Wall clock time and date at job start Wed Apr 1 2020 02:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48500 * 109.46961 * 269.99808 * 3 2 1 5 5 H 1.48499 * 109.47208 * 30.00180 * 3 2 1 6 6 H 1.48504 * 109.47152 * 149.99890 * 3 2 1 7 7 C 1.38811 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99693 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99995 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47050 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46985 * 180.02562 * 11 10 9 13 13 C 1.46503 * 119.99625 * 270.00009 * 12 11 10 14 14 C 1.53005 * 109.47345 * 278.15867 * 13 12 11 15 15 O 1.42893 * 109.46650 * 65.00161 * 14 13 12 16 16 C 1.34772 * 120.00189 * 90.00277 * 12 11 10 17 17 O 1.21572 * 120.00413 * 6.27215 * 16 12 11 18 18 C 1.47694 * 120.00007 * 186.27681 * 16 12 11 19 19 C 1.39743 * 120.00318 * 150.47477 * 18 16 12 20 20 C 1.37598 * 119.99694 * 180.02562 * 19 18 16 21 21 C 1.39714 * 120.00073 * 0.02562 * 20 19 18 22 22 C 1.47668 * 119.99500 * 179.97438 * 21 20 19 23 23 C 1.32293 * 124.59067 * 64.99790 * 22 21 20 24 24 C 1.51107 * 110.81429 * 179.97438 * 23 22 21 25 25 C 1.54587 * 104.82021 * 16.57661 * 24 23 22 26 26 C 1.51104 * 124.59762 * 244.99952 * 22 21 20 27 27 C 1.39710 * 120.01158 * 0.26755 * 21 20 19 28 28 C 1.37608 * 119.99869 * 359.45467 * 27 21 20 29 29 H 0.97005 * 120.00029 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00016 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47069 * 60.00315 * 10 9 7 32 32 H 1.08998 * 109.47367 * 300.00238 * 10 9 7 33 33 H 1.08998 * 109.47117 * 60.00733 * 11 10 9 34 34 H 1.08998 * 109.47288 * 300.00357 * 11 10 9 35 35 H 1.09000 * 109.47430 * 38.15896 * 13 12 11 36 36 H 1.09004 * 109.47033 * 158.16031 * 13 12 11 37 37 H 1.08999 * 109.47265 * 185.00122 * 14 13 12 38 38 H 1.08995 * 109.46817 * 304.99933 * 14 13 12 39 39 H 0.96703 * 113.99611 * 180.02562 * 15 14 13 40 40 H 1.07999 * 120.00334 * 0.02562 * 19 18 16 41 41 H 1.07999 * 120.00279 * 179.97438 * 20 19 18 42 42 H 1.07998 * 124.59413 * 359.97438 * 23 22 21 43 43 H 1.09007 * 110.37287 * 257.74360 * 24 23 22 44 44 H 1.08999 * 110.37001 * 135.40702 * 24 23 22 45 45 H 1.08996 * 110.99591 * 93.12315 * 25 24 23 46 46 H 1.09000 * 110.99006 * 216.90655 * 25 24 23 47 47 H 1.08997 * 110.36888 * 44.59290 * 26 22 21 48 48 H 1.09004 * 110.46166 * 282.31195 * 26 22 21 49 49 H 1.07998 * 120.00113 * 179.72463 * 27 21 20 50 50 H 1.07999 * 120.00231 * 180.27469 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.6163 -2.1913 0.0020 12 7 6.3488 -3.4600 0.0025 13 6 6.7151 -4.0937 1.2715 14 6 7.9906 -3.4468 1.8152 15 8 7.7310 -2.0790 2.1368 16 6 6.6857 -4.0441 -1.1644 17 8 6.4841 -3.4655 -2.2144 18 6 7.2997 -5.3874 -1.1677 19 6 7.0998 -6.2445 -2.2531 20 6 7.6715 -7.4961 -2.2558 21 6 8.4514 -7.9102 -1.1730 22 6 9.0644 -9.2536 -1.1757 23 6 9.9939 -9.6533 -2.0280 24 6 10.3995 -11.0819 -1.7492 25 6 9.2718 -11.6457 -0.8546 26 6 8.7150 -10.3581 -0.2055 27 6 8.6463 -7.0557 -0.0850 28 6 8.0794 -5.8018 -0.0846 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 3.8491 -3.0430 -0.8875 32 1 3.8484 -3.0419 0.8924 33 1 5.8796 -1.6190 0.8915 34 1 5.8796 -1.6204 -0.8885 35 1 5.9062 -3.9622 1.9902 36 1 6.8879 -5.1578 1.1097 37 1 8.3127 -3.9761 2.7120 38 1 8.7752 -3.5001 1.0605 39 1 8.4976 -1.6052 2.4877 40 1 6.4967 -5.9246 -3.0899 41 1 7.5167 -8.1587 -3.0944 42 1 10.4069 -9.0414 -2.8163 43 1 11.3525 -11.1096 -1.2208 44 1 10.4638 -11.6465 -2.6793 45 1 8.5087 -12.1417 -1.4542 46 1 9.6733 -12.3221 -0.1000 47 1 7.6340 -10.4299 -0.0858 48 1 9.1920 -10.1831 0.7589 49 1 9.2455 -7.3777 0.7539 50 1 8.2338 -5.1396 0.7545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569958437.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:45 Heat of formation + Delta-G solvation = 3.838234 kcal Electronic energy + Delta-G solvation = -29516.094200 eV Core-core repulsion = 25510.151248 eV Total energy + Delta-G solvation = -4005.942952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.82850 -39.40246 -37.89650 -37.42743 -35.67959 -34.58369 -32.56780 -31.66331 -31.19843 -29.75221 -28.99407 -28.54976 -27.46174 -24.26478 -23.44082 -22.94233 -22.62023 -21.35178 -21.12848 -19.64197 -19.03882 -17.92147 -17.52240 -17.41741 -16.74207 -16.39970 -15.93157 -15.68878 -15.19711 -14.86564 -14.56673 -14.38874 -14.07518 -13.84554 -13.72076 -13.68262 -13.43120 -13.22282 -13.10734 -12.92468 -12.56407 -12.40495 -12.24502 -12.11992 -11.85888 -11.64055 -11.58939 -11.47470 -11.45242 -11.13589 -11.00011 -10.97871 -10.64105 -10.25037 -10.09836 -9.80731 -9.53284 -9.43753 -9.24257 -8.82072 -8.74803 -8.51901 -7.16444 -5.69851 -3.05263 0.52862 1.06711 1.69860 2.72923 2.97022 3.44787 3.48478 3.51496 3.53573 3.90434 4.04826 4.24885 4.31854 4.52199 4.57450 4.58156 4.64893 4.66558 4.80275 4.88829 4.93845 5.00720 5.03085 5.14284 5.19232 5.24378 5.28787 5.38145 5.43470 5.44095 5.52191 5.55940 5.60430 5.68972 5.71166 5.74201 5.77768 5.87439 5.90126 6.03756 6.09009 6.17263 6.22205 6.39933 6.48810 6.57828 6.73501 6.90248 7.36162 7.49766 8.05703 8.21545 8.48719 9.27774 10.00186 10.20291 11.48541 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.002129 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.579850 B =13149.446292 C =13779.958344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.147 3.853 11 C 0.105 3.895 12 N -0.591 5.591 13 C 0.073 3.927 14 C 0.052 3.948 15 O -0.559 6.559 16 C 0.552 3.448 17 O -0.527 6.527 18 C -0.123 4.123 19 C -0.059 4.059 20 C -0.112 4.112 21 C -0.020 4.020 22 C -0.104 4.104 23 C -0.149 4.149 24 C -0.100 4.100 25 C -0.125 4.125 26 C -0.088 4.088 27 C -0.115 4.115 28 C -0.120 4.120 29 H 0.259 0.741 30 H 0.361 0.639 31 H 0.028 0.972 32 H 0.025 0.975 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.378 0.622 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.128 0.872 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.215 -22.961 2.781 35.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.019 3.981 11 C -0.017 4.017 12 N -0.322 5.322 13 C -0.050 4.050 14 C -0.027 4.027 15 O -0.364 6.364 16 C 0.340 3.660 17 O -0.404 6.404 18 C -0.126 4.126 19 C -0.078 4.078 20 C -0.130 4.130 21 C -0.020 4.020 22 C -0.104 4.104 23 C -0.167 4.167 24 C -0.137 4.137 25 C -0.162 4.162 26 C -0.125 4.125 27 C -0.133 4.133 28 C -0.138 4.138 29 H 0.069 0.931 30 H 0.194 0.806 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.139 0.861 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.225 0.775 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.146 0.854 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 26.250 -22.880 2.017 34.880 hybrid contribution 1.080 1.374 0.259 1.767 sum 27.330 -21.505 2.275 34.851 Atomic orbital electron populations 1.69708 1.05077 1.25764 1.57801 1.24666 0.95277 0.97234 1.02093 0.86517 0.79219 0.84818 0.77858 1.21014 1.21743 1.20220 1.19040 0.80444 0.94771 1.42796 0.89283 1.42542 1.04046 1.02004 1.91230 1.20885 0.88941 0.89643 0.98666 1.21818 0.91951 0.83912 1.04025 1.47610 1.55807 1.23952 1.04863 1.22566 0.97415 0.98556 0.86495 1.22744 0.97415 0.83967 0.98539 1.86599 1.40198 1.22818 1.86789 1.18352 0.78511 0.85313 0.83839 1.90814 1.54290 1.64384 1.30941 1.20053 1.01312 0.95028 0.96252 1.21198 0.97207 0.92473 0.96926 1.21215 0.97530 0.96082 0.98182 1.18772 0.96398 0.92531 0.94296 1.20669 0.98375 0.93092 0.98301 1.23679 0.97492 0.96949 0.98568 1.21334 0.98927 0.93389 1.00019 1.22437 0.98002 0.96856 0.98952 1.21246 1.01604 0.91958 0.97677 1.21141 1.00284 0.93724 0.98163 1.22190 0.96548 0.97149 0.97925 0.93112 0.80614 0.95451 0.95689 0.88869 0.90002 0.89069 0.86119 0.92329 0.93163 0.77515 0.84539 0.85253 0.85575 0.90503 0.90911 0.90952 0.90772 0.90845 0.90512 0.85391 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.42 13.97 55.49 0.78 -29.65 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 23.11 27.74 -169.99 -4.71 18.39 16 4 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 7 C -0.24 -7.24 10.47 -15.06 -0.16 -7.39 16 8 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 9 N -0.75 -19.41 5.41 -59.91 -0.32 -19.73 16 10 C 0.15 3.19 6.58 -4.04 -0.03 3.16 16 11 C 0.11 1.89 5.40 -4.04 -0.02 1.87 16 12 N -0.59 -8.77 2.48 -174.85 -0.43 -9.20 16 13 C 0.07 0.77 5.34 -4.04 -0.02 0.75 16 14 C 0.05 0.43 6.15 37.16 0.23 0.66 16 15 O -0.56 -5.76 11.78 -35.23 -0.41 -6.17 16 16 C 0.55 8.80 7.46 -12.40 -0.09 8.71 16 17 O -0.53 -10.55 16.24 5.30 0.09 -10.46 16 18 C -0.12 -1.53 5.60 -104.91 -0.59 -2.12 16 19 C -0.06 -0.69 9.57 -39.25 -0.38 -1.07 16 20 C -0.11 -1.07 9.76 -39.26 -0.38 -1.45 16 21 C -0.02 -0.17 5.65 -104.95 -0.59 -0.76 16 22 C -0.10 -0.77 5.50 -102.50 -0.56 -1.33 16 23 C -0.15 -0.99 10.68 -36.04 -0.38 -1.37 16 24 C -0.10 -0.50 6.80 -26.85 -0.18 -0.69 16 25 C -0.12 -0.61 7.17 -25.07 -0.18 -0.79 16 26 C -0.09 -0.53 6.74 -26.86 -0.18 -0.71 16 27 C -0.12 -0.93 9.76 -39.26 -0.38 -1.31 16 28 C -0.12 -1.11 7.46 -39.25 -0.29 -1.40 16 29 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 30 H 0.36 9.04 5.53 -40.82 -0.23 8.81 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.62 6.40 -51.93 -0.33 1.29 16 34 H 0.08 1.61 7.34 -51.93 -0.38 1.22 16 35 H 0.09 1.03 8.13 -51.93 -0.42 0.61 16 36 H 0.12 1.05 4.04 -52.11 -0.21 0.84 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.40 7.25 -51.93 -0.38 0.02 16 39 H 0.38 2.19 9.12 45.56 0.42 2.60 16 40 H 0.14 1.66 7.91 -52.49 -0.41 1.24 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 50 H 0.15 1.14 2.57 -52.49 -0.13 1.01 16 LS Contribution 402.02 15.07 6.06 6.06 Total: -1.00 -37.72 402.02 -10.01 -47.73 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.75 Total: 8.29 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -4.29 Total: -5.26 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.02 Total: -58.57 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.33 Total: -16.64 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.71 Total: 18.39 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.72 -10.01 -47.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569958437.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.566 kcal (2) G-P(sol) polarization free energy of solvation -37.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds