Wall clock time and date at job start Wed Apr 1 2020 02:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00297 * 2 1 4 4 H 1.48492 * 109.47104 * 273.67569 * 3 2 1 5 5 H 1.48501 * 109.46933 * 33.67581 * 3 2 1 6 6 H 1.48499 * 109.47233 * 153.67187 * 3 2 1 7 7 C 1.38810 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00080 * 350.92504 * 7 2 1 9 9 N 1.36940 * 120.00278 * 170.92670 * 7 2 1 10 10 C 1.47422 * 125.64460 * 316.93577 * 9 7 2 11 11 C 1.54914 * 104.83099 * 155.91413 * 10 9 7 12 12 C 1.55157 * 101.57826 * 37.00970 * 11 10 9 13 13 C 1.47023 * 125.64909 * 136.98487 * 9 7 2 14 14 H 1.08994 * 110.01143 * 300.50433 * 13 9 7 15 15 C 1.53002 * 109.87909 * 61.60191 * 13 9 7 16 16 C 1.53005 * 109.46859 * 284.56431 * 15 13 9 17 17 C 1.53002 * 109.46939 * 185.83800 * 16 15 13 18 18 N 1.46496 * 109.47012 * 180.02562 * 17 16 15 19 19 C 1.34775 * 120.00160 * 179.97438 * 18 17 16 20 20 O 1.21285 * 119.99851 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00239 * 179.72366 * 19 18 17 22 22 H 1.08989 * 110.82984 * 300.69749 * 21 19 18 23 23 C 1.54705 * 110.93680 * 64.41132 * 21 19 18 24 24 O 1.43839 * 102.75805 * 143.41791 * 23 21 19 25 25 C 1.36133 * 109.25649 * 332.30676 * 24 23 21 26 26 C 1.39288 * 129.87933 * 198.36644 * 25 24 23 27 27 C 1.37930 * 120.23864 * 180.96312 * 26 25 24 28 28 C 1.38292 * 120.34894 * 0.04979 * 27 26 25 29 29 C 1.38346 * 119.76978 * 359.79164 * 28 27 26 30 30 C 1.37743 * 119.97589 * 0.02562 * 29 28 27 31 31 H 0.96996 * 119.99628 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.37094 * 37.07789 * 10 9 7 33 33 H 1.08998 * 110.36867 * 274.75142 * 10 9 7 34 34 H 1.08997 * 111.00684 * 278.94004 * 11 10 9 35 35 H 1.08997 * 111.03801 * 155.09355 * 11 10 9 36 36 H 1.09005 * 110.72036 * 206.13178 * 12 11 10 37 37 H 1.09000 * 110.72179 * 82.86712 * 12 11 10 38 38 H 1.09006 * 109.47027 * 164.57337 * 15 13 9 39 39 H 1.08991 * 109.47318 * 44.57205 * 15 13 9 40 40 H 1.09002 * 109.46895 * 65.84297 * 16 15 13 41 41 H 1.08999 * 109.47315 * 305.83926 * 16 15 13 42 42 H 1.08996 * 109.47042 * 60.00117 * 17 16 15 43 43 H 1.09008 * 109.47048 * 300.00043 * 17 16 15 44 44 H 0.97002 * 120.00202 * 359.97438 * 18 17 16 45 45 H 1.09006 * 110.74825 * 261.76542 * 23 21 19 46 46 H 1.08996 * 110.75009 * 25.12373 * 23 21 19 47 47 H 1.08002 * 119.87882 * 0.99246 * 26 25 24 48 48 H 1.08001 * 119.82881 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.11494 * 179.76847 * 28 27 26 50 50 H 1.07997 * 120.00990 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4201 2.0912 -1.3971 5 1 1.4888 2.6290 0.7763 6 1 3.5845 1.4189 0.6209 7 6 2.0102 -1.2021 0.0005 8 1 1.4803 -2.1316 0.1485 9 7 3.3668 -1.2097 -0.1865 10 6 4.1014 -0.4069 -1.1810 11 6 5.5358 -0.2828 -0.6090 12 6 5.7374 -1.6812 0.0321 13 6 4.3316 -2.0206 0.5706 14 1 4.2722 -1.7773 1.6313 15 6 4.0391 -3.5077 0.3608 16 6 2.8081 -3.9055 1.1778 17 6 2.6013 -5.4186 1.0846 18 7 1.4223 -5.7994 1.8663 19 6 1.0444 -7.0915 1.9298 20 8 1.6802 -7.9390 1.3394 21 6 -0.1647 -7.4841 2.7390 22 1 -0.0399 -7.2016 3.7843 23 6 -1.4516 -6.8614 2.1478 24 8 -2.4294 -7.8957 2.3557 25 6 -1.8066 -9.1061 2.3700 26 6 -2.3338 -10.3838 2.1980 27 6 -1.5127 -11.4897 2.2712 28 6 -0.1600 -11.3405 2.5168 29 6 0.3721 -10.0747 2.6855 30 6 -0.4454 -8.9687 2.6091 31 1 -0.4849 0.8400 0.0004 32 1 3.6473 0.5787 -1.2832 33 1 4.1197 -0.9187 -2.1431 34 1 5.5895 0.5036 0.1438 35 1 6.2605 -0.1095 -1.4045 36 1 6.4606 -1.6316 0.8462 37 1 6.0491 -2.4081 -0.7180 38 1 4.8969 -4.0962 0.6865 39 1 3.8500 -3.6953 -0.6960 40 1 1.9299 -3.3938 0.7841 41 1 2.9567 -3.6226 2.2199 42 1 3.4795 -5.9303 1.4782 43 1 2.4527 -5.7015 0.0424 44 1 0.9136 -5.1216 2.3382 45 1 -1.7258 -5.9555 2.6883 46 1 -1.3277 -6.6556 1.0846 47 1 -3.3892 -10.5090 2.0062 48 1 -1.9284 -12.4773 2.1364 49 1 0.4788 -12.2093 2.5770 50 1 1.4280 -9.9537 2.8770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567267371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:02 Heat of formation + Delta-G solvation = -38.382907 kcal Electronic energy + Delta-G solvation = -29722.526347 eV Core-core repulsion = 25714.752548 eV Total energy + Delta-G solvation = -4007.773798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.46951 -40.39970 -39.64115 -38.37956 -36.65765 -34.59364 -34.24706 -33.54210 -31.71115 -31.08953 -30.60245 -29.56399 -26.55173 -25.92502 -24.82398 -23.61335 -23.04427 -22.77238 -21.85681 -21.20290 -20.81626 -18.85967 -18.55790 -18.38899 -17.91674 -17.72227 -16.90280 -16.73315 -16.54337 -16.23759 -16.05184 -15.76722 -15.12727 -14.94537 -14.80153 -14.52353 -14.36242 -14.17916 -14.09885 -13.94586 -13.68603 -13.58239 -13.42472 -13.11160 -13.07794 -12.94811 -12.63223 -12.49049 -12.41773 -12.14601 -11.96595 -11.89940 -11.79431 -11.47497 -11.40256 -11.36650 -11.13567 -10.93311 -10.62586 -10.15677 -9.88154 -9.19203 -8.54721 -8.10215 -5.61938 0.27714 0.40147 1.31035 1.39736 1.43916 1.51071 2.03902 2.23009 2.44666 2.78899 3.12549 3.15452 3.41514 3.45317 3.70590 3.86504 3.88633 4.00886 4.02714 4.14751 4.17234 4.21266 4.24595 4.42703 4.44751 4.45823 4.49331 4.52114 4.57233 4.67125 4.71858 4.79241 4.82296 4.88392 4.97154 5.02719 5.04542 5.17659 5.20473 5.27887 5.33335 5.40305 5.43276 5.44351 5.50352 5.54544 5.61563 5.67106 6.02215 6.15244 6.37824 6.45406 6.93723 7.09747 7.60661 8.32368 9.04767 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002239 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.466087 B =12501.816319 C =13836.342505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.025 4.025 3 Si 0.947 3.053 4 H -0.290 1.290 5 H -0.316 1.316 6 H -0.251 1.251 7 C -0.229 4.229 8 H 0.074 0.926 9 N -0.621 5.621 10 C 0.106 3.894 11 C -0.130 4.130 12 C -0.115 4.115 13 C 0.148 3.852 14 H 0.034 0.966 15 C -0.108 4.108 16 C -0.127 4.127 17 C 0.131 3.869 18 N -0.716 5.716 19 C 0.523 3.477 20 O -0.568 6.568 21 C -0.095 4.095 22 H 0.147 0.853 23 C 0.062 3.938 24 O -0.312 6.312 25 C 0.081 3.919 26 C -0.152 4.152 27 C -0.079 4.079 28 C -0.154 4.154 29 C -0.060 4.060 30 C -0.174 4.174 31 H 0.260 0.740 32 H 0.016 0.984 33 H 0.030 0.970 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.413 0.587 45 H 0.147 0.853 46 H 0.072 0.928 47 H 0.143 0.857 48 H 0.164 0.836 49 H 0.152 0.848 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.072 -17.689 7.266 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.220 4.220 3 Si 0.779 3.221 4 H -0.218 1.218 5 H -0.245 1.245 6 H -0.176 1.176 7 C -0.358 4.358 8 H 0.091 0.909 9 N -0.348 5.348 10 C -0.018 4.018 11 C -0.168 4.168 12 C -0.153 4.153 13 C 0.043 3.957 14 H 0.051 0.949 15 C -0.148 4.148 16 C -0.165 4.165 17 C 0.008 3.992 18 N -0.367 5.367 19 C 0.309 3.691 20 O -0.447 6.447 21 C -0.116 4.116 22 H 0.164 0.836 23 C -0.013 4.013 24 O -0.227 6.227 25 C 0.036 3.964 26 C -0.170 4.170 27 C -0.096 4.096 28 C -0.171 4.171 29 C -0.078 4.078 30 C -0.176 4.176 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.250 0.750 45 H 0.164 0.836 46 H 0.090 0.910 47 H 0.161 0.839 48 H 0.182 0.818 49 H 0.170 0.830 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.103 -18.114 6.877 19.806 hybrid contribution -0.335 1.784 -0.137 1.820 sum 3.768 -16.331 6.740 18.064 Atomic orbital electron populations 1.69868 1.07212 1.27007 1.55983 1.26206 0.95743 1.01144 0.98942 0.85757 0.79303 0.80334 0.76738 1.21777 1.24527 1.17552 1.18785 0.81285 0.92594 1.43180 0.90865 1.44834 1.02070 1.50414 1.37477 1.22030 0.92846 0.93823 0.93127 1.22763 0.95403 0.98033 1.00626 1.22600 0.95517 0.96195 1.01002 1.21304 0.89183 0.90735 0.94513 0.94855 1.21806 0.97051 0.96707 0.99214 1.21933 1.00672 0.92783 1.01105 1.21317 0.87394 0.95673 0.94848 1.46049 1.30676 1.08165 1.51813 1.20393 0.85391 0.82365 0.80939 1.90682 1.56330 1.50817 1.46839 1.21578 0.93882 0.93252 1.02903 0.83582 1.23995 0.83850 0.91403 1.02024 1.86837 1.34366 1.13408 1.88058 1.19912 0.91098 0.87782 0.97594 1.20610 1.02021 0.88457 1.05912 1.21294 0.93085 0.98961 0.96291 1.21418 0.96162 0.96957 1.02613 1.20517 0.99294 0.91487 0.96479 1.20441 0.94397 0.94410 1.08325 0.93145 0.96563 0.95168 0.92295 0.88665 0.89099 0.89895 0.90061 0.93434 0.91472 0.91338 0.91225 0.93434 0.75028 0.83577 0.91015 0.83896 0.81804 0.83012 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.85 13.97 21.65 0.30 -57.55 16 2 C -0.02 -1.39 5.49 84.86 0.47 -0.92 16 3 Si 0.95 46.21 24.77 68.60 1.70 47.90 16 4 H -0.29 -14.00 6.96 99.48 0.69 -13.31 16 5 H -0.32 -15.78 7.11 99.48 0.71 -15.08 16 6 H -0.25 -11.45 6.24 99.48 0.62 -10.83 16 7 C -0.23 -12.10 9.71 84.03 0.82 -11.28 16 8 H 0.07 4.08 5.08 -2.91 -0.01 4.07 16 9 N -0.62 -27.35 2.60 -668.26 -1.74 -29.08 16 10 C 0.11 4.24 6.05 86.86 0.53 4.77 16 11 C -0.13 -3.92 7.04 31.99 0.23 -3.70 16 12 C -0.12 -3.08 6.44 31.78 0.20 -2.87 16 13 C 0.15 5.09 3.19 45.34 0.14 5.23 16 14 H 0.03 1.21 8.02 -2.39 -0.02 1.19 16 15 C -0.11 -3.27 4.67 30.60 0.14 -3.12 16 16 C -0.13 -3.90 4.98 30.60 0.15 -3.75 16 17 C 0.13 3.64 5.67 86.38 0.49 4.13 16 18 N -0.72 -17.91 5.54 -463.06 -2.57 -20.48 16 19 C 0.52 14.16 7.07 87.66 0.62 14.78 16 20 O -0.57 -19.46 15.09 -3.05 -0.05 -19.51 16 21 C -0.10 -2.10 3.52 -11.40 -0.04 -2.14 16 22 H 0.15 2.44 8.14 -2.39 -0.02 2.42 16 23 C 0.06 1.33 7.54 72.56 0.55 1.88 16 24 O -0.31 -7.92 11.11 -95.07 -1.06 -8.98 16 25 C 0.08 2.03 7.04 22.68 0.16 2.19 16 26 C -0.15 -3.09 10.06 22.45 0.23 -2.86 16 27 C -0.08 -1.30 10.02 22.21 0.22 -1.08 16 28 C -0.15 -2.82 10.07 22.31 0.22 -2.59 16 29 C -0.06 -1.40 9.06 22.18 0.20 -1.20 16 30 C -0.17 -4.39 5.42 -19.52 -0.11 -4.50 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.02 0.73 3.45 -2.39 -0.01 0.72 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.85 7.61 -2.39 -0.02 1.83 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.08 1.95 7.85 -2.39 -0.02 1.94 16 38 H 0.08 1.96 8.09 -2.38 -0.02 1.94 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 2.60 4.70 -2.39 -0.01 2.59 16 41 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.41 8.75 8.47 -92.71 -0.79 7.97 16 45 H 0.15 2.24 8.14 -2.38 -0.02 2.22 16 46 H 0.07 1.70 7.91 -2.39 -0.02 1.68 16 47 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 48 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 49 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 50 H 0.12 2.88 7.73 -2.91 -0.02 2.86 16 Total: -1.00 -72.14 391.02 1.89 -70.26 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.07 Total: 24.47 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 5.22 Total: -7.04 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.00 Total: -107.11 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.10 Total: -28.48 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.70 Total: 47.90 kcal Total: -72.14 1.89 -70.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567267371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.872 kcal (2) G-P(sol) polarization free energy of solvation -72.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds