631 0.93910 0.93077 1.21046 0.99222 0.99814 0.93079 1.21417 0.98726 0.95937 0.98129 1.21514 0.99037 0.93681 0.99564 1.21410 0.98321 1.01124 0.92804 1.21273 1.00080 0.93949 0.98898 1.21915 0.95968 0.81413 1.01183 0.92900 0.99691 0.99920 0.92042 0.91669 0.93763 0.94247 0.86524 0.85743 0.86371 0.89892 0.86056 0.87761 0.74948 0.75374 0.86173 0.84674 0.83949 0.83884 0.85545 0.91386 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.70 13.29 21.45 0.28 -59.41 16 2 C -0.01 -0.57 5.46 84.65 0.46 -0.11 16 3 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.09 -3.84 5.15 30.60 0.16 -3.68 16 11 C -0.10 -3.59 4.50 30.60 0.14 -3.45 16 12 C -0.12 -3.08 4.64 29.85 0.14 -2.94 16 13 C 0.53 15.97 7.89 87.66 0.69 16.66 16 14 O -0.59 -24.35 16.32 -3.03 -0.05 -24.40 16 15 N -0.62 -14.06 3.29 -810.05 -2.67 -16.73 16 16 C 0.09 1.06 6.93 86.61 0.60 1.66 16 17 C -0.11 -0.92 5.89 31.69 0.19 -0.73 16 18 C -0.04 -0.63 0.66 -52.78 -0.03 -0.66 16 19 C 0.54 8.05 5.28 87.66 0.46 8.51 16 20 N -0.83 -4.13 7.40 -173.53 -1.28 -5.41 16 21 O -0.58 -14.55 16.10 -3.03 -0.05 -14.59 16 22 C -0.08 -1.12 4.65 -19.86 -0.09 -1.21 16 23 C -0.11 -1.72 8.42 22.27 0.19 -1.54 16 24 C -0.12 -1.66 10.05 22.27 0.22 -1.44 16 25 C -0.12 -1.35 10.05 22.27 0.22 -1.12 16 26 C -0.12 -1.30 10.05 22.27 0.22 -1.07 16 27 C -0.12 -1.57 8.89 22.27 0.20 -1.37 16 28 C 0.12 2.84 6.05 86.54 0.52 3.37 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 31 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 32 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 34 H 0.04 1.79 8.10 -2.39 -0.02 1.78 16 35 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.12 2.39 7.89 -2.38 -0.02 2.37 16 38 H 0.12 0.89 7.22 -2.39 -0.02 0.87 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.12 0.21 7.19 -2.39 -0.02 0.19 16 41 H 0.10 0.70 6.51 -2.39 -0.02 0.69 16 42 H 0.42 -0.22 8.28 -92.71 -0.77 -0.99 16 43 H 0.41 1.20 8.93 -92.71 -0.83 0.37 16 44 H 0.12 1.91 7.35 -2.91 -0.02 1.89 16 45 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 46 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 47 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 48 H 0.13 1.45 6.00 -2.91 -0.02 1.44 16 49 H 0.07 1.97 6.44 -2.39 -0.02 1.96 16 50 H 0.06 1.70 7.42 -2.39 -0.02 1.69 16 Total: -1.00 -87.48 404.40 2.30 -85.18 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -0.63 Total: 7.44 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 4.67 Total: -19.14 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -3.67 Total: -81.55 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.10 Total: -39.00 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -87.48 2.30 -85.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525471466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.459 kcal (2) G-P(sol) polarization free energy of solvation -87.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds