Wall clock time and date at job start Wed Apr 1 2020 02:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00215 * 2 1 4 4 H 1.48502 * 109.47178 * 273.11184 * 3 2 1 5 5 H 1.48500 * 109.47376 * 153.11358 * 3 2 1 6 6 H 1.48504 * 109.46964 * 33.11389 * 3 2 1 7 7 C 1.38814 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00335 * 344.07956 * 7 2 1 9 9 N 1.36938 * 119.99582 * 164.06762 * 7 2 1 10 10 C 1.46502 * 119.99413 * 126.52350 * 9 7 2 11 11 C 1.53008 * 109.47147 * 90.00060 * 10 9 7 12 12 N 1.46498 * 109.47039 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99799 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00069 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99760 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.47126 * 179.97438 * 15 13 12 17 17 H 1.09005 * 109.33617 * 55.00149 * 16 15 13 18 18 O 1.42725 * 109.33991 * 295.32487 * 16 15 13 19 19 C 1.43157 * 113.17154 * 187.87828 * 18 16 15 20 20 C 1.52974 * 108.32052 * 70.94039 * 19 18 16 21 21 C 1.50734 * 109.75906 * 310.72459 * 20 19 18 22 22 C 1.38595 * 118.76459 * 196.86920 * 21 20 19 23 23 C 1.38070 * 120.27473 * 180.24475 * 22 21 20 24 24 C 1.38261 * 119.86463 * 359.97438 * 23 22 21 25 25 C 1.38050 * 119.89562 * 359.91095 * 24 23 22 26 26 C 1.37915 * 121.35042 * 16.95950 * 21 20 19 27 27 C 1.46500 * 120.00456 * 306.52164 * 9 7 2 28 28 C 1.53001 * 117.49709 * 2.83897 * 27 9 7 29 29 C 1.52998 * 117.49991 * 294.17970 * 27 9 7 30 30 H 0.97002 * 119.99512 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46936 * 209.99907 * 10 9 7 32 32 H 1.09000 * 109.47558 * 330.00020 * 10 9 7 33 33 H 1.08994 * 109.47254 * 299.99747 * 11 10 9 34 34 H 1.09004 * 109.46842 * 60.00061 * 11 10 9 35 35 H 0.96998 * 120.00004 * 0.02562 * 12 11 10 36 36 H 1.09004 * 109.47082 * 299.99730 * 15 13 12 37 37 H 1.09000 * 109.47560 * 59.99933 * 15 13 12 38 38 H 1.09003 * 109.74015 * 311.27508 * 19 18 16 39 39 H 1.08997 * 109.67652 * 190.57054 * 19 18 16 40 40 H 1.09004 * 109.42625 * 190.63357 * 20 19 18 41 41 H 1.09009 * 109.37649 * 70.78915 * 20 19 18 42 42 H 1.07997 * 119.86140 * 0.22476 * 22 21 20 43 43 H 1.08006 * 120.06736 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.04770 * 179.91080 * 24 23 22 45 45 H 1.08005 * 119.84811 * 180.02562 * 25 24 23 46 46 H 1.09004 * 115.55067 * 148.50442 * 27 9 7 47 47 H 1.09004 * 117.49821 * 359.97438 * 28 27 9 48 48 H 1.09003 * 117.49773 * 145.02013 * 28 27 9 49 49 H 1.08996 * 117.49609 * 214.97984 * 29 27 9 50 50 H 1.09003 * 117.49761 * 359.96777 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4320 2.0843 -1.3980 5 1 3.5792 1.4220 0.6331 6 1 1.4822 2.6327 0.7649 7 6 2.0103 -1.2022 0.0005 8 1 1.5013 -2.1194 0.2575 9 7 3.3402 -1.2251 -0.3250 10 6 4.3064 -1.8448 0.5853 11 6 4.4580 -3.3268 0.2362 12 7 5.4247 -3.9464 1.1461 13 6 5.7201 -5.2558 1.0256 14 8 5.1860 -5.9211 0.1637 15 6 6.7141 -5.8932 1.9619 16 6 6.8658 -7.3751 1.6129 17 1 7.1336 -7.4725 0.5607 18 8 5.6283 -8.0456 1.8496 19 6 5.7248 -9.4681 1.7214 20 6 6.5271 -10.0046 2.9083 21 6 7.7980 -9.2095 3.0653 22 6 8.8231 -9.7358 3.8354 23 6 9.9988 -9.0318 4.0043 24 6 10.1543 -7.7969 3.4023 25 6 9.1347 -7.2731 2.6331 26 6 7.9537 -7.9789 2.4624 27 6 3.7967 -0.6300 -1.5834 28 6 2.7492 0.0601 -2.4595 29 6 3.3349 -1.2886 -2.8849 30 1 -0.4849 0.8401 -0.0004 31 1 5.2711 -1.3473 0.4847 32 1 3.9528 -1.7476 1.6117 33 1 3.4935 -3.8243 0.3368 34 1 4.8118 -3.4240 -0.7902 35 1 5.8522 -3.4142 1.8352 36 1 7.6786 -5.3954 1.8617 37 1 6.3602 -5.7965 2.9883 38 1 6.2339 -9.7203 0.7912 39 1 4.7265 -9.9056 1.7263 40 1 6.7738 -11.0521 2.7353 41 1 5.9307 -9.9180 3.8167 42 1 8.7016 -10.7005 4.3056 43 1 10.7956 -9.4454 4.6048 44 1 11.0722 -7.2431 3.5336 45 1 9.2572 -6.3085 2.1629 46 1 4.7986 -0.2009 -1.5644 47 1 1.7203 0.0710 -2.0997 48 1 3.0621 0.9429 -3.0171 49 1 4.0328 -1.2926 -3.7221 50 1 2.6918 -2.1651 -2.8048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567454096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:03 Heat of formation + Delta-G solvation = -4.004672 kcal Electronic energy + Delta-G solvation = -29614.669359 eV Core-core repulsion = 25608.386312 eV Total energy + Delta-G solvation = -4006.283046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.78122 -39.23931 -37.69069 -37.37776 -34.86179 -33.96025 -32.80858 -32.46863 -31.70613 -30.31604 -29.01704 -27.52433 -24.78312 -24.12331 -23.86219 -22.31802 -21.60420 -21.55931 -20.33206 -20.20494 -19.63688 -17.68927 -16.93931 -16.80545 -16.55612 -16.00507 -15.71282 -15.46091 -15.08497 -15.02216 -14.63719 -14.49710 -14.24661 -13.97351 -13.71034 -13.46935 -13.38832 -13.12172 -12.92276 -12.64373 -12.49667 -12.30176 -12.11879 -12.00572 -11.66943 -11.61760 -11.45284 -11.21147 -10.83457 -10.80677 -10.71706 -10.37656 -10.33657 -9.81126 -9.79092 -9.60163 -9.51044 -9.11037 -9.09032 -8.91235 -8.64573 -8.42411 -6.55931 -6.04450 -3.72030 0.97883 1.02832 2.91228 3.31457 3.37258 3.45093 3.46833 3.53183 3.62866 4.32234 4.33433 4.48301 4.49939 4.59419 4.77740 4.80721 4.85543 4.86613 4.97171 5.01698 5.09261 5.10351 5.22462 5.27274 5.31956 5.38221 5.52068 5.61371 5.65509 5.70370 5.75709 5.77576 5.83646 5.86323 6.06028 6.10286 6.13778 6.16911 6.23661 6.26152 6.51870 6.56353 6.64267 6.65361 6.67850 6.90089 7.03174 7.04916 7.31190 7.79911 8.06264 8.45770 8.54020 8.96261 9.60333 10.07451 11.05670 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021442 B = 0.002017 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.561534 B =13881.708679 C =14210.558255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.887 3.113 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.305 1.305 7 C -0.287 4.287 8 H 0.072 0.928 9 N -0.569 5.569 10 C 0.143 3.857 11 C 0.100 3.900 12 N -0.728 5.728 13 C 0.510 3.490 14 O -0.530 6.530 15 C -0.134 4.134 16 C 0.149 3.851 17 H 0.080 0.920 18 O -0.354 6.354 19 C 0.060 3.940 20 C -0.118 4.118 21 C -0.070 4.070 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.111 4.111 26 C -0.113 4.113 27 C 0.107 3.893 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.265 0.735 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.395 0.605 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.121 0.879 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.092 -16.431 7.380 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.147 4.147 3 Si 0.715 3.285 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.233 1.233 7 C -0.416 4.416 8 H 0.090 0.910 9 N -0.288 5.288 10 C 0.016 3.984 11 C -0.026 4.026 12 N -0.380 5.380 13 C 0.295 3.705 14 O -0.406 6.406 15 C -0.174 4.174 16 C 0.090 3.910 17 H 0.097 0.903 18 O -0.272 6.272 19 C -0.017 4.017 20 C -0.155 4.155 21 C -0.070 4.070 22 C -0.137 4.137 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.129 4.129 26 C -0.113 4.113 27 C 0.000 4.000 28 C -0.237 4.237 29 C -0.253 4.253 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.229 0.771 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.105 0.895 47 H 0.139 0.861 48 H 0.094 0.906 49 H 0.090 0.910 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 20.321 -16.693 6.825 27.170 hybrid contribution 0.853 0.999 0.294 1.346 sum 21.174 -15.695 7.118 27.301 Atomic orbital electron populations 1.69880 1.06269 1.27147 1.50134 1.25838 0.95034 0.98644 0.95223 0.86807 0.80136 0.83386 0.78163 1.19477 1.19595 1.23285 1.18573 0.83223 0.93559 1.46218 0.91031 1.43428 1.04350 1.66057 1.14996 1.21042 0.92803 0.89706 0.94824 1.22209 0.91767 0.95902 0.92674 1.46053 1.45553 1.09784 1.36599 1.20330 0.83043 0.82087 0.85036 1.90722 1.52389 1.62042 1.35450 1.21806 1.00337 0.93849 1.01384 1.20515 0.82684 0.90513 0.97283 0.90276 1.88182 1.29708 1.17945 1.91383 1.22581 1.01041 0.81763 0.96313 1.21196 0.94176 0.99166 1.00954 1.19538 0.95806 0.94399 0.97234 1.21078 0.93417 1.00144 0.99101 1.21126 0.97538 0.95192 0.99800 1.21107 0.98943 0.96089 0.97910 1.21100 0.92888 0.99863 0.99035 1.20284 0.96366 0.95132 0.99515 1.21318 0.94969 0.99859 0.83870 1.23577 1.01938 0.94340 1.03894 1.23382 1.04710 0.97194 0.99982 0.92479 0.94149 0.91930 0.91385 0.92159 0.77145 0.87568 0.87943 0.92661 0.88178 0.89803 0.89574 0.86016 0.86022 0.85866 0.85602 0.89470 0.86085 0.90640 0.91037 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.97 55.49 0.78 -25.77 16 2 C 0.06 1.54 3.70 -17.43 -0.06 1.48 16 3 Si 0.89 21.68 24.70 -169.99 -4.20 17.48 16 4 H -0.27 -6.28 5.64 56.52 0.32 -5.96 16 5 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 7 C -0.29 -7.80 9.24 -15.06 -0.14 -7.94 16 8 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 9 N -0.57 -13.06 2.10 -165.65 -0.35 -13.41 16 10 C 0.14 2.68 5.83 -4.04 -0.02 2.65 16 11 C 0.10 1.79 6.00 -4.04 -0.02 1.77 16 12 N -0.73 -10.25 5.56 -60.29 -0.33 -10.58 16 13 C 0.51 7.58 7.70 -10.99 -0.08 7.50 16 14 O -0.53 -10.27 15.40 -9.29 -0.14 -10.42 16 15 C -0.13 -1.41 5.10 -27.88 -0.14 -1.55 16 16 C 0.15 1.73 2.28 -27.90 -0.06 1.66 16 17 H 0.08 0.99 7.95 -51.93 -0.41 0.57 16 18 O -0.35 -4.80 9.63 -50.08 -0.48 -5.29 16 19 C 0.06 0.60 6.85 37.14 0.25 0.86 16 20 C -0.12 -0.97 6.00 -27.88 -0.17 -1.14 16 21 C -0.07 -0.66 5.78 -104.59 -0.60 -1.26 16 22 C -0.12 -0.96 9.67 -39.51 -0.38 -1.34 16 23 C -0.12 -0.88 10.05 -39.63 -0.40 -1.27 16 24 C -0.12 -0.92 10.05 -39.64 -0.40 -1.32 16 25 C -0.11 -0.93 9.08 -39.50 -0.36 -1.29 16 26 C -0.11 -1.13 5.46 -104.61 -0.57 -1.70 16 27 C 0.11 2.28 5.13 -67.93 -0.35 1.93 16 28 C -0.20 -4.40 6.57 -26.69 -0.18 -4.57 16 29 C -0.21 -4.31 10.37 -26.69 -0.28 -4.58 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.40 4.21 8.47 -40.82 -0.35 3.86 16 36 H 0.11 0.79 6.32 -51.93 -0.33 0.46 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.13 0.83 6.46 -52.48 -0.34 0.49 16 46 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 47 H 0.12 3.09 4.94 -51.93 -0.26 2.84 16 48 H 0.08 1.51 7.74 -51.93 -0.40 1.11 16 49 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.09 2.01 8.14 -51.93 -0.42 1.58 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -33.81 395.96 -10.79 -44.59 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -8.05 Total: 7.54 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -3.97 Total: -10.12 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.09 Total: -49.76 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.63 Total: -15.70 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.20 Total: 17.48 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.81 -10.79 -44.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567454096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.587 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds