Wall clock time and date at job start Wed Apr 1 2020 02:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00156 * 2 1 4 4 H 1.48501 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47430 * 300.00611 * 3 2 1 6 6 H 1.48507 * 109.47042 * 60.00353 * 3 2 1 7 7 C 1.38811 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00512 * 160.27318 * 7 2 1 9 9 N 1.36942 * 120.00093 * 340.28006 * 7 2 1 10 10 C 1.46504 * 119.99582 * 320.53201 * 9 7 2 11 11 C 1.53002 * 109.47105 * 270.00175 * 10 9 7 12 12 N 1.46504 * 109.47105 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99805 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00068 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99479 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.46780 * 180.02562 * 15 13 12 17 17 H 1.08998 * 109.33846 * 305.32301 * 16 15 13 18 18 O 1.42731 * 109.34086 * 65.00288 * 16 15 13 19 19 C 1.43214 * 113.11744 * 172.01071 * 18 16 15 20 20 C 1.52962 * 108.48102 * 289.28552 * 19 18 16 21 21 C 1.50742 * 109.76658 * 49.16290 * 20 19 18 22 22 C 1.38604 * 118.76574 * 163.19537 * 21 20 19 23 23 C 1.38070 * 120.27749 * 179.79862 * 22 21 20 24 24 C 1.38260 * 119.86141 * 359.97438 * 23 22 21 25 25 C 1.38055 * 119.89733 * 0.09627 * 24 23 22 26 26 C 1.37905 * 121.35490 * 343.13864 * 21 20 19 27 27 C 1.46493 * 120.00511 * 140.53710 * 9 7 2 28 28 C 1.53001 * 117.49886 * 3.28112 * 27 9 7 29 29 C 1.52997 * 60.00347 * 252.51625 * 28 27 9 30 30 H 0.97005 * 119.99656 * 355.01418 * 1 2 3 31 31 H 1.08998 * 109.47200 * 150.00538 * 10 9 7 32 32 H 1.08999 * 109.47197 * 30.00446 * 10 9 7 33 33 H 1.09004 * 109.47228 * 60.00074 * 11 10 9 34 34 H 1.08999 * 109.47314 * 300.00200 * 11 10 9 35 35 H 0.97005 * 119.99713 * 0.02562 * 12 11 10 36 36 H 1.08996 * 109.47584 * 300.00014 * 15 13 12 37 37 H 1.08998 * 109.47266 * 60.00827 * 15 13 12 38 38 H 1.09003 * 109.63894 * 48.98656 * 19 18 16 39 39 H 1.09002 * 109.63275 * 169.38320 * 19 18 16 40 40 H 1.08998 * 109.42618 * 169.25722 * 20 19 18 41 41 H 1.09009 * 109.42426 * 289.13198 * 20 19 18 42 42 H 1.07995 * 119.85883 * 359.79831 * 22 21 20 43 43 H 1.07995 * 120.06337 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.04330 * 180.12067 * 24 23 22 45 45 H 1.07995 * 119.84407 * 179.97438 * 25 24 23 46 46 H 1.08997 * 115.55515 * 148.99068 * 27 9 7 47 47 H 1.09006 * 117.49464 * 0.02562 * 28 27 9 48 48 H 1.08998 * 117.50057 * 145.02120 * 28 27 9 49 49 H 1.09000 * 117.49845 * 252.51311 * 29 28 27 50 50 H 1.08995 * 117.50488 * 107.48846 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0427 -1.2296 -0.3162 9 7 1.3858 -2.3535 0.3991 10 6 0.4640 -2.3295 1.5376 11 6 1.2394 -2.6056 2.8274 12 7 0.3178 -2.5810 3.9660 13 6 0.7808 -2.8005 5.2126 14 8 1.9604 -3.0179 5.3918 15 6 -0.1672 -2.7747 6.3837 16 6 0.6082 -3.0508 7.6735 17 1 1.1566 -3.9872 7.5715 18 8 1.5297 -1.9865 7.9082 19 6 2.1700 -2.0686 9.1866 20 6 1.1366 -1.7481 10.2679 21 6 -0.1121 -2.5601 10.0365 22 6 -1.0232 -2.6925 11.0726 23 6 -2.1793 -3.4258 10.8936 24 6 -2.4294 -4.0302 9.6755 25 6 -1.5218 -3.9000 8.6434 26 6 -0.3595 -3.1657 8.8225 27 6 1.6394 -3.6091 -0.3116 28 6 2.6697 -3.5851 -1.4425 29 6 1.1793 -3.7018 -1.7679 30 1 -0.4850 0.8369 0.0730 31 1 -0.3003 -3.0947 1.4024 32 1 -0.0097 -1.3499 1.6010 33 1 2.0039 -1.8404 2.9627 34 1 1.7131 -3.5852 2.7640 35 1 -0.6258 -2.4075 3.8225 36 1 -0.6398 -1.7945 6.4472 37 1 -0.9324 -3.5390 6.2488 38 1 2.5580 -3.0760 9.3380 39 1 2.9883 -1.3502 9.2333 40 1 1.5498 -1.9896 11.2472 41 1 0.8900 -0.6869 10.2304 42 1 -0.8279 -2.2201 12.0239 43 1 -2.8870 -3.5264 11.7031 44 1 -3.3337 -4.6028 9.5316 45 1 -1.7178 -4.3727 7.6925 46 1 1.5777 -4.5131 0.2942 47 1 3.1591 -2.6350 -1.6573 48 1 3.2862 -4.4733 -1.5807 49 1 0.8152 -4.6670 -2.1202 50 1 0.6879 -2.8287 -2.1971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567454097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:05 Heat of formation + Delta-G solvation = -30.079623 kcal Electronic energy + Delta-G solvation = -29673.658006 eV Core-core repulsion = 25666.244266 eV Total energy + Delta-G solvation = -4007.413741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.55652 -40.37498 -38.82726 -38.40067 -36.26096 -34.94007 -34.74317 -33.22554 -32.68177 -31.04274 -29.94538 -28.76144 -26.37418 -25.24436 -24.70867 -23.49690 -22.94024 -22.63986 -21.59719 -21.20065 -20.98811 -18.65317 -18.17136 -17.76925 -17.36549 -17.22887 -16.99597 -16.64308 -16.37638 -16.23488 -16.03258 -15.63730 -15.29890 -15.06268 -14.71529 -14.49164 -14.41327 -14.32103 -14.08100 -13.75730 -13.46764 -13.34337 -13.23294 -13.01224 -12.94009 -12.65236 -12.63463 -12.49040 -12.37233 -12.12216 -11.94065 -11.85648 -11.65183 -11.55111 -11.35682 -10.98498 -10.83394 -10.55988 -10.52073 -9.97656 -9.69897 -9.54086 -8.53713 -7.83486 -5.54449 0.36290 0.44925 1.40427 1.45419 1.54041 1.72849 2.22444 2.48785 2.73424 2.87226 3.14147 3.40152 3.49015 3.63631 3.66906 3.82049 3.90315 4.03073 4.13881 4.23441 4.29438 4.30567 4.31312 4.37262 4.43222 4.44631 4.53236 4.59529 4.61622 4.64850 4.68135 4.81444 4.82883 4.88772 4.95183 4.96604 5.04926 5.08800 5.17229 5.24970 5.34651 5.50779 5.52016 5.56211 5.60871 5.63725 5.66533 5.74138 6.08350 6.20730 6.44222 6.67474 7.12331 7.36101 7.79100 8.30828 9.06696 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.002271 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.474970 B =12324.338954 C =12987.534175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.027 4.027 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.263 4.263 8 H 0.054 0.946 9 N -0.566 5.566 10 C 0.150 3.850 11 C 0.122 3.878 12 N -0.716 5.716 13 C 0.507 3.493 14 O -0.580 6.580 15 C -0.123 4.123 16 C 0.149 3.851 17 H 0.062 0.938 18 O -0.388 6.388 19 C 0.052 3.948 20 C -0.110 4.110 21 C -0.089 4.089 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.118 4.118 26 C -0.131 4.131 27 C 0.099 3.901 28 C -0.185 4.185 29 C -0.211 4.211 30 H 0.253 0.747 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.047 0.953 35 H 0.412 0.588 36 H 0.111 0.889 37 H 0.143 0.857 38 H 0.053 0.947 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.141 0.859 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.110 0.890 49 H 0.103 0.897 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.686 -8.829 22.546 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.225 4.225 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.393 4.393 8 H 0.072 0.928 9 N -0.284 5.284 10 C 0.023 3.977 11 C -0.004 4.004 12 N -0.368 5.368 13 C 0.294 3.706 14 O -0.460 6.460 15 C -0.162 4.162 16 C 0.091 3.909 17 H 0.079 0.921 18 O -0.308 6.308 19 C -0.025 4.025 20 C -0.147 4.147 21 C -0.089 4.089 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.136 4.136 26 C -0.131 4.131 27 C -0.009 4.009 28 C -0.223 4.223 29 C -0.251 4.251 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.248 0.752 36 H 0.129 0.871 37 H 0.161 0.839 38 H 0.071 0.929 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.159 0.841 46 H 0.129 0.871 47 H 0.092 0.908 48 H 0.128 0.872 49 H 0.122 0.878 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.920 -8.679 22.454 24.790 hybrid contribution 0.175 1.131 -0.308 1.185 sum -5.745 -7.548 22.146 24.092 Atomic orbital electron populations 1.70144 1.06298 1.26442 1.52047 1.25785 0.95739 1.01103 0.99894 0.85547 0.79004 0.80957 0.76981 1.19755 1.21507 1.21462 1.19157 0.93152 0.86238 1.40797 0.92808 1.43387 1.51216 1.03788 1.29974 1.20866 0.91029 1.01975 0.83785 1.21759 0.92971 0.99246 0.86462 1.45944 1.12770 1.71999 1.06103 1.21115 0.89224 0.75583 0.84658 1.90678 1.19311 1.50361 1.85642 1.21850 0.97807 1.07095 0.89464 1.20476 0.88316 0.90722 0.91402 0.92068 1.88144 1.57882 1.48361 1.36367 1.22769 0.95229 1.02104 0.82370 1.21142 0.92990 1.00142 1.00458 1.19773 0.97451 0.98243 0.93438 1.21336 0.94315 0.99778 0.98923 1.21497 0.97302 0.96809 0.98206 1.21442 0.99952 0.99950 0.93077 1.21327 0.93164 0.98524 1.00569 1.20210 0.97159 1.00553 0.95196 1.21543 1.02167 0.90017 0.87138 1.23034 0.92206 1.02257 1.04826 1.23243 0.97043 1.01146 1.03701 0.93789 0.93332 0.90905 0.95459 0.93512 0.75174 0.87054 0.83929 0.92853 0.87594 0.87540 0.89618 0.84117 0.83611 0.83564 0.84127 0.87099 0.90832 0.87224 0.87846 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.90 11.50 21.65 0.25 -50.65 16 2 C -0.03 -1.47 4.98 84.86 0.42 -1.04 16 3 Si 0.95 44.82 29.60 68.60 2.03 46.85 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 7 C -0.26 -14.22 8.47 84.03 0.71 -13.51 16 8 H 0.05 2.98 6.74 -2.91 -0.02 2.96 16 9 N -0.57 -27.52 2.75 -678.03 -1.86 -29.38 16 10 C 0.15 6.61 5.45 86.38 0.47 7.08 16 11 C 0.12 4.99 6.00 86.38 0.52 5.51 16 12 N -0.72 -23.30 5.56 -463.05 -2.57 -25.88 16 13 C 0.51 16.74 7.71 87.66 0.68 17.42 16 14 O -0.58 -24.58 15.41 10.89 0.17 -24.41 16 15 C -0.12 -2.83 5.11 29.85 0.15 -2.68 16 16 C 0.15 3.77 2.28 29.84 0.07 3.84 16 17 H 0.06 1.70 7.94 -2.39 -0.02 1.68 16 18 O -0.39 -11.58 9.66 -135.06 -1.30 -12.88 16 19 C 0.05 1.13 6.85 71.97 0.49 1.62 16 20 C -0.11 -1.87 6.00 29.85 0.18 -1.69 16 21 C -0.09 -1.69 5.78 -19.84 -0.11 -1.81 16 22 C -0.13 -1.88 9.67 22.32 0.22 -1.67 16 23 C -0.12 -1.57 10.05 22.23 0.22 -1.35 16 24 C -0.13 -1.72 10.05 22.23 0.22 -1.49 16 25 C -0.12 -1.94 9.08 22.32 0.20 -1.74 16 26 C -0.13 -2.71 5.46 -19.86 -0.11 -2.82 16 27 C 0.10 4.11 6.56 45.00 0.30 4.41 16 28 C -0.19 -7.11 9.80 30.59 0.30 -6.81 16 29 C -0.21 -8.29 10.36 30.60 0.32 -7.97 16 30 H 0.25 13.71 8.32 -92.70 -0.77 12.94 16 31 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 32 H 0.07 3.64 5.59 -2.39 -0.01 3.63 16 33 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.41 10.80 8.47 -92.70 -0.79 10.01 16 36 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.14 2.17 6.30 -2.39 -0.02 2.16 16 38 H 0.05 1.13 8.07 -2.39 -0.02 1.11 16 39 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.14 1.75 6.45 -2.91 -0.02 1.73 16 46 H 0.11 4.02 8.14 -2.39 -0.02 4.01 16 47 H 0.07 3.19 6.46 -2.38 -0.02 3.18 16 48 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 49 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 50 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -72.18 403.45 2.11 -70.07 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.16 Total: 31.00 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 5.25 Total: -4.71 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -4.19 Total: -105.91 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.14 Total: -37.30 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -72.18 2.11 -70.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567454097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.986 kcal (2) G-P(sol) polarization free energy of solvation -72.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds