Wall clock time and date at job start Wed Apr 1 2020 03:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48503 * 109.46971 * 271.93828 * 3 2 1 5 5 H 1.48504 * 109.47372 * 31.93721 * 3 2 1 6 6 H 1.48495 * 109.47251 * 151.93759 * 3 2 1 7 7 C 1.38811 * 120.00155 * 179.72019 * 2 1 3 8 8 H 1.08009 * 119.99822 * 343.75994 * 7 2 1 9 9 N 1.36936 * 120.00038 * 163.75608 * 7 2 1 10 10 C 1.47419 * 125.64773 * 324.58184 * 9 7 2 11 11 C 1.54914 * 104.82799 * 155.83653 * 10 9 7 12 12 C 1.55158 * 101.58365 * 37.01229 * 11 10 9 13 13 C 1.47028 * 125.64669 * 144.27864 * 9 7 2 14 14 H 1.09003 * 109.87537 * 300.50817 * 13 9 7 15 15 C 1.52995 * 109.88294 * 61.67348 * 13 9 7 16 16 N 1.46496 * 109.47555 * 298.26755 * 15 13 9 17 17 C 1.34770 * 120.00159 * 173.05638 * 16 15 13 18 18 O 1.21284 * 120.00179 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00268 * 180.02562 * 17 16 15 20 20 O 1.42904 * 109.47612 * 179.97438 * 19 17 16 21 21 C 1.42900 * 114.00164 * 179.97438 * 20 19 17 22 22 C 1.50702 * 109.46920 * 180.02562 * 21 20 19 23 23 C 1.32560 * 119.99864 * 135.00400 * 22 21 20 24 24 C 1.47813 * 119.99961 * 179.97438 * 23 22 21 25 25 C 1.39537 * 120.14177 * 359.73169 * 24 23 22 26 26 C 1.37971 * 119.85611 * 179.71711 * 25 24 23 27 27 C 1.38343 * 120.14348 * 0.53357 * 26 25 24 28 28 C 1.38345 * 120.28591 * 359.75849 * 27 26 25 29 29 C 1.37981 * 120.14090 * 359.96214 * 28 27 26 30 30 H 0.97001 * 120.00514 * 0.28019 * 1 2 3 31 31 H 1.08998 * 110.36710 * 274.66891 * 10 9 7 32 32 H 1.08994 * 110.37199 * 36.88632 * 10 9 7 33 33 H 1.09005 * 111.00136 * 155.08487 * 11 10 9 34 34 H 1.08996 * 111.00505 * 278.93249 * 11 10 9 35 35 H 1.08992 * 110.71959 * 82.86090 * 12 11 10 36 36 H 1.08999 * 110.71250 * 206.13773 * 12 11 10 37 37 H 1.08998 * 109.47185 * 58.27471 * 15 13 9 38 38 H 1.09006 * 109.46627 * 178.26728 * 15 13 9 39 39 H 0.97004 * 119.99979 * 353.06102 * 16 15 13 40 40 H 1.08997 * 109.47419 * 300.00155 * 19 17 16 41 41 H 1.09005 * 109.46848 * 60.00079 * 19 17 16 42 42 H 1.08994 * 109.47628 * 300.00398 * 21 20 19 43 43 H 1.09004 * 109.46706 * 60.00685 * 21 20 19 44 44 H 1.08001 * 119.99525 * 315.00255 * 22 21 20 45 45 H 1.07999 * 120.00268 * 0.02562 * 23 22 21 46 46 H 1.08004 * 120.07008 * 359.96790 * 25 24 23 47 47 H 1.08000 * 119.92948 * 180.27185 * 26 25 24 48 48 H 1.07997 * 119.85904 * 179.74133 * 27 26 25 49 49 H 1.07999 * 119.93119 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.06963 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4566 2.0700 -1.3993 5 1 1.4687 2.6405 0.7406 6 1 3.5676 1.4287 0.6586 7 6 2.0102 -1.2021 0.0059 8 1 1.5025 -2.1175 0.2719 9 7 3.3386 -1.2274 -0.3257 10 6 3.9870 -0.3777 -1.3411 11 6 5.4763 -0.3213 -0.9185 12 6 5.7051 -1.7622 -0.3904 13 6 4.3556 -2.1020 0.2764 14 1 4.4136 -1.9188 1.3493 15 6 4.0029 -3.5674 0.0139 16 7 2.7153 -3.8794 0.6391 17 6 2.1332 -5.0755 0.4224 18 8 2.6756 -5.8937 -0.2898 19 6 0.8084 -5.3963 1.0650 20 8 0.4012 -6.7125 0.6858 21 6 -0.8499 -7.1176 1.2451 22 6 -1.1786 -8.5135 0.7818 23 6 -1.6274 -9.4109 1.6482 24 6 -1.9504 -10.7798 1.1938 25 6 -1.7894 -11.1291 -0.1475 26 6 -2.0871 -12.4103 -0.5641 27 6 -2.5549 -13.3446 0.3426 28 6 -2.7225 -13.0029 1.6727 29 6 -2.4229 -11.7267 2.1033 30 1 -0.4851 0.8400 -0.0041 31 1 3.8899 -0.8267 -2.3296 32 1 3.5510 0.6212 -1.3345 33 1 6.1177 -0.1126 -1.7748 34 1 5.6307 0.4135 -0.1285 35 1 5.9158 -2.4455 -1.2130 36 1 6.5107 -1.7804 0.3436 37 1 3.9361 -3.7383 -1.0605 38 1 4.7768 -4.2085 0.4363 39 1 2.2816 -3.2251 1.2090 40 1 0.9085 -5.3447 2.1492 41 1 0.0603 -4.6756 0.7345 42 1 -0.7837 -7.1023 2.3329 43 1 -1.6324 -6.4325 0.9189 44 1 -1.0486 -8.7827 -0.2560 45 1 -1.7578 -9.1415 2.6859 46 1 -1.4286 -10.3993 -0.8572 47 1 -1.9587 -12.6832 -1.6012 48 1 -2.7905 -14.3449 0.0106 49 1 -3.0884 -13.7367 2.3755 50 1 -2.5538 -11.4614 3.1419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567369831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:25 Heat of formation + Delta-G solvation = -7.089203 kcal Electronic energy + Delta-G solvation = -28587.084589 eV Core-core repulsion = 24580.667787 eV Total energy + Delta-G solvation = -4006.416801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.49094 -39.35188 -38.13362 -37.33722 -34.71636 -33.95855 -32.72642 -31.23113 -30.73700 -30.03598 -29.78598 -27.71108 -25.68009 -24.73945 -23.49227 -23.15068 -22.13346 -21.02363 -20.00458 -19.73121 -19.36434 -17.52425 -17.39162 -16.62964 -16.34969 -16.20409 -15.96919 -15.59769 -15.08189 -14.97704 -14.68465 -14.51384 -14.18973 -13.66795 -13.61290 -13.52915 -13.21546 -13.09810 -12.91013 -12.61407 -12.47062 -12.27651 -12.06487 -11.92655 -11.54128 -11.38194 -11.32434 -11.29877 -11.02916 -10.94246 -10.73502 -10.51463 -10.48073 -10.24036 -9.88975 -9.65988 -9.58950 -9.28224 -9.20129 -8.66791 -8.37582 -8.33356 -6.91774 -6.09732 -3.54813 0.66715 1.16165 2.21942 3.10158 3.24787 3.26417 3.38900 3.43607 3.69338 4.18270 4.42728 4.55508 4.63723 4.71935 4.82450 4.87421 4.96850 5.08218 5.10609 5.17101 5.19684 5.25935 5.29009 5.33965 5.38361 5.40488 5.45498 5.49488 5.54249 5.71384 5.78217 5.80954 5.91486 6.05067 6.07829 6.09046 6.17497 6.22687 6.26394 6.30449 6.36417 6.39130 6.53348 6.56745 6.74190 6.81014 6.82886 7.00307 7.14230 7.78432 8.10445 8.21138 8.68522 8.77407 9.54375 10.14115 11.04394 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.001737 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.227411 B =16117.002591 C =17033.743868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.033 3.967 3 Si 0.895 3.105 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.257 4.257 8 H 0.091 0.909 9 N -0.602 5.602 10 C 0.116 3.884 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.143 3.857 14 H 0.049 0.951 15 C 0.119 3.881 16 N -0.707 5.707 17 C 0.512 3.488 18 O -0.542 6.542 19 C 0.043 3.957 20 O -0.360 6.360 21 C 0.087 3.913 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.050 4.050 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.125 4.125 28 C -0.121 4.121 29 C -0.111 4.111 30 H 0.265 0.735 31 H 0.032 0.968 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.413 0.587 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.127 0.873 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 -17.495 4.599 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.168 4.168 3 Si 0.726 3.274 4 H -0.215 1.215 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.384 4.384 8 H 0.108 0.892 9 N -0.328 5.328 10 C -0.008 4.008 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.036 3.964 14 H 0.067 0.933 15 C -0.007 4.007 16 N -0.362 5.362 17 C 0.297 3.703 18 O -0.419 6.419 19 C -0.037 4.037 20 O -0.278 6.278 21 C 0.011 3.989 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.050 4.050 25 C -0.132 4.132 26 C -0.136 4.136 27 C -0.143 4.143 28 C -0.139 4.139 29 C -0.129 4.129 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.253 0.747 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.145 0.855 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.123 -18.089 4.014 18.563 hybrid contribution -0.101 1.559 0.334 1.597 sum -1.225 -16.530 4.348 17.136 Atomic orbital electron populations 1.69776 1.05766 1.26952 1.51966 1.25431 0.95218 0.98068 0.98079 0.86654 0.79826 0.83831 0.77046 1.21524 1.23274 1.19458 1.18654 0.81789 0.93891 1.44113 0.89178 1.44683 1.04724 1.43719 1.39696 1.21914 0.90795 0.95195 0.92927 1.22781 0.97504 0.96723 1.00437 1.22490 0.96408 0.96968 1.00093 1.21291 0.88999 0.89396 0.96723 0.93338 1.21911 0.83724 0.96874 0.98174 1.46145 1.23140 1.16032 1.50916 1.20086 0.86134 0.82317 0.81769 1.90665 1.64856 1.48101 1.38300 1.22255 0.95960 0.85990 0.99445 1.88008 1.37021 1.30552 1.72243 1.21495 0.86682 0.93623 0.97145 1.23153 0.97105 0.93622 1.00397 1.21570 1.01683 0.91339 0.99261 1.19049 0.98933 0.93605 0.93449 1.21415 0.99668 0.96777 0.95366 1.21114 0.99245 0.93425 0.99786 1.21214 0.99947 0.99497 0.93604 1.21088 1.00374 0.96422 0.96016 1.21268 0.99153 0.93213 0.99305 0.92514 0.95052 0.94079 0.91518 0.91589 0.91181 0.91382 0.91693 0.92908 0.74699 0.90533 0.89469 0.92458 0.91479 0.85928 0.86117 0.85490 0.85915 0.86182 0.86037 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 13.97 55.49 0.78 -25.14 16 2 C 0.03 0.90 5.46 -17.43 -0.10 0.80 16 3 Si 0.89 21.59 24.79 -169.99 -4.21 17.37 16 4 H -0.29 -6.90 6.77 56.52 0.38 -6.52 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.27 -6.30 7.06 56.52 0.40 -5.90 16 7 C -0.26 -6.53 9.49 -15.06 -0.14 -6.67 16 8 H 0.09 2.32 5.35 -52.48 -0.28 2.04 16 9 N -0.60 -13.32 2.69 -162.58 -0.44 -13.76 16 10 C 0.12 2.39 6.22 -2.53 -0.02 2.38 16 11 C -0.14 -2.21 7.08 -24.58 -0.17 -2.39 16 12 C -0.12 -1.81 6.47 -24.90 -0.16 -1.97 16 13 C 0.14 2.59 3.34 -66.96 -0.22 2.36 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 15 C 0.12 2.14 5.19 -4.05 -0.02 2.11 16 16 N -0.71 -12.97 4.36 -60.30 -0.26 -13.23 16 17 C 0.51 9.72 7.91 -10.99 -0.09 9.63 16 18 O -0.54 -12.20 16.48 -14.36 -0.24 -12.44 16 19 C 0.04 0.67 6.42 36.00 0.23 0.90 16 20 O -0.36 -5.81 9.86 -55.14 -0.54 -6.36 16 21 C 0.09 1.03 6.36 36.01 0.23 1.26 16 22 C -0.12 -1.41 9.31 -36.22 -0.34 -1.75 16 23 C -0.12 -1.21 9.51 -37.57 -0.36 -1.57 16 24 C -0.05 -0.52 5.87 -105.01 -0.62 -1.13 16 25 C -0.11 -1.15 9.40 -39.20 -0.37 -1.52 16 26 C -0.12 -1.04 10.03 -39.64 -0.40 -1.44 16 27 C -0.12 -1.01 10.04 -39.50 -0.40 -1.41 16 28 C -0.12 -0.98 10.03 -39.64 -0.40 -1.37 16 29 C -0.11 -0.99 9.79 -39.19 -0.38 -1.38 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.92 3.03 -51.93 -0.16 0.77 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.29 8.11 -51.93 -0.42 0.87 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.41 7.55 6.07 -40.82 -0.25 7.31 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.12 1.41 6.04 -52.49 -0.32 1.09 16 45 H 0.12 1.00 7.92 -52.49 -0.42 0.58 16 46 H 0.13 1.20 6.17 -52.48 -0.32 0.88 16 47 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 48 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 49 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 50 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 403.22 15.07 6.08 6.08 Total: -1.00 -32.84 403.22 -10.19 -43.03 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.63 Total: 7.60 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.72 Total: -3.15 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.07 Total: -52.14 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.78 Total: -18.79 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.21 Total: 17.37 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.84 -10.19 -43.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567369831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.943 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds