Wall clock time and date at job start Wed Apr 1 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00215 * 2 1 4 4 H 1.48502 * 109.47178 * 273.11184 * 3 2 1 5 5 H 1.48500 * 109.47376 * 153.11358 * 3 2 1 6 6 H 1.48504 * 109.46964 * 33.11389 * 3 2 1 7 7 C 1.38814 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00335 * 344.07956 * 7 2 1 9 9 N 1.36938 * 119.99582 * 164.06762 * 7 2 1 10 10 C 1.46502 * 119.99413 * 126.52350 * 9 7 2 11 11 C 1.53008 * 109.47147 * 90.00060 * 10 9 7 12 12 N 1.46498 * 109.47039 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99799 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00069 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99760 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.47126 * 179.97438 * 15 13 12 17 17 H 1.09005 * 109.33617 * 55.00149 * 16 15 13 18 18 O 1.42725 * 109.33991 * 295.32487 * 16 15 13 19 19 C 1.43157 * 113.17154 * 187.87828 * 18 16 15 20 20 C 1.52974 * 108.32052 * 70.94039 * 19 18 16 21 21 C 1.50734 * 109.75906 * 310.72459 * 20 19 18 22 22 C 1.38595 * 118.76459 * 196.86920 * 21 20 19 23 23 C 1.38070 * 120.27473 * 180.24475 * 22 21 20 24 24 C 1.38261 * 119.86463 * 359.97438 * 23 22 21 25 25 C 1.38050 * 119.89562 * 359.91095 * 24 23 22 26 26 C 1.37915 * 121.35042 * 16.95950 * 21 20 19 27 27 C 1.46500 * 120.00456 * 306.52164 * 9 7 2 28 28 C 1.53001 * 117.49709 * 2.83897 * 27 9 7 29 29 C 1.52998 * 117.49991 * 294.17970 * 27 9 7 30 30 H 0.97002 * 119.99512 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46936 * 209.99907 * 10 9 7 32 32 H 1.09000 * 109.47558 * 330.00020 * 10 9 7 33 33 H 1.08994 * 109.47254 * 299.99747 * 11 10 9 34 34 H 1.09004 * 109.46842 * 60.00061 * 11 10 9 35 35 H 0.96998 * 120.00004 * 0.02562 * 12 11 10 36 36 H 1.09004 * 109.47082 * 299.99730 * 15 13 12 37 37 H 1.09000 * 109.47560 * 59.99933 * 15 13 12 38 38 H 1.09003 * 109.74015 * 311.27508 * 19 18 16 39 39 H 1.08997 * 109.67652 * 190.57054 * 19 18 16 40 40 H 1.09004 * 109.42625 * 190.63357 * 20 19 18 41 41 H 1.09009 * 109.37649 * 70.78915 * 20 19 18 42 42 H 1.07997 * 119.86140 * 0.22476 * 22 21 20 43 43 H 1.08006 * 120.06736 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.04770 * 179.91080 * 24 23 22 45 45 H 1.08005 * 119.84811 * 180.02562 * 25 24 23 46 46 H 1.09004 * 115.55067 * 148.50442 * 27 9 7 47 47 H 1.09004 * 117.49821 * 359.97438 * 28 27 9 48 48 H 1.09003 * 117.49773 * 145.02013 * 28 27 9 49 49 H 1.08996 * 117.49609 * 214.97984 * 29 27 9 50 50 H 1.09003 * 117.49761 * 359.96777 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4320 2.0843 -1.3980 5 1 3.5792 1.4220 0.6331 6 1 1.4822 2.6327 0.7649 7 6 2.0103 -1.2022 0.0005 8 1 1.5013 -2.1194 0.2575 9 7 3.3402 -1.2251 -0.3250 10 6 4.3064 -1.8448 0.5853 11 6 4.4580 -3.3268 0.2362 12 7 5.4247 -3.9464 1.1461 13 6 5.7201 -5.2558 1.0256 14 8 5.1860 -5.9211 0.1637 15 6 6.7141 -5.8932 1.9619 16 6 6.8658 -7.3751 1.6129 17 1 7.1336 -7.4725 0.5607 18 8 5.6283 -8.0456 1.8496 19 6 5.7248 -9.4681 1.7214 20 6 6.5271 -10.0046 2.9083 21 6 7.7980 -9.2095 3.0653 22 6 8.8231 -9.7358 3.8354 23 6 9.9988 -9.0318 4.0043 24 6 10.1543 -7.7969 3.4023 25 6 9.1347 -7.2731 2.6331 26 6 7.9537 -7.9789 2.4624 27 6 3.7967 -0.6300 -1.5834 28 6 2.7492 0.0601 -2.4595 29 6 3.3349 -1.2886 -2.8849 30 1 -0.4849 0.8401 -0.0004 31 1 5.2711 -1.3473 0.4847 32 1 3.9528 -1.7476 1.6117 33 1 3.4935 -3.8243 0.3368 34 1 4.8118 -3.4240 -0.7902 35 1 5.8522 -3.4142 1.8352 36 1 7.6786 -5.3954 1.8617 37 1 6.3602 -5.7965 2.9883 38 1 6.2339 -9.7203 0.7912 39 1 4.7265 -9.9056 1.7263 40 1 6.7738 -11.0521 2.7353 41 1 5.9307 -9.9180 3.8167 42 1 8.7016 -10.7005 4.3056 43 1 10.7956 -9.4454 4.6048 44 1 11.0722 -7.2431 3.5336 45 1 9.2572 -6.3085 2.1629 46 1 4.7986 -0.2009 -1.5644 47 1 1.7203 0.0710 -2.0997 48 1 3.0621 0.9429 -3.0171 49 1 4.0328 -1.2926 -3.7221 50 1 2.6918 -2.1651 -2.8048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567454096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:02 Heat of formation + Delta-G solvation = -25.285622 kcal Electronic energy + Delta-G solvation = -29615.592170 eV Core-core repulsion = 25608.386312 eV Total energy + Delta-G solvation = -4007.205857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.56043 -40.40312 -39.15051 -38.41344 -36.28954 -34.76240 -34.60533 -33.61462 -33.15154 -31.08925 -30.03626 -28.85017 -26.27191 -25.20935 -24.70382 -23.45065 -23.29080 -22.68283 -21.73239 -21.14524 -20.98733 -18.85610 -18.49444 -17.87671 -17.38571 -17.14776 -16.75189 -16.64066 -16.41579 -16.37825 -16.03853 -15.51266 -15.26993 -15.19141 -14.87768 -14.69588 -14.51788 -14.29236 -14.09944 -13.89960 -13.49790 -13.43938 -13.36984 -13.19941 -13.00519 -12.63569 -12.59351 -12.49093 -12.36723 -12.12520 -11.95073 -11.85931 -11.76716 -11.55322 -11.30693 -10.93848 -10.85036 -10.56330 -10.47070 -10.01344 -9.69449 -9.53662 -8.46953 -8.16783 -5.86774 0.36787 0.45526 1.45788 1.48055 1.61395 1.72593 2.19633 2.47498 2.73543 2.87360 2.99291 3.22252 3.37970 3.58990 3.65975 3.82061 3.90200 4.03785 4.14281 4.20983 4.22984 4.25948 4.26756 4.30026 4.33703 4.35796 4.44980 4.50660 4.59997 4.63502 4.68001 4.70348 4.82654 4.88911 4.90978 4.96252 4.96769 5.09207 5.09401 5.17418 5.20788 5.31604 5.52401 5.53169 5.55241 5.61556 5.64313 5.97185 6.08841 6.20830 6.25839 6.66271 7.06574 7.37233 7.55924 8.03904 8.95389 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021442 B = 0.002017 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.561534 B =13881.708679 C =14210.558255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.248 1.248 5 H -0.253 1.253 6 H -0.316 1.316 7 C -0.281 4.281 8 H 0.016 0.984 9 N -0.582 5.582 10 C 0.145 3.855 11 C 0.119 3.881 12 N -0.714 5.714 13 C 0.506 3.494 14 O -0.582 6.582 15 C -0.121 4.121 16 C 0.147 3.853 17 H 0.060 0.940 18 O -0.388 6.388 19 C 0.052 3.948 20 C -0.111 4.111 21 C -0.089 4.089 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.130 4.130 27 C 0.102 3.898 28 C -0.213 4.213 29 C -0.201 4.201 30 H 0.265 0.735 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.020 0.980 34 H 0.049 0.951 35 H 0.417 0.583 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.052 0.948 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.143 0.857 46 H 0.130 0.870 47 H 0.080 0.920 48 H 0.103 0.897 49 H 0.110 0.890 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.765 -15.432 8.221 31.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.172 1.172 5 H -0.177 1.177 6 H -0.245 1.245 7 C -0.410 4.410 8 H 0.034 0.966 9 N -0.302 5.302 10 C 0.019 3.981 11 C -0.007 4.007 12 N -0.367 5.367 13 C 0.294 3.706 14 O -0.461 6.461 15 C -0.160 4.160 16 C 0.089 3.911 17 H 0.078 0.922 18 O -0.307 6.307 19 C -0.024 4.024 20 C -0.148 4.148 21 C -0.089 4.089 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.144 4.144 25 C -0.134 4.134 26 C -0.131 4.131 27 C -0.004 4.004 28 C -0.251 4.251 29 C -0.241 4.241 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.068 0.932 35 H 0.254 0.746 36 H 0.163 0.837 37 H 0.133 0.867 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.157 0.843 43 H 0.163 0.837 44 H 0.165 0.835 45 H 0.161 0.839 46 H 0.147 0.853 47 H 0.098 0.902 48 H 0.122 0.878 49 H 0.129 0.871 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 25.054 -15.704 7.689 30.552 hybrid contribution -0.625 0.515 0.007 0.810 sum 24.429 -15.188 7.696 29.777 Atomic orbital electron populations 1.70023 1.08327 1.27976 1.52498 1.26496 0.95484 1.02256 0.94834 0.85761 0.79050 0.78293 0.79125 1.17243 1.17707 1.24493 1.18237 0.85360 0.91685 1.45753 0.96590 1.43544 1.03381 1.66617 1.16680 1.21139 0.93547 0.89612 0.93779 1.21702 0.90495 0.95515 0.93021 1.45841 1.44548 1.09959 1.36397 1.21150 0.82944 0.81757 0.84789 1.90704 1.54388 1.63186 1.37850 1.21849 1.00664 0.93223 1.00311 1.20508 0.82751 0.91065 0.96787 0.92234 1.88122 1.31333 1.19712 1.91578 1.22754 1.01827 0.80579 0.97279 1.21148 0.93682 1.00121 0.99839 1.19762 0.96594 0.94604 0.97949 1.21327 0.93269 1.01002 0.98823 1.21495 0.97801 0.95111 0.99446 1.21445 0.99492 0.96298 0.97159 1.21331 0.92423 1.00528 0.99159 1.20209 0.96544 0.95920 1.00399 1.21692 0.96254 0.99589 0.82897 1.23505 1.00118 0.96258 1.05233 1.23333 1.04436 0.95139 1.01193 0.92576 0.89856 0.92292 0.96104 0.93215 0.74624 0.83670 0.86694 0.92927 0.87710 0.87714 0.89582 0.84272 0.83709 0.83518 0.83890 0.85298 0.90165 0.87830 0.87142 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.73 13.97 21.65 0.30 -58.42 16 2 C 0.01 0.43 3.70 84.86 0.31 0.75 16 3 Si 0.95 44.29 24.70 68.60 1.69 45.99 16 4 H -0.25 -10.61 5.64 99.48 0.56 -10.05 16 5 H -0.25 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.32 -15.19 7.11 99.48 0.71 -14.49 16 7 C -0.28 -15.87 9.24 84.03 0.78 -15.09 16 8 H 0.02 1.08 8.06 -2.91 -0.02 1.05 16 9 N -0.58 -26.40 2.10 -678.01 -1.42 -27.82 16 10 C 0.14 5.20 5.83 86.38 0.50 5.71 16 11 C 0.12 4.33 6.00 86.38 0.52 4.85 16 12 N -0.71 -19.39 5.56 -463.06 -2.57 -21.96 16 13 C 0.51 15.00 7.70 87.66 0.68 15.67 16 14 O -0.58 -23.54 15.40 11.19 0.17 -23.37 16 15 C -0.12 -2.39 5.10 29.85 0.15 -2.24 16 16 C 0.15 3.42 2.28 29.83 0.07 3.49 16 17 H 0.06 1.56 7.95 -2.38 -0.02 1.54 16 18 O -0.39 -10.98 9.63 -134.78 -1.30 -12.28 16 19 C 0.05 1.09 6.85 71.97 0.49 1.58 16 20 C -0.11 -1.77 6.00 29.85 0.18 -1.59 16 21 C -0.09 -1.58 5.78 -19.85 -0.11 -1.69 16 22 C -0.13 -1.75 9.67 22.32 0.22 -1.53 16 23 C -0.12 -1.42 10.05 22.24 0.22 -1.20 16 24 C -0.13 -1.49 10.05 22.23 0.22 -1.27 16 25 C -0.12 -1.67 9.08 22.32 0.20 -1.46 16 26 C -0.13 -2.46 5.46 -19.86 -0.11 -2.57 16 27 C 0.10 4.07 5.13 44.99 0.23 4.30 16 28 C -0.21 -8.99 6.57 30.62 0.20 -8.79 16 29 C -0.20 -7.84 10.37 30.62 0.32 -7.52 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 32 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 33 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.42 7.76 8.47 -92.71 -0.79 6.97 16 36 H 0.15 1.67 6.32 -2.39 -0.02 1.66 16 37 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 1.08 8.07 -2.39 -0.02 1.06 16 39 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 43 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 45 H 0.14 1.40 6.46 -2.91 -0.02 1.38 16 46 H 0.13 4.15 8.14 -2.38 -0.02 4.13 16 47 H 0.08 4.13 4.94 -2.39 -0.01 4.12 16 48 H 0.10 3.76 7.74 -2.39 -0.02 3.74 16 49 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 50 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -79.82 395.96 1.96 -77.86 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.01 Total: 28.61 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 5.07 Total: -8.61 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -3.69 Total: -108.21 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.12 Total: -35.65 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.69 Total: 45.99 kcal Total: -79.82 1.96 -77.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567454096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.579 kcal (2) G-P(sol) polarization free energy of solvation -79.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds