Wall clock time and date at job start Wed Apr 1 2020 03:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00097 * 2 1 4 4 H 1.48495 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46961 * 300.00335 * 3 2 1 6 6 H 1.48500 * 109.47155 * 60.00181 * 3 2 1 7 7 C 1.38812 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00044 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99927 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46839 * 184.95529 * 10 9 7 12 12 H 1.08996 * 109.87306 * 54.45852 * 11 10 9 13 13 C 1.54323 * 110.00849 * 293.36203 * 11 10 9 14 14 C 1.55157 * 102.93812 * 218.31858 * 13 11 10 15 15 C 1.54903 * 101.58567 * 35.50489 * 14 13 11 16 16 N 1.47023 * 109.87972 * 175.47690 * 11 10 9 17 17 C 1.34777 * 125.64564 * 298.54536 * 16 11 10 18 18 O 1.21274 * 120.00447 * 4.75994 * 17 16 11 19 19 C 1.50700 * 119.99488 * 184.75811 * 17 16 11 20 20 O 1.42901 * 109.46813 * 179.97438 * 19 17 16 21 21 C 1.42907 * 113.99809 * 180.02562 * 20 19 17 22 22 C 1.50697 * 109.47116 * 180.02562 * 21 20 19 23 23 C 1.32567 * 120.00276 * 134.41934 * 22 21 20 24 24 C 1.47817 * 119.99635 * 8.10655 * 23 22 21 25 25 C 1.39529 * 120.14130 * 219.27300 * 24 23 22 26 26 C 1.37973 * 119.85733 * 179.76372 * 25 24 23 27 27 C 1.38352 * 120.14123 * 0.49575 * 26 25 24 28 28 C 1.38348 * 120.28282 * 359.76270 * 27 26 25 29 29 C 1.37976 * 120.14114 * 359.97438 * 28 27 26 30 30 H 0.97001 * 120.00070 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99479 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.46987 * 64.95627 * 10 9 7 33 33 H 1.09000 * 109.46713 * 304.95458 * 10 9 7 34 34 H 1.08998 * 110.72106 * 336.68038 * 13 11 10 35 35 H 1.09000 * 110.72200 * 99.95755 * 13 11 10 36 36 H 1.09000 * 111.00610 * 277.42805 * 14 13 11 37 37 H 1.09001 * 111.03247 * 153.59456 * 14 13 11 38 38 H 1.08998 * 110.36740 * 204.15197 * 15 14 13 39 39 H 1.08998 * 110.46371 * 81.86961 * 15 14 13 40 40 H 1.09002 * 109.47615 * 300.00662 * 19 17 16 41 41 H 1.09005 * 109.46847 * 60.00691 * 19 17 16 42 42 H 1.09001 * 109.46879 * 300.00210 * 21 20 19 43 43 H 1.09002 * 109.47124 * 59.99966 * 21 20 19 44 44 H 1.07999 * 120.00225 * 314.42093 * 22 21 20 45 45 H 1.07994 * 120.00766 * 188.10768 * 23 22 21 46 46 H 1.07999 * 120.07275 * 359.97438 * 25 24 23 47 47 H 1.08003 * 119.93598 * 180.23373 * 26 25 24 48 48 H 1.07992 * 119.85824 * 179.74212 * 27 26 25 49 49 H 1.07993 * 119.92877 * 179.97438 * 28 27 26 50 50 H 1.07997 * 120.06725 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0685 -4.8171 -0.1251 12 1 0.4390 -4.6744 -1.0034 13 6 0.1909 -4.9009 1.1415 14 6 0.0478 -6.4297 1.3644 15 6 1.4380 -6.9416 0.9117 16 7 1.7994 -6.0880 -0.2348 17 6 2.6580 -6.4178 -1.2199 18 8 2.9481 -5.6026 -2.0696 19 6 3.2577 -7.7996 -1.2653 20 8 4.1284 -7.9040 -2.3936 21 6 4.7519 -9.1826 -2.5302 22 6 5.6432 -9.1796 -3.7454 23 6 6.8667 -9.6845 -3.6713 24 6 7.2946 -10.4098 -2.4564 25 6 8.5887 -10.2450 -1.9614 26 6 8.9803 -10.9210 -0.8241 27 6 8.0962 -11.7687 -0.1807 28 6 6.8134 -11.9405 -0.6695 29 6 6.4077 -11.2661 -1.8028 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6164 -3.7539 0.9305 33 1 2.7496 -3.6770 -0.8428 34 1 0.6914 -4.4328 1.9891 35 1 -0.7831 -4.4439 0.9669 36 1 -0.7434 -6.8434 0.7392 37 1 -0.1288 -6.6569 2.4158 38 1 1.3760 -7.9851 0.6030 39 1 2.1663 -6.8268 1.7144 40 1 3.8234 -7.9805 -0.3513 41 1 2.4612 -8.5386 -1.3520 42 1 5.3489 -9.3924 -1.6427 43 1 3.9862 -9.9501 -2.6428 44 1 5.2853 -8.7660 -4.6766 45 1 7.5509 -9.5661 -4.4984 46 1 9.2812 -9.5872 -2.4653 47 1 9.9805 -10.7916 -0.4377 48 1 8.4089 -12.2988 0.7067 49 1 6.1282 -12.6039 -0.1630 50 1 5.4062 -11.4014 -2.1836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569544331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:51 Heat of formation + Delta-G solvation = -13.550786 kcal Electronic energy + Delta-G solvation = -28995.523975 eV Core-core repulsion = 24988.826978 eV Total energy + Delta-G solvation = -4006.696997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.12766 -39.75923 -38.20623 -36.98800 -34.94249 -34.45943 -31.85750 -31.41181 -31.27055 -30.28985 -28.99109 -27.94138 -26.08139 -25.01926 -23.08240 -22.88657 -22.70299 -22.01226 -20.71086 -19.73102 -18.86826 -17.66290 -16.98342 -16.83655 -16.53450 -16.52412 -16.24830 -15.79041 -15.17015 -14.91906 -14.74751 -14.43008 -14.00132 -13.79972 -13.75883 -13.66301 -13.30689 -13.20680 -12.96525 -12.74562 -12.69761 -12.60840 -12.28634 -12.11464 -11.90291 -11.51476 -11.46945 -11.19937 -11.07165 -10.87176 -10.80023 -10.55048 -10.38984 -10.36079 -9.96024 -9.80400 -9.70849 -9.48373 -9.27107 -8.78156 -8.65535 -8.43283 -6.83334 -5.69178 -2.96843 0.63501 1.01696 1.89361 2.75181 2.78628 3.44730 3.49387 3.55186 3.57897 3.80785 4.35182 4.45141 4.50830 4.58243 4.58380 4.68939 4.72362 4.76422 4.85123 4.92571 4.95663 4.98444 5.03073 5.07482 5.10468 5.15313 5.37731 5.40916 5.42384 5.56643 5.57890 5.65465 5.66640 5.80547 5.92561 5.95281 6.00416 6.06526 6.10184 6.13244 6.19082 6.22558 6.35424 6.44214 6.54857 6.60453 6.84182 6.91368 7.08283 7.66586 7.80099 8.35798 8.50291 9.61081 10.17704 10.53567 11.54089 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002012 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.887309 B =13912.467058 C =14891.046014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.144 3.856 11 C 0.133 3.867 12 H 0.077 0.923 13 C -0.121 4.121 14 C -0.134 4.134 15 C 0.098 3.902 16 N -0.614 5.614 17 C 0.524 3.476 18 O -0.504 6.504 19 C 0.052 3.948 20 O -0.358 6.358 21 C 0.080 3.920 22 C -0.129 4.129 23 C -0.117 4.117 24 C -0.059 4.059 25 C -0.107 4.107 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.121 4.121 29 C -0.115 4.115 30 H 0.253 0.747 31 H 0.383 0.617 32 H 0.014 0.986 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.216 -30.728 0.655 32.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.016 3.984 11 C 0.030 3.970 12 H 0.095 0.905 13 C -0.160 4.160 14 C -0.172 4.172 15 C -0.025 4.025 16 N -0.351 5.351 17 C 0.311 3.689 18 O -0.377 6.377 19 C -0.028 4.028 20 O -0.276 6.276 21 C 0.004 3.996 22 C -0.147 4.147 23 C -0.135 4.135 24 C -0.059 4.059 25 C -0.125 4.125 26 C -0.137 4.137 27 C -0.139 4.139 28 C -0.139 4.139 29 C -0.133 4.133 30 H 0.063 0.937 31 H 0.216 0.784 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.630 -30.040 -0.029 31.866 hybrid contribution 0.105 0.681 0.222 0.724 sum 10.735 -29.359 0.194 31.261 Atomic orbital electron populations 1.69666 1.05046 1.25401 1.58386 1.24720 0.95565 0.97612 1.03322 0.86096 0.78840 0.84097 0.77098 1.20577 1.21888 1.21944 1.19277 0.91084 0.84008 1.41841 0.91202 1.42217 1.05727 0.99770 1.89593 1.20992 0.93732 0.85071 0.98631 1.21842 0.93356 0.83255 0.98556 0.90516 1.22683 1.00657 0.94973 0.97639 1.22788 0.95868 0.96703 1.01809 1.22357 0.97073 0.94298 0.88817 1.48464 1.44590 1.17917 1.24138 1.19762 0.79018 0.88954 0.81194 1.90789 1.58266 1.50767 1.37916 1.22162 0.94250 0.95671 0.90707 1.88046 1.61281 1.32267 1.46011 1.21912 0.94998 0.85604 0.97111 1.23042 0.94101 0.99065 0.98489 1.21676 0.95608 0.99492 0.96753 1.19137 0.94023 0.97212 0.95485 1.21310 0.95450 0.99204 0.96536 1.21138 0.99827 0.96956 0.95814 1.21238 0.93956 0.98730 0.99942 1.21104 0.96437 0.99774 0.96596 1.21420 0.99261 0.96710 0.95903 0.93673 0.78369 0.96794 0.94062 0.89857 0.89671 0.90747 0.89932 0.91058 0.91192 0.90523 0.90533 0.91491 0.92291 0.85422 0.85298 0.85714 0.85888 0.86052 0.85870 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.04 13.06 55.49 0.72 -28.32 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 23.40 29.55 -169.99 -5.02 18.37 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 7 C -0.23 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.73 -19.54 5.45 -59.91 -0.33 -19.87 16 10 C 0.14 3.26 5.65 -4.04 -0.02 3.24 16 11 C 0.13 2.36 2.98 -66.95 -0.20 2.16 16 12 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 13 C -0.12 -1.75 6.08 -24.90 -0.15 -1.91 16 14 C -0.13 -1.34 7.08 -24.59 -0.17 -1.51 16 15 C 0.10 0.99 6.74 -2.53 -0.02 0.97 16 16 N -0.61 -9.17 3.07 -163.02 -0.50 -9.67 16 17 C 0.52 8.68 7.74 -10.99 -0.09 8.59 16 18 O -0.50 -11.07 15.29 -14.35 -0.22 -11.29 16 19 C 0.05 0.61 5.35 36.01 0.19 0.81 16 20 O -0.36 -4.95 9.86 -55.14 -0.54 -5.49 16 21 C 0.08 0.77 4.64 36.00 0.17 0.94 16 22 C -0.13 -1.20 9.83 -36.22 -0.36 -1.56 16 23 C -0.12 -0.97 9.78 -37.57 -0.37 -1.34 16 24 C -0.06 -0.50 5.04 -105.01 -0.53 -1.02 16 25 C -0.11 -0.85 9.79 -39.20 -0.38 -1.24 16 26 C -0.12 -0.85 10.03 -39.64 -0.40 -1.25 16 27 C -0.12 -0.81 10.04 -39.50 -0.40 -1.21 16 28 C -0.12 -0.82 10.03 -39.64 -0.40 -1.22 16 29 C -0.12 -0.87 7.46 -39.19 -0.29 -1.16 16 30 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.38 10.47 7.44 -40.82 -0.30 10.17 16 32 H 0.01 0.32 8.04 -51.93 -0.42 -0.10 16 33 H 0.04 1.06 6.56 -51.93 -0.34 0.72 16 34 H 0.08 1.29 7.79 -51.93 -0.40 0.89 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.51 7.47 -51.93 -0.39 0.12 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.66 7.95 -51.93 -0.41 0.25 16 42 H 0.07 0.62 5.38 -51.93 -0.28 0.34 16 43 H 0.06 0.44 7.71 -51.93 -0.40 0.04 16 44 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 45 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 48 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 49 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 50 H 0.12 0.77 6.32 -52.49 -0.33 0.44 16 LS Contribution 409.35 15.07 6.17 6.17 Total: -1.00 -37.19 409.35 -11.28 -48.47 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.90 Total: 5.93 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -3.66 Total: -4.29 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.10 Total: -57.86 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.76 Total: -16.79 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.19 -11.28 -48.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569544331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.917 kcal (2) G-P(sol) polarization free energy of solvation -37.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds