Wall clock time and date at job start Wed Apr 1 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48502 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46885 * 299.99252 * 3 2 1 6 6 H 1.48494 * 109.47228 * 59.99627 * 3 2 1 7 7 C 1.38814 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00393 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64616 * 14.80633 * 9 7 2 11 11 C 1.54906 * 104.83140 * 155.83442 * 10 9 7 12 12 C 1.55153 * 101.58313 * 37.00575 * 11 10 9 13 13 C 1.47017 * 125.64731 * 194.75870 * 9 7 2 14 14 H 1.09005 * 109.88761 * 300.66518 * 13 9 7 15 15 C 1.52999 * 109.88439 * 61.68104 * 13 9 7 16 16 C 1.53004 * 109.47155 * 185.22913 * 15 13 9 17 17 C 1.53000 * 109.47044 * 174.94978 * 16 15 13 18 18 N 1.46498 * 109.47424 * 179.97438 * 17 16 15 19 19 C 1.34770 * 120.00185 * 179.72404 * 18 17 16 20 20 O 1.21282 * 120.00419 * 359.97438 * 19 18 17 21 21 C 1.50705 * 119.99813 * 180.02562 * 19 18 17 22 22 H 1.08996 * 110.83591 * 62.26935 * 21 19 18 23 23 C 1.54706 * 110.94501 * 298.54215 * 21 19 18 24 24 O 1.43752 * 102.79701 * 216.48545 * 23 21 19 25 25 C 1.36133 * 109.29076 * 27.55144 * 24 23 21 26 26 C 1.39294 * 129.88390 * 161.46312 * 25 24 23 27 27 C 1.37931 * 120.24315 * 179.57528 * 26 25 24 28 28 C 1.38289 * 120.35247 * 0.02562 * 27 26 25 29 29 C 1.38349 * 119.76407 * 0.16618 * 28 27 26 30 30 C 1.37739 * 119.97613 * 359.97438 * 29 28 27 31 31 H 0.96994 * 119.99842 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.36436 * 274.66756 * 10 9 7 33 33 H 1.08991 * 110.36787 * 36.88212 * 10 9 7 34 34 H 1.09000 * 111.00775 * 155.08123 * 11 10 9 35 35 H 1.09000 * 111.00857 * 278.89224 * 11 10 9 36 36 H 1.09003 * 110.72340 * 206.13123 * 12 11 10 37 37 H 1.09008 * 110.72280 * 82.86293 * 12 11 10 38 38 H 1.08998 * 109.47030 * 65.22605 * 15 13 9 39 39 H 1.09000 * 109.46948 * 305.22432 * 15 13 9 40 40 H 1.08991 * 109.47189 * 54.94568 * 16 15 13 41 41 H 1.09006 * 109.46653 * 294.94477 * 16 15 13 42 42 H 1.09004 * 109.47172 * 59.99669 * 17 16 15 43 43 H 1.09000 * 109.47041 * 300.00016 * 17 16 15 44 44 H 0.97003 * 119.99441 * 0.02562 * 18 17 16 45 45 H 1.09004 * 110.74527 * 334.81851 * 23 21 19 46 46 H 1.09004 * 110.74563 * 98.15317 * 23 21 19 47 47 H 1.07998 * 119.87822 * 359.55999 * 26 25 24 48 48 H 1.07995 * 119.81952 * 179.97438 * 27 26 25 49 49 H 1.07999 * 120.11405 * 180.14603 * 28 27 26 50 50 H 1.08003 * 120.01156 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1070 -2.5531 -0.3061 11 6 -0.2450 -4.0223 -0.7774 12 6 0.7642 -4.7443 0.1540 13 6 1.8974 -3.7077 0.3054 14 1 2.7041 -3.9324 -0.3925 15 6 2.4304 -3.7252 1.7395 16 6 3.1386 -5.0553 2.0042 17 6 3.7799 -5.0241 3.3930 18 7 4.4576 -6.2979 3.6468 19 6 5.1019 -6.4976 4.8135 20 8 5.1213 -5.6227 5.6532 21 6 5.7995 -7.8078 5.0742 22 1 6.6008 -7.9706 4.3535 23 6 4.7934 -8.9830 5.0575 24 8 5.2998 -9.8503 6.0859 25 6 5.9739 -9.1092 7.0077 26 6 6.3314 -9.4223 8.3170 27 6 7.0307 -8.5127 9.0826 28 6 7.3827 -7.2824 8.5583 29 6 7.0279 -6.9621 7.2600 30 6 6.3271 -7.8679 6.4948 31 1 -0.4849 0.8400 -0.0004 32 1 -0.7082 -2.3832 0.5872 33 1 -0.4063 -1.8686 -1.0998 34 1 -1.2581 -4.3908 -0.6162 35 1 0.0444 -4.1260 -1.8232 36 1 1.1357 -5.6564 -0.3131 37 1 0.3094 -4.9623 1.1203 38 1 1.6006 -3.6102 2.4368 39 1 3.1353 -2.9050 1.8751 40 1 3.9106 -5.2121 1.2509 41 1 2.4141 -5.8684 1.9567 42 1 3.0078 -4.8673 4.1463 43 1 4.5043 -4.2110 3.4405 44 1 4.4461 -6.9959 2.9733 45 1 3.7901 -8.6358 5.3044 46 1 4.8021 -9.4850 4.0899 47 1 6.0599 -10.3806 8.7344 48 1 7.3041 -8.7623 10.0971 49 1 7.9323 -6.5740 9.1604 50 1 7.3004 -6.0023 6.8466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567267370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:00 Heat of formation + Delta-G solvation = -26.061098 kcal Electronic energy + Delta-G solvation = -29200.376343 eV Core-core repulsion = 25193.136858 eV Total energy + Delta-G solvation = -4007.239485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.76165 -39.48701 -37.85700 -37.71583 -35.61404 -33.40230 -32.83267 -32.12073 -30.38245 -29.81508 -29.34602 -27.98261 -25.13588 -24.50369 -23.84220 -22.81451 -22.23564 -21.56910 -20.43634 -20.10812 -19.16907 -17.87547 -17.66588 -17.04592 -16.74348 -16.09798 -15.86277 -15.70386 -15.40341 -15.09802 -14.67521 -14.33832 -14.20011 -13.83504 -13.76421 -13.61979 -13.43579 -13.00961 -12.86791 -12.55694 -12.26852 -12.06709 -12.00920 -11.92225 -11.72577 -11.49076 -11.31396 -11.11073 -11.03699 -10.83285 -10.74781 -10.59132 -10.12005 -10.04378 -9.99381 -9.77718 -9.63284 -9.62295 -9.25045 -9.17268 -8.57122 -8.49251 -6.76126 -5.73990 -3.09013 0.96230 1.11375 2.32552 2.78669 2.93416 3.38998 3.45260 3.47197 3.48586 3.80207 4.11478 4.40134 4.49232 4.51618 4.70439 4.79894 4.91963 4.97440 5.08627 5.12009 5.12161 5.15300 5.34330 5.35926 5.44086 5.58162 5.59522 5.70195 5.72132 5.83565 5.92542 5.99553 6.00763 6.07886 6.12637 6.21851 6.24119 6.27697 6.31560 6.33709 6.41348 6.55989 6.69226 6.71782 6.83105 6.94742 7.16176 7.25588 7.55447 7.64563 7.81547 7.96384 8.30605 9.21555 9.83155 10.52476 11.38526 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.001914 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.876529 B =14628.113502 C =15914.646798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.074 0.926 9 N -0.596 5.596 10 C 0.172 3.828 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.117 3.883 18 N -0.726 5.726 19 C 0.520 3.480 20 O -0.524 6.524 21 C -0.102 4.102 22 H 0.123 0.877 23 C 0.064 3.936 24 O -0.300 6.300 25 C 0.105 3.895 26 C -0.143 4.143 27 C -0.082 4.082 28 C -0.152 4.152 29 C -0.039 4.039 30 C -0.156 4.156 31 H 0.252 0.748 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.399 0.601 45 H 0.083 0.917 46 H 0.116 0.884 47 H 0.128 0.872 48 H 0.131 0.869 49 H 0.129 0.871 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.493 -21.501 11.230 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.092 0.908 9 N -0.320 5.320 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.165 4.165 17 C -0.005 4.005 18 N -0.378 5.378 19 C 0.304 3.696 20 O -0.399 6.399 21 C -0.123 4.123 22 H 0.141 0.859 23 C -0.012 4.012 24 O -0.214 6.214 25 C 0.060 3.940 26 C -0.162 4.162 27 C -0.100 4.100 28 C -0.170 4.170 29 C -0.058 4.058 30 C -0.157 4.157 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.233 0.767 45 H 0.101 0.899 46 H 0.134 0.866 47 H 0.146 0.854 48 H 0.149 0.851 49 H 0.147 0.853 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.383 -20.830 11.804 26.510 hybrid contribution 0.376 0.794 -0.417 0.972 sum 11.759 -20.036 11.387 25.873 Atomic orbital electron populations 1.69947 1.04981 1.24998 1.56504 1.24908 0.95667 0.97779 1.01922 0.86106 0.78880 0.83931 0.77240 1.20454 1.21790 1.21711 1.19001 0.90322 0.82333 1.43783 0.90789 1.44549 1.06299 1.01365 1.79833 1.21402 0.85237 0.89999 0.98603 1.23008 0.97527 0.99824 0.98550 1.22589 0.97191 0.97105 0.99312 1.20926 0.93921 0.87036 0.92636 0.95187 1.22032 0.99875 0.94590 0.99732 1.21837 0.99810 1.00340 0.94542 1.21552 0.96483 0.84563 0.97941 1.46118 1.54857 1.18879 1.17947 1.20043 0.79057 0.88415 0.82058 1.90742 1.59716 1.44565 1.44878 1.21577 0.99222 0.94559 0.96972 0.85902 1.23820 0.96850 0.88498 0.92007 1.86832 1.68338 1.32517 1.33724 1.19548 0.93750 0.90204 0.90488 1.20222 1.04022 1.01659 0.90260 1.20906 0.96478 0.93215 0.99416 1.21095 1.02891 0.97376 0.95623 1.20407 0.94182 0.97997 0.93169 1.20183 1.04773 0.96235 0.94492 0.93780 0.95841 0.91315 0.92569 0.92501 0.92668 0.92064 0.92244 0.91605 0.91707 0.91693 0.91365 0.91241 0.76665 0.89874 0.86579 0.85399 0.85104 0.85342 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 10.58 55.49 0.59 -26.25 16 2 C -0.01 -0.17 5.47 -17.43 -0.10 -0.26 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.23 -6.16 9.71 -15.06 -0.15 -6.30 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.76 3.13 -162.58 -0.51 -15.27 16 10 C 0.17 4.14 5.41 -2.53 -0.01 4.12 16 11 C -0.15 -2.78 7.08 -24.59 -0.17 -2.96 16 12 C -0.12 -2.05 5.71 -24.90 -0.14 -2.19 16 13 C 0.16 3.15 3.16 -66.96 -0.21 2.94 16 14 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 15 C -0.12 -2.09 4.72 -26.73 -0.13 -2.21 16 16 C -0.13 -1.53 5.10 -26.73 -0.14 -1.67 16 17 C 0.12 1.42 5.67 -4.04 -0.02 1.40 16 18 N -0.73 -6.92 5.50 -60.29 -0.33 -7.25 16 19 C 0.52 5.88 7.08 -10.99 -0.08 5.80 16 20 O -0.52 -8.14 15.00 5.56 0.08 -8.06 16 21 C -0.10 -0.89 3.52 -91.55 -0.32 -1.22 16 22 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 23 C 0.06 0.47 7.50 38.05 0.29 0.75 16 24 O -0.30 -3.02 11.10 -20.16 -0.22 -3.24 16 25 C 0.11 1.12 7.04 -38.95 -0.27 0.84 16 26 C -0.14 -1.31 10.06 -39.30 -0.40 -1.71 16 27 C -0.08 -0.67 10.02 -39.67 -0.40 -1.06 16 28 C -0.15 -1.36 10.07 -39.52 -0.40 -1.76 16 29 C -0.04 -0.43 9.05 -39.72 -0.36 -0.78 16 30 C -0.16 -1.69 5.45 -104.10 -0.57 -2.26 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.02 0.61 8.06 -51.92 -0.42 0.19 16 33 H 0.07 1.84 6.93 -51.93 -0.36 1.48 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.97 7.76 -51.92 -0.40 0.56 16 38 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 39 H 0.07 1.26 7.84 -51.93 -0.41 0.85 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.40 2.50 8.47 -40.82 -0.35 2.16 16 45 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 46 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 49 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 50 H 0.13 1.41 7.64 -52.48 -0.40 1.01 16 LS Contribution 401.89 15.07 6.06 6.06 Total: -1.00 -33.57 401.89 -11.11 -44.69 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.18 Total: 0.83 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.57 Total: -8.53 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.25 Total: -48.77 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.14 Total: -11.30 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.57 -11.11 -44.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567267370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.626 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds