Wall clock time and date at job start Wed Apr 1 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99748 * 2 1 4 4 H 1.48498 * 109.47354 * 240.00312 * 3 2 1 5 5 H 1.48500 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47062 * 119.99996 * 3 2 1 7 7 C 1.38807 * 120.00588 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00702 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.64669 * 345.71484 * 9 7 2 11 11 C 1.54915 * 104.83009 * 204.16267 * 10 9 7 12 12 C 1.55403 * 101.66470 * 323.07474 * 11 10 9 13 13 C 1.47018 * 125.64752 * 165.75456 * 9 7 2 14 14 H 1.08998 * 109.88565 * 59.33329 * 13 9 7 15 15 C 1.53003 * 109.88353 * 298.32239 * 13 9 7 16 16 C 1.53000 * 109.47171 * 174.65167 * 15 13 9 17 17 C 1.52999 * 109.47199 * 185.07232 * 16 15 13 18 18 N 1.46499 * 109.47317 * 179.97438 * 17 16 15 19 19 C 1.34778 * 120.00034 * 179.97438 * 18 17 16 20 20 O 1.21280 * 119.99889 * 0.02562 * 19 18 17 21 21 C 1.50694 * 119.99977 * 180.02562 * 19 18 17 22 22 H 1.09004 * 110.83143 * 56.29903 * 21 19 18 23 23 C 1.54703 * 110.93912 * 292.55767 * 21 19 18 24 24 O 1.43777 * 102.78184 * 216.61060 * 23 21 19 25 25 C 1.36137 * 109.20195 * 27.88931 * 24 23 21 26 26 C 1.39287 * 129.89893 * 161.19884 * 25 24 23 27 27 C 1.37931 * 120.23537 * 179.33333 * 26 25 24 28 28 C 1.38286 * 120.35378 * 359.44491 * 27 26 25 29 29 C 1.38354 * 119.76678 * 0.73941 * 28 27 26 30 30 C 1.37750 * 119.97444 * 359.72238 * 29 28 27 31 31 H 0.96995 * 120.00414 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36688 * 322.99969 * 10 9 7 33 33 H 1.09001 * 110.36746 * 85.21544 * 10 9 7 34 34 H 1.09002 * 111.00322 * 81.06108 * 11 10 9 35 35 H 1.08999 * 111.00204 * 204.87891 * 11 10 9 36 36 H 1.08997 * 110.69936 * 277.05108 * 12 11 10 37 37 H 1.09004 * 110.84939 * 153.69928 * 12 11 10 38 38 H 1.09004 * 109.47039 * 54.65209 * 15 13 9 39 39 H 1.08997 * 109.47046 * 294.65029 * 15 13 9 40 40 H 1.08990 * 109.47327 * 65.06652 * 16 15 13 41 41 H 1.09004 * 109.47097 * 305.06431 * 16 15 13 42 42 H 1.09000 * 109.47359 * 59.99340 * 17 16 15 43 43 H 1.09007 * 109.47018 * 300.00074 * 17 16 15 44 44 H 0.96996 * 119.99835 * 0.02562 * 18 17 16 45 45 H 1.08999 * 110.75187 * 334.93600 * 23 21 19 46 46 H 1.09003 * 110.75366 * 98.28612 * 23 21 19 47 47 H 1.07992 * 119.87970 * 359.05415 * 26 25 24 48 48 H 1.07998 * 119.82291 * 179.72273 * 27 26 25 49 49 H 1.07995 * 120.12212 * 180.44048 * 28 27 26 50 50 H 1.07998 * 120.01175 * 179.70834 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 -0.1092 -2.5515 0.2979 11 6 -0.2508 -4.0182 0.7760 12 6 0.7685 -4.7479 -0.1426 13 6 1.9001 -3.7092 -0.2917 14 1 2.7012 -3.9300 0.4135 15 6 2.4442 -3.7343 -1.7215 16 6 3.1571 -5.0645 -1.9726 17 6 3.8096 -5.0402 -3.3563 18 7 4.4927 -6.3137 -3.5965 19 6 5.1421 -6.5213 -4.7592 20 8 5.1612 -5.6536 -5.6064 21 6 5.8443 -7.8315 -5.0066 22 1 5.1533 -8.6678 -4.9004 23 6 7.0593 -7.9943 -4.0629 24 8 8.0228 -8.6603 -4.8969 25 6 7.7922 -8.3315 -6.1977 26 6 8.6309 -8.4277 -7.3056 27 6 8.1815 -8.0446 -8.5522 28 6 6.8920 -7.5727 -8.7155 29 6 6.0539 -7.4704 -7.6195 30 6 6.5037 -7.8436 -6.3721 31 1 -0.4850 0.8400 0.0004 32 1 -0.4143 -1.8642 1.0869 33 1 -0.7035 -2.3845 -0.6005 34 1 0.0312 -4.1163 1.8243 35 1 -1.2627 -4.3874 0.6094 36 1 0.3218 -4.9732 -1.1110 37 1 1.1387 -5.6560 0.3333 38 1 3.1485 -2.9134 -1.8567 39 1 1.6197 -3.6253 -2.4260 40 1 2.4341 -5.8787 -1.9261 41 1 3.9235 -5.2152 -1.2123 42 1 4.5327 -4.2259 -3.4028 43 1 3.0433 -4.8894 -4.1168 44 1 4.4771 -7.0078 -2.9191 45 1 7.4327 -7.0216 -3.7426 46 1 6.8005 -8.6119 -3.2029 47 1 9.6379 -8.7993 -7.1875 48 1 8.8389 -8.1178 -9.4059 49 1 6.5418 -7.2805 -9.6944 50 1 5.0476 -7.0980 -7.7418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567267369.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:55 Heat of formation + Delta-G solvation = -46.517618 kcal Electronic energy + Delta-G solvation = -29187.966767 eV Core-core repulsion = 25179.840221 eV Total energy + Delta-G solvation = -4008.126546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.46276 -40.39561 -39.43536 -38.37617 -36.72147 -34.72159 -34.09845 -33.40752 -31.25894 -31.06744 -30.50884 -29.27737 -26.67249 -25.93674 -24.79551 -23.62018 -23.00946 -22.64995 -21.86298 -21.33483 -20.67824 -18.73399 -18.54501 -18.41627 -17.72992 -17.01199 -16.93556 -16.68213 -16.52483 -16.26145 -15.97251 -15.71326 -15.54025 -15.02853 -14.55033 -14.39490 -14.35356 -14.14693 -13.90918 -13.69032 -13.66632 -13.51731 -13.21992 -13.00870 -12.99202 -12.73406 -12.68274 -12.60299 -12.24218 -12.04273 -11.94097 -11.83044 -11.79198 -11.66615 -11.53626 -11.30856 -11.16716 -10.97866 -10.64498 -10.17714 -9.88721 -9.19108 -8.77225 -7.85260 -5.20702 0.27290 0.39313 1.43476 1.45632 1.46148 1.52029 2.02002 2.23627 2.49549 2.78581 3.13594 3.32983 3.48664 3.68529 3.75985 3.88423 3.95540 4.01589 4.05571 4.17069 4.20189 4.26740 4.35901 4.43738 4.44849 4.45888 4.49643 4.56396 4.63244 4.66853 4.79761 4.83173 4.86500 4.99551 5.03780 5.05530 5.14547 5.24802 5.31542 5.33801 5.38716 5.43076 5.50640 5.53085 5.54279 5.60543 5.68719 5.71907 5.80841 6.15550 6.28201 6.48656 7.13182 7.16003 7.83384 8.50247 9.25980 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016490 B = 0.001894 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.567556 B =14780.579666 C =15599.391260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.230 4.230 8 H 0.076 0.924 9 N -0.619 5.619 10 C 0.174 3.826 11 C -0.138 4.138 12 C -0.111 4.111 13 C 0.151 3.849 14 H 0.037 0.963 15 C -0.113 4.113 16 C -0.107 4.107 17 C 0.125 3.875 18 N -0.708 5.708 19 C 0.519 3.481 20 O -0.573 6.573 21 C -0.094 4.094 22 H 0.151 0.849 23 C 0.065 3.935 24 O -0.311 6.311 25 C 0.085 3.915 26 C -0.151 4.151 27 C -0.081 4.081 28 C -0.157 4.157 29 C -0.063 4.063 30 C -0.176 4.176 31 H 0.245 0.755 32 H 0.029 0.971 33 H -0.010 1.010 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.034 0.966 39 H 0.040 0.960 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.420 0.580 45 H 0.075 0.925 46 H 0.158 0.842 47 H 0.145 0.855 48 H 0.162 0.838 49 H 0.147 0.853 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.381 -24.522 -10.539 29.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.360 4.360 8 H 0.093 0.907 9 N -0.344 5.344 10 C 0.049 3.951 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.153 4.153 16 C -0.145 4.145 17 C 0.001 3.999 18 N -0.361 5.361 19 C 0.305 3.695 20 O -0.452 6.452 21 C -0.115 4.115 22 H 0.168 0.832 23 C -0.010 4.010 24 O -0.225 6.225 25 C 0.040 3.960 26 C -0.170 4.170 27 C -0.098 4.098 28 C -0.175 4.175 29 C -0.081 4.081 30 C -0.177 4.177 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.008 0.992 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.258 0.742 45 H 0.093 0.907 46 H 0.175 0.825 47 H 0.162 0.838 48 H 0.179 0.821 49 H 0.165 0.835 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.507 -23.812 -10.991 29.500 hybrid contribution -0.224 1.680 0.191 1.706 sum 13.283 -22.131 -10.800 27.980 Atomic orbital electron populations 1.70139 1.06278 1.25188 1.58242 1.25668 0.96501 1.00953 1.02869 0.85279 0.77279 0.79414 0.78166 1.20668 1.22182 1.20190 1.19249 0.90668 0.83778 1.42297 0.90661 1.44851 1.06380 1.02512 1.80624 1.21211 0.84683 0.93243 0.96002 1.22924 0.99734 0.95648 0.99297 1.22632 0.95098 0.97298 0.99788 1.21230 0.95204 0.85361 0.93669 0.94561 1.21829 0.98860 0.96660 0.97978 1.21630 1.00314 0.97869 0.94707 1.21261 0.95574 0.85249 0.97819 1.45866 1.53343 1.18573 1.18295 1.20522 0.78491 0.88718 0.81748 1.90730 1.61768 1.46709 1.46004 1.21608 0.99311 0.97221 0.93363 0.83204 1.24052 0.83908 0.99523 0.93514 1.86828 1.55605 1.65916 1.14159 1.19823 0.93427 0.96806 0.85912 1.20599 1.00212 1.05772 0.90378 1.21274 0.95947 0.95777 0.96828 1.21393 0.94600 1.02327 0.99158 1.20499 1.00358 0.96024 0.91234 1.20482 0.94890 1.07120 0.95217 0.94536 0.95248 0.99201 0.91790 0.90159 0.91082 0.88290 0.94673 0.94121 0.88925 0.89818 0.93482 0.92935 0.74187 0.90721 0.82466 0.83762 0.82086 0.83545 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.02 10.56 21.65 0.23 -57.79 16 2 C -0.07 -3.86 5.47 84.86 0.46 -3.39 16 3 Si 0.97 46.63 29.55 68.60 2.03 48.65 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.23 -12.87 9.71 84.03 0.82 -12.06 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.62 -31.12 3.13 -668.26 -2.09 -33.21 16 10 C 0.17 8.55 5.42 86.86 0.47 9.02 16 11 C -0.14 -4.80 7.09 32.08 0.23 -4.58 16 12 C -0.11 -3.24 5.73 31.87 0.18 -3.06 16 13 C 0.15 5.63 3.15 45.34 0.14 5.78 16 14 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 15 C -0.11 -3.80 4.72 30.60 0.14 -3.65 16 16 C -0.11 -2.28 5.10 30.59 0.16 -2.13 16 17 C 0.12 2.90 5.67 86.38 0.49 3.39 16 18 N -0.71 -11.90 5.56 -463.06 -2.57 -14.47 16 19 C 0.52 11.23 7.06 87.65 0.62 11.85 16 20 O -0.57 -18.31 15.18 -3.03 -0.05 -18.36 16 21 C -0.09 -1.48 3.52 -11.41 -0.04 -1.52 16 22 H 0.15 1.46 8.14 -2.38 -0.02 1.44 16 23 C 0.06 0.82 7.54 72.56 0.55 1.37 16 24 O -0.31 -5.82 11.11 -95.11 -1.06 -6.87 16 25 C 0.09 1.75 7.03 22.68 0.16 1.91 16 26 C -0.15 -2.60 10.06 22.45 0.23 -2.38 16 27 C -0.08 -1.19 10.02 22.21 0.22 -0.97 16 28 C -0.16 -2.70 10.07 22.31 0.22 -2.48 16 29 C -0.06 -1.36 9.07 22.18 0.20 -1.16 16 30 C -0.18 -3.74 5.39 -19.52 -0.11 -3.84 16 31 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.03 1.64 6.90 -2.39 -0.02 1.63 16 33 H -0.01 -0.55 8.06 -2.39 -0.02 -0.57 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.07 1.97 7.76 -2.39 -0.02 1.96 16 37 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.03 1.37 7.84 -2.39 -0.02 1.35 16 39 H 0.04 1.49 8.02 -2.39 -0.02 1.47 16 40 H 0.09 1.55 7.64 -2.39 -0.02 1.53 16 41 H 0.08 1.54 8.14 -2.38 -0.02 1.53 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.42 3.58 8.47 -92.71 -0.79 2.79 16 45 H 0.07 1.06 7.91 -2.39 -0.02 1.04 16 46 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 48 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 49 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 50 H 0.12 2.64 7.82 -2.91 -0.02 2.62 16 Total: -1.00 -78.88 402.25 1.78 -77.09 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.14 Total: 12.85 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.15 Total: -7.89 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -4.43 Total: -105.47 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -1.10 Total: -25.23 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -78.88 1.78 -77.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567267369.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.575 kcal (2) G-P(sol) polarization free energy of solvation -78.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds