Wall clock time and date at job start Wed Apr 1 2020 03:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00097 * 2 1 4 4 H 1.48495 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46961 * 300.00335 * 3 2 1 6 6 H 1.48500 * 109.47155 * 60.00181 * 3 2 1 7 7 C 1.38812 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00044 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99927 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46839 * 184.95529 * 10 9 7 12 12 H 1.08996 * 109.87306 * 54.45852 * 11 10 9 13 13 C 1.54323 * 110.00849 * 293.36203 * 11 10 9 14 14 C 1.55157 * 102.93812 * 218.31858 * 13 11 10 15 15 C 1.54903 * 101.58567 * 35.50489 * 14 13 11 16 16 N 1.47023 * 109.87972 * 175.47690 * 11 10 9 17 17 C 1.34777 * 125.64564 * 298.54536 * 16 11 10 18 18 O 1.21274 * 120.00447 * 4.75994 * 17 16 11 19 19 C 1.50700 * 119.99488 * 184.75811 * 17 16 11 20 20 O 1.42901 * 109.46813 * 179.97438 * 19 17 16 21 21 C 1.42907 * 113.99809 * 180.02562 * 20 19 17 22 22 C 1.50697 * 109.47116 * 180.02562 * 21 20 19 23 23 C 1.32567 * 120.00276 * 134.41934 * 22 21 20 24 24 C 1.47817 * 119.99635 * 8.10655 * 23 22 21 25 25 C 1.39529 * 120.14130 * 219.27300 * 24 23 22 26 26 C 1.37973 * 119.85733 * 179.76372 * 25 24 23 27 27 C 1.38352 * 120.14123 * 0.49575 * 26 25 24 28 28 C 1.38348 * 120.28282 * 359.76270 * 27 26 25 29 29 C 1.37976 * 120.14114 * 359.97438 * 28 27 26 30 30 H 0.97001 * 120.00070 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99479 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.46987 * 64.95627 * 10 9 7 33 33 H 1.09000 * 109.46713 * 304.95458 * 10 9 7 34 34 H 1.08998 * 110.72106 * 336.68038 * 13 11 10 35 35 H 1.09000 * 110.72200 * 99.95755 * 13 11 10 36 36 H 1.09000 * 111.00610 * 277.42805 * 14 13 11 37 37 H 1.09001 * 111.03247 * 153.59456 * 14 13 11 38 38 H 1.08998 * 110.36740 * 204.15197 * 15 14 13 39 39 H 1.08998 * 110.46371 * 81.86961 * 15 14 13 40 40 H 1.09002 * 109.47615 * 300.00662 * 19 17 16 41 41 H 1.09005 * 109.46847 * 60.00691 * 19 17 16 42 42 H 1.09001 * 109.46879 * 300.00210 * 21 20 19 43 43 H 1.09002 * 109.47124 * 59.99966 * 21 20 19 44 44 H 1.07999 * 120.00225 * 314.42093 * 22 21 20 45 45 H 1.07994 * 120.00766 * 188.10768 * 23 22 21 46 46 H 1.07999 * 120.07275 * 359.97438 * 25 24 23 47 47 H 1.08003 * 119.93598 * 180.23373 * 26 25 24 48 48 H 1.07992 * 119.85824 * 179.74212 * 27 26 25 49 49 H 1.07993 * 119.92877 * 179.97438 * 28 27 26 50 50 H 1.07997 * 120.06725 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0685 -4.8171 -0.1251 12 1 0.4390 -4.6744 -1.0034 13 6 0.1909 -4.9009 1.1415 14 6 0.0478 -6.4297 1.3644 15 6 1.4380 -6.9416 0.9117 16 7 1.7994 -6.0880 -0.2348 17 6 2.6580 -6.4178 -1.2199 18 8 2.9481 -5.6026 -2.0696 19 6 3.2577 -7.7996 -1.2653 20 8 4.1284 -7.9040 -2.3936 21 6 4.7519 -9.1826 -2.5302 22 6 5.6432 -9.1796 -3.7454 23 6 6.8667 -9.6845 -3.6713 24 6 7.2946 -10.4098 -2.4564 25 6 8.5887 -10.2450 -1.9614 26 6 8.9803 -10.9210 -0.8241 27 6 8.0962 -11.7687 -0.1807 28 6 6.8134 -11.9405 -0.6695 29 6 6.4077 -11.2661 -1.8028 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6164 -3.7539 0.9305 33 1 2.7496 -3.6770 -0.8428 34 1 0.6914 -4.4328 1.9891 35 1 -0.7831 -4.4439 0.9669 36 1 -0.7434 -6.8434 0.7392 37 1 -0.1288 -6.6569 2.4158 38 1 1.3760 -7.9851 0.6030 39 1 2.1663 -6.8268 1.7144 40 1 3.8234 -7.9805 -0.3513 41 1 2.4612 -8.5386 -1.3520 42 1 5.3489 -9.3924 -1.6427 43 1 3.9862 -9.9501 -2.6428 44 1 5.2853 -8.7660 -4.6766 45 1 7.5509 -9.5661 -4.4984 46 1 9.2812 -9.5872 -2.4653 47 1 9.9805 -10.7916 -0.4377 48 1 8.4089 -12.2988 0.7067 49 1 6.1282 -12.6039 -0.1630 50 1 5.4062 -11.4014 -2.1836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569544331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:50 Heat of formation + Delta-G solvation = -36.633515 kcal Electronic energy + Delta-G solvation = -28996.524917 eV Core-core repulsion = 24988.826978 eV Total energy + Delta-G solvation = -4007.697939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.32029 -40.34362 -39.17649 -38.17743 -36.45606 -35.59867 -33.60105 -32.70514 -31.92476 -30.95074 -30.46016 -28.92229 -26.84047 -26.75560 -24.74318 -23.48961 -23.41893 -23.24288 -21.88814 -20.53363 -20.07427 -19.14354 -18.47190 -17.77377 -17.49663 -17.37970 -17.16663 -16.60074 -16.36122 -16.09210 -15.78878 -15.55917 -15.39677 -15.07451 -14.89786 -14.75789 -14.47293 -14.27615 -14.06682 -13.79590 -13.69936 -13.50695 -13.36277 -13.18428 -13.00560 -12.92195 -12.78307 -12.53633 -12.19183 -12.05865 -11.96167 -11.93653 -11.77017 -11.68670 -11.58466 -11.10285 -11.05845 -10.79017 -10.49647 -9.79860 -9.71407 -9.23658 -9.07295 -8.00762 -5.30533 0.06495 0.50263 1.24350 1.42420 1.44845 1.53484 1.55281 1.72640 2.51916 2.87574 3.00198 3.31461 3.45366 3.64657 3.77142 3.84005 3.92384 3.98648 4.07494 4.08901 4.12331 4.18372 4.20695 4.26719 4.31203 4.34358 4.34646 4.39579 4.52392 4.59800 4.62389 4.72268 4.81721 4.84015 4.94087 5.03730 5.05579 5.13227 5.15877 5.16398 5.34521 5.39167 5.40278 5.41846 5.45428 5.62847 5.65323 5.75826 6.06704 6.11578 6.21421 6.52597 7.13717 7.27705 7.98499 8.27181 9.22604 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002012 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.887309 B =13912.467058 C =14891.046014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.736 5.736 10 C 0.151 3.849 11 C 0.137 3.863 12 H 0.050 0.950 13 C -0.119 4.119 14 C -0.118 4.118 15 C 0.091 3.909 16 N -0.611 5.611 17 C 0.512 3.488 18 O -0.576 6.576 19 C 0.061 3.939 20 O -0.399 6.399 21 C 0.082 3.918 22 C -0.152 4.152 23 C -0.109 4.109 24 C -0.080 4.080 25 C -0.123 4.123 26 C -0.130 4.130 27 C -0.126 4.126 28 C -0.125 4.125 29 C -0.121 4.121 30 H 0.254 0.746 31 H 0.377 0.623 32 H 0.016 0.984 33 H 0.005 0.995 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.139 0.861 46 H 0.129 0.871 47 H 0.138 0.862 48 H 0.142 0.858 49 H 0.146 0.854 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.361 -33.537 2.669 35.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.380 5.380 10 C 0.023 3.977 11 C 0.033 3.967 12 H 0.068 0.932 13 C -0.157 4.157 14 C -0.155 4.155 15 C -0.030 4.030 16 N -0.346 5.346 17 C 0.301 3.699 18 O -0.455 6.455 19 C -0.018 4.018 20 O -0.318 6.318 21 C 0.007 3.993 22 C -0.170 4.170 23 C -0.126 4.126 24 C -0.080 4.080 25 C -0.141 4.141 26 C -0.148 4.148 27 C -0.144 4.144 28 C -0.143 4.143 29 C -0.139 4.139 30 H 0.063 0.937 31 H 0.210 0.790 32 H 0.033 0.967 33 H 0.023 0.977 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.136 0.864 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.139 0.861 45 H 0.156 0.844 46 H 0.147 0.853 47 H 0.156 0.844 48 H 0.159 0.841 49 H 0.164 0.836 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.777 -32.914 2.029 34.693 hybrid contribution 0.122 1.507 -0.400 1.564 sum 10.899 -31.407 1.629 33.284 Atomic orbital electron populations 1.69806 1.06389 1.26255 1.59025 1.25580 0.96592 1.01006 1.03179 0.85033 0.77885 0.79460 0.77110 1.19715 1.21730 1.20969 1.19566 0.91136 0.85485 1.42042 0.91779 1.42324 1.05566 1.00622 1.89457 1.20966 0.94230 0.85666 0.96813 1.21567 0.92434 0.83282 0.99396 0.93186 1.22595 0.99101 0.98998 0.95027 1.22814 0.96307 0.92264 1.04140 1.22780 0.97240 0.95628 0.87334 1.48589 1.43601 1.17254 1.25185 1.20873 0.78376 0.90456 0.80188 1.90753 1.60812 1.53197 1.40705 1.22241 0.95443 0.92693 0.91421 1.88004 1.62063 1.34756 1.46999 1.22058 0.95528 0.84524 0.97220 1.23087 0.94885 1.00447 0.98606 1.21838 0.95239 0.98417 0.97153 1.19293 0.94638 0.98131 0.95908 1.21505 0.95617 0.99791 0.97231 1.21407 1.00811 0.96920 0.95622 1.21577 0.93964 0.98393 1.00450 1.21426 0.96886 0.99699 0.96309 1.21621 0.99647 0.96519 0.96120 0.93684 0.78995 0.96653 0.97735 0.91055 0.90382 0.89453 0.86756 0.86604 0.89790 0.87611 0.86429 0.90976 0.89776 0.86086 0.84381 0.85327 0.84422 0.84051 0.83618 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.98 13.06 21.65 0.28 -60.69 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.98 48.77 29.55 68.60 2.03 50.80 16 4 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.25 -15.36 9.99 84.03 0.84 -14.52 16 8 H 0.06 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -41.34 5.45 -343.44 -1.87 -43.22 16 10 C 0.15 7.22 5.65 86.38 0.49 7.71 16 11 C 0.14 5.04 2.98 45.34 0.13 5.18 16 12 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 13 C -0.12 -3.37 6.08 31.78 0.19 -3.17 16 14 C -0.12 -1.92 7.08 31.98 0.23 -1.69 16 15 C 0.09 1.47 6.74 86.85 0.58 2.06 16 16 N -0.61 -17.71 3.07 -788.07 -2.42 -20.12 16 17 C 0.51 16.95 7.74 87.66 0.68 17.63 16 18 O -0.58 -26.85 15.29 16.03 0.25 -26.60 16 19 C 0.06 1.29 5.35 71.24 0.38 1.67 16 20 O -0.40 -10.77 9.86 -129.94 -1.28 -12.05 16 21 C 0.08 1.45 4.64 71.24 0.33 1.78 16 22 C -0.15 -2.82 9.83 24.53 0.24 -2.58 16 23 C -0.11 -1.77 9.78 23.66 0.23 -1.54 16 24 C -0.08 -1.27 5.04 -20.12 -0.10 -1.38 16 25 C -0.12 -1.89 9.79 22.52 0.22 -1.66 16 26 C -0.13 -1.67 10.03 22.23 0.22 -1.44 16 27 C -0.13 -1.41 10.04 22.32 0.22 -1.18 16 28 C -0.13 -1.37 10.03 22.23 0.22 -1.14 16 29 C -0.12 -1.59 7.46 22.52 0.17 -1.42 16 30 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.38 21.64 7.44 -92.71 -0.69 20.95 16 32 H 0.02 0.73 8.04 -2.39 -0.02 0.71 16 33 H 0.00 0.25 6.56 -2.39 -0.02 0.24 16 34 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.12 0.95 7.47 -2.39 -0.02 0.93 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.12 1.51 7.95 -2.38 -0.02 1.49 16 42 H 0.07 1.19 5.38 -2.39 -0.01 1.18 16 43 H 0.08 1.02 7.71 -2.39 -0.02 1.00 16 44 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 45 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 46 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 47 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 48 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 49 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 50 H 0.14 1.36 6.32 -2.91 -0.02 1.34 16 Total: -1.00 -86.65 409.35 2.98 -83.67 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.24 Total: 27.78 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.75 Total: 0.44 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -4.01 Total: -124.03 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.04 Total: -38.65 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.80 kcal Total: -86.65 2.98 -83.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569544331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.035 kcal (2) G-P(sol) polarization free energy of solvation -86.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds