Wall clock time and date at job start Wed Apr 1 2020 02:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00297 * 2 1 4 4 H 1.48492 * 109.47104 * 273.67569 * 3 2 1 5 5 H 1.48501 * 109.46933 * 33.67581 * 3 2 1 6 6 H 1.48499 * 109.47233 * 153.67187 * 3 2 1 7 7 C 1.38810 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00080 * 350.92504 * 7 2 1 9 9 N 1.36940 * 120.00278 * 170.92670 * 7 2 1 10 10 C 1.47422 * 125.64460 * 316.93577 * 9 7 2 11 11 C 1.54914 * 104.83099 * 155.91413 * 10 9 7 12 12 C 1.55157 * 101.57826 * 37.00970 * 11 10 9 13 13 C 1.47023 * 125.64909 * 136.98487 * 9 7 2 14 14 H 1.08994 * 110.01143 * 300.50433 * 13 9 7 15 15 C 1.53002 * 109.87909 * 61.60191 * 13 9 7 16 16 C 1.53005 * 109.46859 * 284.56431 * 15 13 9 17 17 C 1.53002 * 109.46939 * 185.83800 * 16 15 13 18 18 N 1.46496 * 109.47012 * 180.02562 * 17 16 15 19 19 C 1.34775 * 120.00160 * 179.97438 * 18 17 16 20 20 O 1.21285 * 119.99851 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00239 * 179.72366 * 19 18 17 22 22 H 1.08989 * 110.82984 * 300.69749 * 21 19 18 23 23 C 1.54705 * 110.93680 * 64.41132 * 21 19 18 24 24 O 1.43839 * 102.75805 * 143.41791 * 23 21 19 25 25 C 1.36133 * 109.25649 * 332.30676 * 24 23 21 26 26 C 1.39288 * 129.87933 * 198.36644 * 25 24 23 27 27 C 1.37930 * 120.23864 * 180.96312 * 26 25 24 28 28 C 1.38292 * 120.34894 * 0.04979 * 27 26 25 29 29 C 1.38346 * 119.76978 * 359.79164 * 28 27 26 30 30 C 1.37743 * 119.97589 * 0.02562 * 29 28 27 31 31 H 0.96996 * 119.99628 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.37094 * 37.07789 * 10 9 7 33 33 H 1.08998 * 110.36867 * 274.75142 * 10 9 7 34 34 H 1.08997 * 111.00684 * 278.94004 * 11 10 9 35 35 H 1.08997 * 111.03801 * 155.09355 * 11 10 9 36 36 H 1.09005 * 110.72036 * 206.13178 * 12 11 10 37 37 H 1.09000 * 110.72179 * 82.86712 * 12 11 10 38 38 H 1.09006 * 109.47027 * 164.57337 * 15 13 9 39 39 H 1.08991 * 109.47318 * 44.57205 * 15 13 9 40 40 H 1.09002 * 109.46895 * 65.84297 * 16 15 13 41 41 H 1.08999 * 109.47315 * 305.83926 * 16 15 13 42 42 H 1.08996 * 109.47042 * 60.00117 * 17 16 15 43 43 H 1.09008 * 109.47048 * 300.00043 * 17 16 15 44 44 H 0.97002 * 120.00202 * 359.97438 * 18 17 16 45 45 H 1.09006 * 110.74825 * 261.76542 * 23 21 19 46 46 H 1.08996 * 110.75009 * 25.12373 * 23 21 19 47 47 H 1.08002 * 119.87882 * 0.99246 * 26 25 24 48 48 H 1.08001 * 119.82881 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.11494 * 179.76847 * 28 27 26 50 50 H 1.07997 * 120.00990 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4201 2.0912 -1.3971 5 1 1.4888 2.6290 0.7763 6 1 3.5845 1.4189 0.6209 7 6 2.0102 -1.2021 0.0005 8 1 1.4803 -2.1316 0.1485 9 7 3.3668 -1.2097 -0.1865 10 6 4.1014 -0.4069 -1.1810 11 6 5.5358 -0.2828 -0.6090 12 6 5.7374 -1.6812 0.0321 13 6 4.3316 -2.0206 0.5706 14 1 4.2722 -1.7773 1.6313 15 6 4.0391 -3.5077 0.3608 16 6 2.8081 -3.9055 1.1778 17 6 2.6013 -5.4186 1.0846 18 7 1.4223 -5.7994 1.8663 19 6 1.0444 -7.0915 1.9298 20 8 1.6802 -7.9390 1.3394 21 6 -0.1647 -7.4841 2.7390 22 1 -0.0399 -7.2016 3.7843 23 6 -1.4516 -6.8614 2.1478 24 8 -2.4294 -7.8957 2.3557 25 6 -1.8066 -9.1061 2.3700 26 6 -2.3338 -10.3838 2.1980 27 6 -1.5127 -11.4897 2.2712 28 6 -0.1600 -11.3405 2.5168 29 6 0.3721 -10.0747 2.6855 30 6 -0.4454 -8.9687 2.6091 31 1 -0.4849 0.8400 0.0004 32 1 3.6473 0.5787 -1.2832 33 1 4.1197 -0.9187 -2.1431 34 1 5.5895 0.5036 0.1438 35 1 6.2605 -0.1095 -1.4045 36 1 6.4606 -1.6316 0.8462 37 1 6.0491 -2.4081 -0.7180 38 1 4.8969 -4.0962 0.6865 39 1 3.8500 -3.6953 -0.6960 40 1 1.9299 -3.3938 0.7841 41 1 2.9567 -3.6226 2.2199 42 1 3.4795 -5.9303 1.4782 43 1 2.4527 -5.7015 0.0424 44 1 0.9136 -5.1216 2.3382 45 1 -1.7258 -5.9555 2.6883 46 1 -1.3277 -6.6556 1.0846 47 1 -3.3892 -10.5090 2.0062 48 1 -1.9284 -12.4773 2.1364 49 1 0.4788 -12.2093 2.5770 50 1 1.4280 -9.9537 2.8770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567267371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:03 Heat of formation + Delta-G solvation = -18.320812 kcal Electronic energy + Delta-G solvation = -29721.656389 eV Core-core repulsion = 25714.752548 eV Total energy + Delta-G solvation = -4006.903841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.57396 -39.29428 -38.14464 -37.55939 -35.43053 -33.19383 -32.64498 -32.41768 -30.24927 -29.95336 -29.66551 -28.32376 -25.17845 -24.37612 -23.75224 -22.67493 -22.09297 -21.44777 -20.53622 -20.05440 -19.31840 -17.68373 -17.48133 -17.00292 -16.78184 -16.25843 -15.91183 -15.62056 -15.41869 -15.19021 -14.59397 -14.47196 -14.08904 -13.64056 -13.53986 -13.35569 -13.31566 -12.96211 -12.81190 -12.60491 -12.41616 -12.31387 -12.09504 -12.03498 -11.84446 -11.39208 -11.24576 -11.13338 -10.99250 -10.96739 -10.89823 -10.62430 -10.34748 -10.14485 -10.04753 -9.74624 -9.68602 -9.40182 -9.06552 -8.98675 -8.58192 -8.33929 -6.69323 -6.01843 -3.56685 1.09999 1.24441 2.51260 2.99255 3.14680 3.28758 3.41678 3.47264 3.63121 4.00849 4.30817 4.47293 4.63035 4.69773 4.86197 4.91809 4.97152 5.13415 5.20272 5.20338 5.22205 5.27014 5.35053 5.41755 5.44558 5.49673 5.53237 5.57658 5.74629 5.84370 5.95796 5.99301 6.09251 6.12988 6.13655 6.25815 6.26495 6.28030 6.34045 6.37507 6.41675 6.44711 6.52127 6.63679 6.67702 6.85238 6.88694 6.98600 7.05176 7.49195 7.99000 8.16173 8.36022 8.81999 9.61580 10.26300 11.11141 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002239 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.466087 B =12501.816319 C =13836.342505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.035 3.965 3 Si 0.895 3.105 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.266 1.266 7 C -0.251 4.251 8 H 0.091 0.909 9 N -0.604 5.604 10 C 0.118 3.882 11 C -0.138 4.138 12 C -0.126 4.126 13 C 0.158 3.842 14 H 0.041 0.959 15 C -0.114 4.114 16 C -0.140 4.140 17 C 0.120 3.880 18 N -0.722 5.722 19 C 0.521 3.479 20 O -0.532 6.532 21 C -0.102 4.102 22 H 0.122 0.878 23 C 0.063 3.937 24 O -0.300 6.300 25 C 0.107 3.893 26 C -0.144 4.144 27 C -0.083 4.083 28 C -0.154 4.154 29 C -0.040 4.040 30 C -0.154 4.154 31 H 0.264 0.736 32 H 0.037 0.963 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.404 0.596 45 H 0.120 0.880 46 H 0.085 0.915 47 H 0.128 0.872 48 H 0.130 0.870 49 H 0.127 0.873 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 -16.444 6.541 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.166 4.166 3 Si 0.726 3.274 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.191 1.191 7 C -0.378 4.378 8 H 0.108 0.892 9 N -0.330 5.330 10 C -0.006 4.006 11 C -0.176 4.176 12 C -0.164 4.164 13 C 0.051 3.949 14 H 0.059 0.941 15 C -0.154 4.154 16 C -0.177 4.177 17 C -0.003 4.003 18 N -0.373 5.373 19 C 0.306 3.694 20 O -0.408 6.408 21 C -0.124 4.124 22 H 0.140 0.860 23 C -0.012 4.012 24 O -0.213 6.213 25 C 0.062 3.938 26 C -0.162 4.162 27 C -0.101 4.101 28 C -0.172 4.172 29 C -0.058 4.058 30 C -0.155 4.155 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.238 0.762 45 H 0.138 0.862 46 H 0.104 0.896 47 H 0.146 0.854 48 H 0.148 0.852 49 H 0.145 0.855 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.856 -16.873 6.141 18.051 hybrid contribution 0.323 1.544 0.132 1.583 sum 2.179 -15.328 6.273 16.705 Atomic orbital electron populations 1.69747 1.05821 1.26808 1.52706 1.25615 0.95204 0.98272 0.97527 0.86615 0.80009 0.83653 0.77090 1.21613 1.23321 1.19078 1.18684 0.79341 0.93342 1.46471 0.89228 1.44641 1.02616 1.49678 1.36099 1.21865 0.90499 0.95263 0.92956 1.22786 0.97687 0.97272 0.99882 1.22589 0.97161 0.96879 0.99776 1.21057 0.88209 0.90356 0.95260 0.94139 1.21889 0.95826 0.97656 1.00045 1.22142 1.02261 0.92295 1.01026 1.21528 0.86492 0.96754 0.95479 1.46106 1.31000 1.07963 1.52222 1.20019 0.85189 0.82772 0.81446 1.90706 1.54977 1.49859 1.45244 1.21573 0.95091 0.93582 1.02122 0.85999 1.23877 0.84148 0.90811 1.02382 1.86865 1.33711 1.12970 1.87784 1.19580 0.90786 0.87193 0.96211 1.20220 1.00859 0.88690 1.06478 1.20879 0.93499 0.97864 0.97875 1.21052 0.95358 0.96912 1.03906 1.20355 0.99440 0.90595 0.95448 1.20208 0.94041 0.93707 1.07527 0.92642 0.94502 0.95404 0.91738 0.91901 0.91971 0.91684 0.93326 0.91939 0.87842 0.92132 0.92186 0.91739 0.76173 0.86215 0.89644 0.85417 0.85210 0.85493 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.55 13.97 55.49 0.78 -25.77 16 2 C 0.03 0.95 5.49 -17.43 -0.10 0.86 16 3 Si 0.89 22.02 24.77 -169.99 -4.21 17.81 16 4 H -0.29 -7.06 6.96 56.52 0.39 -6.66 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 6 H -0.27 -6.32 6.24 56.52 0.35 -5.97 16 7 C -0.25 -6.50 9.71 -15.06 -0.15 -6.64 16 8 H 0.09 2.40 5.08 -52.48 -0.27 2.13 16 9 N -0.60 -13.53 2.60 -162.57 -0.42 -13.95 16 10 C 0.12 2.47 6.05 -2.53 -0.02 2.45 16 11 C -0.14 -2.33 7.04 -24.58 -0.17 -2.50 16 12 C -0.13 -1.95 6.44 -24.90 -0.16 -2.11 16 13 C 0.16 2.89 3.19 -66.95 -0.21 2.67 16 14 H 0.04 0.78 8.02 -51.93 -0.42 0.36 16 15 C -0.11 -1.83 4.67 -26.73 -0.12 -1.96 16 16 C -0.14 -2.17 4.98 -26.73 -0.13 -2.31 16 17 C 0.12 1.70 5.67 -4.04 -0.02 1.67 16 18 N -0.72 -9.09 5.54 -60.29 -0.33 -9.42 16 19 C 0.52 7.03 7.07 -10.99 -0.08 6.96 16 20 O -0.53 -8.99 15.09 5.55 0.08 -8.91 16 21 C -0.10 -1.14 3.52 -91.56 -0.32 -1.46 16 22 H 0.12 1.08 8.14 -51.94 -0.42 0.66 16 23 C 0.06 0.67 7.54 38.05 0.29 0.96 16 24 O -0.30 -3.78 11.11 -20.16 -0.22 -4.00 16 25 C 0.11 1.35 7.04 -38.95 -0.27 1.08 16 26 C -0.14 -1.54 10.06 -39.30 -0.40 -1.94 16 27 C -0.08 -0.77 10.02 -39.67 -0.40 -1.17 16 28 C -0.15 -1.53 10.07 -39.52 -0.40 -1.93 16 29 C -0.04 -0.48 9.06 -39.72 -0.36 -0.84 16 30 C -0.15 -1.93 5.42 -104.10 -0.56 -2.50 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 32 H 0.04 0.84 3.45 -51.93 -0.18 0.66 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.13 7.61 -51.93 -0.40 0.74 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.92 7.85 -51.93 -0.41 0.52 16 38 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.95 4.70 -51.93 -0.24 1.70 16 41 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 44 H 0.40 4.32 8.47 -40.82 -0.35 3.98 16 45 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.09 0.97 7.91 -51.93 -0.41 0.56 16 47 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 48 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 50 H 0.13 1.49 7.73 -52.49 -0.41 1.08 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -32.14 391.02 -9.78 -41.92 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.75 Total: 5.14 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -3.59 Total: -8.70 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.02 Total: -49.15 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.14 Total: -12.91 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.21 Total: 17.81 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.14 -9.78 -41.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567267371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.601 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds