Wall clock time and date at job start Wed Apr 1 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99748 * 2 1 4 4 H 1.48498 * 109.47354 * 240.00312 * 3 2 1 5 5 H 1.48500 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47062 * 119.99996 * 3 2 1 7 7 C 1.38807 * 120.00588 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00702 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.64669 * 345.71484 * 9 7 2 11 11 C 1.54915 * 104.83009 * 204.16267 * 10 9 7 12 12 C 1.55403 * 101.66470 * 323.07474 * 11 10 9 13 13 C 1.47018 * 125.64752 * 165.75456 * 9 7 2 14 14 H 1.08998 * 109.88565 * 59.33329 * 13 9 7 15 15 C 1.53003 * 109.88353 * 298.32239 * 13 9 7 16 16 C 1.53000 * 109.47171 * 174.65167 * 15 13 9 17 17 C 1.52999 * 109.47199 * 185.07232 * 16 15 13 18 18 N 1.46499 * 109.47317 * 179.97438 * 17 16 15 19 19 C 1.34778 * 120.00034 * 179.97438 * 18 17 16 20 20 O 1.21280 * 119.99889 * 0.02562 * 19 18 17 21 21 C 1.50694 * 119.99977 * 180.02562 * 19 18 17 22 22 H 1.09004 * 110.83143 * 56.29903 * 21 19 18 23 23 C 1.54703 * 110.93912 * 292.55767 * 21 19 18 24 24 O 1.43777 * 102.78184 * 216.61060 * 23 21 19 25 25 C 1.36137 * 109.20195 * 27.88931 * 24 23 21 26 26 C 1.39287 * 129.89893 * 161.19884 * 25 24 23 27 27 C 1.37931 * 120.23537 * 179.33333 * 26 25 24 28 28 C 1.38286 * 120.35378 * 359.44491 * 27 26 25 29 29 C 1.38354 * 119.76678 * 0.73941 * 28 27 26 30 30 C 1.37750 * 119.97444 * 359.72238 * 29 28 27 31 31 H 0.96995 * 120.00414 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36688 * 322.99969 * 10 9 7 33 33 H 1.09001 * 110.36746 * 85.21544 * 10 9 7 34 34 H 1.09002 * 111.00322 * 81.06108 * 11 10 9 35 35 H 1.08999 * 111.00204 * 204.87891 * 11 10 9 36 36 H 1.08997 * 110.69936 * 277.05108 * 12 11 10 37 37 H 1.09004 * 110.84939 * 153.69928 * 12 11 10 38 38 H 1.09004 * 109.47039 * 54.65209 * 15 13 9 39 39 H 1.08997 * 109.47046 * 294.65029 * 15 13 9 40 40 H 1.08990 * 109.47327 * 65.06652 * 16 15 13 41 41 H 1.09004 * 109.47097 * 305.06431 * 16 15 13 42 42 H 1.09000 * 109.47359 * 59.99340 * 17 16 15 43 43 H 1.09007 * 109.47018 * 300.00074 * 17 16 15 44 44 H 0.96996 * 119.99835 * 0.02562 * 18 17 16 45 45 H 1.08999 * 110.75187 * 334.93600 * 23 21 19 46 46 H 1.09003 * 110.75366 * 98.28612 * 23 21 19 47 47 H 1.07992 * 119.87970 * 359.05415 * 26 25 24 48 48 H 1.07998 * 119.82291 * 179.72273 * 27 26 25 49 49 H 1.07995 * 120.12212 * 180.44048 * 28 27 26 50 50 H 1.07998 * 120.01175 * 179.70834 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 -0.1092 -2.5515 0.2979 11 6 -0.2508 -4.0182 0.7760 12 6 0.7685 -4.7479 -0.1426 13 6 1.9001 -3.7092 -0.2917 14 1 2.7012 -3.9300 0.4135 15 6 2.4442 -3.7343 -1.7215 16 6 3.1571 -5.0645 -1.9726 17 6 3.8096 -5.0402 -3.3563 18 7 4.4927 -6.3137 -3.5965 19 6 5.1421 -6.5213 -4.7592 20 8 5.1612 -5.6536 -5.6064 21 6 5.8443 -7.8315 -5.0066 22 1 5.1533 -8.6678 -4.9004 23 6 7.0593 -7.9943 -4.0629 24 8 8.0228 -8.6603 -4.8969 25 6 7.7922 -8.3315 -6.1977 26 6 8.6309 -8.4277 -7.3056 27 6 8.1815 -8.0446 -8.5522 28 6 6.8920 -7.5727 -8.7155 29 6 6.0539 -7.4704 -7.6195 30 6 6.5037 -7.8436 -6.3721 31 1 -0.4850 0.8400 0.0004 32 1 -0.4143 -1.8642 1.0869 33 1 -0.7035 -2.3845 -0.6005 34 1 0.0312 -4.1163 1.8243 35 1 -1.2627 -4.3874 0.6094 36 1 0.3218 -4.9732 -1.1110 37 1 1.1387 -5.6560 0.3333 38 1 3.1485 -2.9134 -1.8567 39 1 1.6197 -3.6253 -2.4260 40 1 2.4341 -5.8787 -1.9261 41 1 3.9235 -5.2152 -1.2123 42 1 4.5327 -4.2259 -3.4028 43 1 3.0433 -4.8894 -4.1168 44 1 4.4771 -7.0078 -2.9191 45 1 7.4327 -7.0216 -3.7426 46 1 6.8005 -8.6119 -3.2029 47 1 9.6379 -8.7993 -7.1875 48 1 8.8389 -8.1178 -9.4059 49 1 6.5418 -7.2805 -9.6944 50 1 5.0476 -7.0980 -7.7418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567267369.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:57 Heat of formation + Delta-G solvation = -25.593183 kcal Electronic energy + Delta-G solvation = -29187.059415 eV Core-core repulsion = 25179.840221 eV Total energy + Delta-G solvation = -4007.219194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.75688 -39.48240 -37.84504 -37.71059 -35.60879 -33.38960 -32.83354 -32.11029 -30.38148 -29.80864 -29.34083 -27.99458 -25.14289 -24.49428 -23.82676 -22.81112 -22.24147 -21.56913 -20.42745 -20.10485 -19.16707 -17.86635 -17.67050 -17.04337 -16.74098 -16.12885 -15.82338 -15.69620 -15.43115 -15.05910 -14.65786 -14.37993 -14.15650 -13.89113 -13.75477 -13.52633 -13.45371 -13.03794 -12.92414 -12.48742 -12.27311 -12.06288 -12.01704 -11.92249 -11.71407 -11.48085 -11.31542 -11.11596 -11.03515 -10.81479 -10.73713 -10.58713 -10.14001 -10.06865 -9.99980 -9.77247 -9.62582 -9.61589 -9.24048 -9.17776 -8.56238 -8.49146 -6.76282 -5.73043 -3.08181 0.96549 1.11255 2.32001 2.79369 2.93862 3.40476 3.45373 3.45919 3.48914 3.81964 4.11637 4.41026 4.49784 4.51879 4.70336 4.79596 4.92965 4.97611 5.08633 5.11919 5.12515 5.15158 5.34431 5.35404 5.44492 5.58363 5.59094 5.70027 5.72013 5.83897 5.92745 5.99714 6.00700 6.08017 6.12185 6.21534 6.24061 6.27328 6.31667 6.33677 6.41365 6.56208 6.69282 6.71770 6.83252 6.94787 7.16291 7.25979 7.55884 7.64211 7.81672 7.96785 8.31199 9.22074 9.83717 10.52889 11.39169 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016490 B = 0.001894 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.567556 B =14780.579666 C =15599.391260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.073 0.927 9 N -0.596 5.596 10 C 0.172 3.828 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.117 3.883 18 N -0.726 5.726 19 C 0.519 3.481 20 O -0.523 6.523 21 C -0.102 4.102 22 H 0.122 0.878 23 C 0.065 3.935 24 O -0.300 6.300 25 C 0.105 3.895 26 C -0.142 4.142 27 C -0.082 4.082 28 C -0.151 4.151 29 C -0.040 4.040 30 C -0.154 4.154 31 H 0.253 0.747 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.400 0.600 45 H 0.083 0.917 46 H 0.117 0.883 47 H 0.128 0.872 48 H 0.131 0.869 49 H 0.129 0.871 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.896 -21.351 -10.917 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.091 0.909 9 N -0.320 5.320 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.165 4.165 17 C -0.005 4.005 18 N -0.378 5.378 19 C 0.304 3.696 20 O -0.399 6.399 21 C -0.123 4.123 22 H 0.140 0.860 23 C -0.011 4.011 24 O -0.214 6.214 25 C 0.060 3.940 26 C -0.161 4.161 27 C -0.100 4.100 28 C -0.169 4.169 29 C -0.058 4.058 30 C -0.155 4.155 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.234 0.766 45 H 0.101 0.899 46 H 0.135 0.865 47 H 0.146 0.854 48 H 0.149 0.851 49 H 0.147 0.853 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.996 -20.573 -11.402 26.404 hybrid contribution 0.205 0.708 0.336 0.810 sum 12.201 -19.866 -11.066 25.806 Atomic orbital electron populations 1.69922 1.04971 1.25226 1.56385 1.24892 0.95661 0.97753 1.01905 0.86259 0.78573 0.83339 0.77953 1.21088 1.21623 1.21164 1.18908 0.90270 0.82359 1.44018 0.90890 1.44530 1.05990 1.01205 1.80294 1.21409 0.85173 0.90048 0.98613 1.23055 0.97452 0.99779 0.98606 1.22632 0.97173 0.97077 0.99346 1.20917 0.93891 0.87010 0.92691 0.95215 1.22034 0.99829 0.94584 0.99792 1.21835 0.99748 1.00333 0.94605 1.21552 0.96366 0.84557 0.98067 1.46118 1.54427 1.19076 1.18165 1.20047 0.79035 0.88342 0.82222 1.90747 1.59937 1.44873 1.44294 1.21569 0.98616 0.98198 0.93952 0.86038 1.23804 0.85181 0.98974 0.93104 1.86850 1.54759 1.65581 1.14212 1.19544 0.93116 0.96079 0.85257 1.20223 0.99495 1.06090 0.90286 1.20902 0.95961 0.97020 0.96150 1.21083 0.94300 1.02770 0.98761 1.20370 1.00260 0.94948 0.90268 1.20183 0.94200 1.06768 0.94381 0.93678 0.91244 0.95864 0.92519 0.92570 0.92080 0.92643 0.91609 0.92253 0.91690 0.91712 0.91278 0.91346 0.76647 0.89883 0.86547 0.85389 0.85098 0.85345 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.56 55.49 0.59 -26.26 16 2 C -0.01 -0.15 5.47 -17.43 -0.10 -0.25 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.20 9.71 -15.06 -0.15 -6.34 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.52 16 9 N -0.60 -14.77 3.13 -162.57 -0.51 -15.28 16 10 C 0.17 4.14 5.42 -2.53 -0.01 4.12 16 11 C -0.15 -2.78 7.09 -24.45 -0.17 -2.95 16 12 C -0.12 -2.05 5.73 -24.76 -0.14 -2.19 16 13 C 0.16 3.15 3.15 -66.95 -0.21 2.94 16 14 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 15 C -0.12 -2.09 4.72 -26.73 -0.13 -2.22 16 16 C -0.13 -1.54 5.10 -26.73 -0.14 -1.67 16 17 C 0.12 1.43 5.67 -4.04 -0.02 1.40 16 18 N -0.73 -6.93 5.56 -60.29 -0.33 -7.26 16 19 C 0.52 5.88 7.06 -10.99 -0.08 5.80 16 20 O -0.52 -8.18 15.18 5.56 0.08 -8.10 16 21 C -0.10 -0.90 3.52 -91.57 -0.32 -1.22 16 22 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 23 C 0.06 0.49 7.54 38.05 0.29 0.78 16 24 O -0.30 -3.06 11.11 -20.18 -0.22 -3.29 16 25 C 0.10 1.13 7.03 -38.95 -0.27 0.86 16 26 C -0.14 -1.32 10.06 -39.30 -0.40 -1.71 16 27 C -0.08 -0.67 10.02 -39.68 -0.40 -1.07 16 28 C -0.15 -1.35 10.07 -39.52 -0.40 -1.75 16 29 C -0.04 -0.43 9.07 -39.72 -0.36 -0.79 16 30 C -0.15 -1.68 5.39 -104.10 -0.56 -2.24 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.07 1.86 6.90 -51.93 -0.36 1.51 16 33 H 0.02 0.61 8.06 -51.93 -0.42 0.19 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.96 7.76 -51.93 -0.40 0.56 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.26 7.84 -51.93 -0.41 0.86 16 39 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 40 H 0.06 0.70 7.64 -51.93 -0.40 0.31 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 44 H 0.40 2.51 8.47 -40.82 -0.35 2.16 16 45 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 46 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 48 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 49 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 50 H 0.13 1.36 7.82 -52.49 -0.41 0.95 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -33.59 402.25 -11.11 -44.70 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.19 Total: 0.89 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -3.57 Total: -8.50 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.26 Total: -48.80 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.14 Total: -11.39 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.59 -11.11 -44.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567267369.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.105 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds