Wall clock time and date at job start Wed Apr 1 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99841 * 2 1 4 4 H 1.48497 * 109.47429 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47320 * 299.99886 * 3 2 1 6 6 H 1.48503 * 109.47144 * 59.99779 * 3 2 1 7 7 C 1.38808 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00020 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47009 * 185.05745 * 10 9 7 12 12 H 1.09000 * 110.00016 * 304.67800 * 11 10 9 13 13 C 1.54316 * 109.77271 * 65.83468 * 11 10 9 14 14 C 1.55159 * 102.86438 * 141.88607 * 13 11 10 15 15 C 1.54917 * 101.58102 * 324.30096 * 14 13 11 16 16 N 1.47024 * 109.88164 * 183.58109 * 11 10 9 17 17 C 1.34773 * 125.64800 * 61.68082 * 16 11 10 18 18 O 1.21280 * 120.00044 * 354.84974 * 17 16 11 19 19 C 1.50700 * 119.99932 * 174.85096 * 17 16 11 20 20 O 1.42904 * 109.47033 * 180.02562 * 19 17 16 21 21 C 1.42905 * 114.00043 * 180.02562 * 20 19 17 22 22 C 1.50699 * 109.47183 * 179.97438 * 21 20 19 23 23 C 1.32564 * 119.99974 * 135.86220 * 22 21 20 24 24 C 1.47806 * 120.00185 * 7.80621 * 23 22 21 25 25 C 1.39536 * 120.14422 * 214.68269 * 24 23 22 26 26 C 1.37977 * 119.85690 * 179.78869 * 25 24 23 27 27 C 1.38340 * 120.14304 * 0.48720 * 26 25 24 28 28 C 1.38346 * 120.28537 * 359.73888 * 27 26 25 29 29 C 1.37981 * 120.14104 * 0.02774 * 28 27 26 30 30 H 0.96997 * 120.00020 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99700 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46970 * 65.05874 * 10 9 7 33 33 H 1.08995 * 109.47201 * 305.06161 * 10 9 7 34 34 H 1.08995 * 110.92498 * 23.46765 * 13 11 10 35 35 H 1.09002 * 110.59046 * 260.14205 * 13 11 10 36 36 H 1.09006 * 111.00445 * 206.23037 * 14 13 11 37 37 H 1.09002 * 111.00762 * 82.37356 * 14 13 11 38 38 H 1.09002 * 110.36490 * 278.17239 * 15 14 13 39 39 H 1.08991 * 110.36750 * 155.84968 * 15 14 13 40 40 H 1.08991 * 109.47373 * 60.00147 * 19 17 16 41 41 H 1.08999 * 109.46951 * 299.99573 * 19 17 16 42 42 H 1.08998 * 109.46802 * 59.99636 * 21 20 19 43 43 H 1.08997 * 109.46815 * 299.99553 * 21 20 19 44 44 H 1.08005 * 120.00072 * 315.86645 * 22 21 20 45 45 H 1.07999 * 119.99561 * 187.81033 * 23 22 21 46 46 H 1.08004 * 120.06891 * 359.97438 * 25 24 23 47 47 H 1.07996 * 119.93011 * 180.24938 * 26 25 24 48 48 H 1.07992 * 119.85902 * 179.72019 * 27 26 25 49 49 H 1.08000 * 119.93035 * 180.02562 * 28 27 26 50 50 H 1.08004 * 120.07192 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0689 -4.8169 -0.1266 12 1 0.3212 -4.7576 0.6643 13 6 0.3813 -4.7676 -1.5072 14 6 0.2759 -6.2664 -1.8943 15 6 1.5912 -6.8333 -1.3041 16 7 1.7863 -6.0974 -0.0416 17 6 2.4993 -6.5295 1.0173 18 8 2.6661 -5.8023 1.9735 19 6 3.0893 -7.9162 1.0132 20 8 3.7938 -8.1377 2.2366 21 6 4.3954 -9.4302 2.3351 22 6 5.1078 -9.5532 3.6573 23 6 4.9832 -10.6596 4.3770 24 6 4.2907 -11.8359 3.8101 25 6 3.5268 -12.6635 4.6337 26 6 2.8793 -13.7576 4.0975 27 6 2.9944 -14.0405 2.7482 28 6 3.7540 -13.2266 1.9270 29 6 4.4027 -12.1267 2.4500 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0002 32 1 2.6152 -3.7547 0.9324 33 1 2.7511 -3.6762 -0.8406 34 1 0.9933 -4.2253 -2.2278 35 1 -0.6092 -4.3197 -1.4265 36 1 0.2487 -6.3894 -2.9771 37 1 -0.5934 -6.7303 -1.4281 38 1 2.4229 -6.6478 -1.9838 39 1 1.4904 -7.9009 -1.1092 40 1 3.7776 -8.0157 0.1740 41 1 2.2898 -8.6508 0.9166 42 1 5.1112 -9.5605 1.5235 43 1 3.6234 -10.1965 2.2653 44 1 5.7199 -8.7401 4.0187 45 1 5.3876 -10.7013 5.3775 46 1 3.4401 -12.4465 5.6882 47 1 2.2844 -14.3967 4.7332 48 1 2.4893 -14.9006 2.3342 49 1 3.8396 -13.4525 0.8744 50 1 4.9958 -11.4923 1.8080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569544334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:54 Heat of formation + Delta-G solvation = -11.188109 kcal Electronic energy + Delta-G solvation = -28942.631012 eV Core-core repulsion = 24936.036469 eV Total energy + Delta-G solvation = -4006.594543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.13931 -39.79946 -38.21060 -36.99390 -34.97290 -34.46197 -31.85760 -31.45907 -31.27053 -30.27004 -28.99485 -27.95569 -26.15119 -25.02143 -23.09173 -22.90339 -22.66774 -21.99498 -20.71937 -19.77406 -18.88584 -17.69717 -16.99164 -16.79348 -16.65132 -16.52828 -16.02432 -15.91706 -15.22156 -15.01061 -14.53977 -14.41934 -14.18793 -13.80845 -13.71607 -13.59483 -13.28157 -13.20735 -13.00577 -12.81717 -12.76062 -12.59944 -12.27468 -12.10252 -11.92015 -11.47176 -11.42523 -11.18233 -11.06174 -10.87992 -10.80808 -10.54776 -10.43578 -10.40489 -9.97631 -9.83924 -9.71977 -9.49281 -9.27485 -8.77994 -8.64049 -8.43701 -6.83209 -5.69660 -2.97370 0.59614 0.99579 1.91567 2.75002 2.77522 3.43856 3.48572 3.54403 3.56867 3.79461 4.34088 4.43901 4.48497 4.56330 4.59002 4.68195 4.69972 4.75546 4.87622 4.88787 4.94579 4.98383 5.02120 5.05761 5.10897 5.12938 5.38173 5.40362 5.41903 5.54555 5.58296 5.64373 5.64893 5.81525 5.92439 5.93829 5.97447 6.06420 6.10677 6.11304 6.21011 6.21197 6.35059 6.44742 6.55959 6.58859 6.82691 6.90393 7.09256 7.66409 7.78760 8.35363 8.49663 9.60414 10.17400 10.53137 11.53566 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.001871 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.557698 B =14959.518414 C =15989.411202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.144 3.856 11 C 0.133 3.867 12 H 0.076 0.924 13 C -0.119 4.119 14 C -0.135 4.135 15 C 0.098 3.902 16 N -0.614 5.614 17 C 0.524 3.476 18 O -0.505 6.505 19 C 0.052 3.948 20 O -0.358 6.358 21 C 0.078 3.922 22 C -0.128 4.128 23 C -0.118 4.118 24 C -0.058 4.058 25 C -0.107 4.107 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.121 4.121 29 C -0.117 4.117 30 H 0.253 0.747 31 H 0.383 0.617 32 H 0.036 0.964 33 H 0.020 0.980 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.124 0.876 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.934 -32.552 0.399 33.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.363 4.363 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.016 3.984 11 C 0.030 3.970 12 H 0.094 0.906 13 C -0.157 4.157 14 C -0.173 4.173 15 C -0.025 4.025 16 N -0.351 5.351 17 C 0.311 3.689 18 O -0.378 6.378 19 C -0.028 4.028 20 O -0.277 6.277 21 C 0.002 3.998 22 C -0.146 4.146 23 C -0.136 4.136 24 C -0.058 4.058 25 C -0.125 4.125 26 C -0.138 4.138 27 C -0.139 4.139 28 C -0.139 4.139 29 C -0.135 4.135 30 H 0.063 0.937 31 H 0.216 0.784 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.142 0.858 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.249 -31.934 1.165 32.561 hybrid contribution 0.137 0.704 -0.236 0.755 sum 6.387 -31.230 0.928 31.890 Atomic orbital electron populations 1.69669 1.05042 1.25402 1.58318 1.24720 0.95558 0.97603 1.03318 0.86100 0.78805 0.84123 0.77103 1.20599 1.21947 1.21901 1.19269 0.91064 0.84019 1.41927 0.91212 1.42210 1.05729 0.99743 1.89631 1.20992 0.93374 0.85043 0.98979 1.21834 0.94307 0.82902 0.97957 0.90607 1.22664 1.01998 0.95222 0.95862 1.22805 0.96618 0.96784 1.01057 1.22361 0.98455 0.95953 0.85771 1.48463 1.51721 1.20079 1.14842 1.19761 0.78860 0.88164 0.82134 1.90788 1.57032 1.56329 1.33636 1.22160 0.96746 0.95385 0.88507 1.88046 1.70235 1.33064 1.36313 1.22040 0.96224 0.85435 0.96112 1.23062 0.98052 0.98266 0.95255 1.21670 1.00199 0.92638 0.99135 1.19140 0.97816 0.95467 0.93422 1.21306 0.96835 0.94557 0.99827 1.21128 0.99707 0.97477 0.95489 1.21234 0.99014 0.99690 0.93929 1.21114 0.97751 0.95058 0.99988 1.21511 1.00056 0.97464 0.94491 0.93665 0.78369 0.94663 0.96198 0.89796 0.89714 0.89942 0.90776 0.91168 0.91060 0.90487 0.90544 0.92144 0.91301 0.85343 0.85314 0.85737 0.85913 0.86058 0.85847 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 23.26 29.55 -169.99 -5.02 18.23 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 7 C -0.23 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.73 -19.45 5.39 -59.91 -0.32 -19.77 16 10 C 0.14 3.25 5.64 -4.04 -0.02 3.23 16 11 C 0.13 2.36 2.97 -66.96 -0.20 2.16 16 12 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 13 C -0.12 -1.74 6.15 -24.90 -0.15 -1.89 16 14 C -0.13 -1.36 7.08 -24.58 -0.17 -1.53 16 15 C 0.10 0.99 6.74 -2.52 -0.02 0.97 16 16 N -0.61 -9.14 3.07 -163.02 -0.50 -9.64 16 17 C 0.52 8.63 7.75 -10.99 -0.09 8.55 16 18 O -0.50 -11.02 15.30 -14.35 -0.22 -11.24 16 19 C 0.05 0.61 5.35 36.01 0.19 0.80 16 20 O -0.36 -4.91 9.86 -55.14 -0.54 -5.46 16 21 C 0.08 0.74 4.52 36.01 0.16 0.90 16 22 C -0.13 -1.19 9.85 -36.22 -0.36 -1.54 16 23 C -0.12 -0.96 9.81 -37.58 -0.37 -1.33 16 24 C -0.06 -0.48 5.19 -105.02 -0.55 -1.03 16 25 C -0.11 -0.81 9.79 -39.19 -0.38 -1.20 16 26 C -0.12 -0.81 10.03 -39.64 -0.40 -1.21 16 27 C -0.12 -0.78 10.04 -39.50 -0.40 -1.18 16 28 C -0.12 -0.80 10.03 -39.64 -0.40 -1.20 16 29 C -0.12 -0.87 7.40 -39.19 -0.29 -1.16 16 30 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.38 10.49 7.57 -40.82 -0.31 10.19 16 32 H 0.04 0.90 6.59 -51.93 -0.34 0.56 16 33 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 34 H 0.08 1.32 7.80 -51.93 -0.40 0.92 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.52 7.47 -51.93 -0.39 0.13 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.69 7.95 -51.93 -0.41 0.28 16 42 H 0.06 0.45 7.53 -51.93 -0.39 0.06 16 43 H 0.07 0.62 5.25 -51.93 -0.27 0.34 16 44 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 46 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 47 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 48 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 49 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 50 H 0.13 0.79 5.78 -52.48 -0.30 0.49 16 LS Contribution 408.70 15.07 6.16 6.16 Total: -1.00 -37.00 408.70 -11.27 -48.26 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.86 Total: 5.91 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.68 Total: -4.22 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.10 Total: -57.64 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.76 Total: -16.70 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.00 -11.27 -48.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569544334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.073 kcal (2) G-P(sol) polarization free energy of solvation -36.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds