Wall clock time and date at job start Wed Apr 1 2020 02:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48500 * 109.46961 * 269.99808 * 3 2 1 5 5 H 1.48499 * 109.47208 * 30.00180 * 3 2 1 6 6 H 1.48504 * 109.47152 * 149.99890 * 3 2 1 7 7 C 1.38811 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99693 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99995 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47050 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46985 * 180.02562 * 11 10 9 13 13 C 1.46503 * 119.99625 * 270.00009 * 12 11 10 14 14 C 1.53005 * 109.47345 * 278.15867 * 13 12 11 15 15 O 1.42893 * 109.46650 * 65.00161 * 14 13 12 16 16 C 1.34772 * 120.00189 * 90.00277 * 12 11 10 17 17 O 1.21572 * 120.00413 * 6.27215 * 16 12 11 18 18 C 1.47694 * 120.00007 * 186.27681 * 16 12 11 19 19 C 1.39743 * 120.00318 * 150.47477 * 18 16 12 20 20 C 1.37598 * 119.99694 * 180.02562 * 19 18 16 21 21 C 1.39714 * 120.00073 * 0.02562 * 20 19 18 22 22 C 1.47668 * 119.99500 * 179.97438 * 21 20 19 23 23 C 1.32293 * 124.59067 * 64.99790 * 22 21 20 24 24 C 1.51107 * 110.81429 * 179.97438 * 23 22 21 25 25 C 1.54587 * 104.82021 * 16.57661 * 24 23 22 26 26 C 1.51104 * 124.59762 * 244.99952 * 22 21 20 27 27 C 1.39710 * 120.01158 * 0.26755 * 21 20 19 28 28 C 1.37608 * 119.99869 * 359.45467 * 27 21 20 29 29 H 0.97005 * 120.00029 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00016 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47069 * 60.00315 * 10 9 7 32 32 H 1.08998 * 109.47367 * 300.00238 * 10 9 7 33 33 H 1.08998 * 109.47117 * 60.00733 * 11 10 9 34 34 H 1.08998 * 109.47288 * 300.00357 * 11 10 9 35 35 H 1.09000 * 109.47430 * 38.15896 * 13 12 11 36 36 H 1.09004 * 109.47033 * 158.16031 * 13 12 11 37 37 H 1.08999 * 109.47265 * 185.00122 * 14 13 12 38 38 H 1.08995 * 109.46817 * 304.99933 * 14 13 12 39 39 H 0.96703 * 113.99611 * 180.02562 * 15 14 13 40 40 H 1.07999 * 120.00334 * 0.02562 * 19 18 16 41 41 H 1.07999 * 120.00279 * 179.97438 * 20 19 18 42 42 H 1.07998 * 124.59413 * 359.97438 * 23 22 21 43 43 H 1.09007 * 110.37287 * 257.74360 * 24 23 22 44 44 H 1.08999 * 110.37001 * 135.40702 * 24 23 22 45 45 H 1.08996 * 110.99591 * 93.12315 * 25 24 23 46 46 H 1.09000 * 110.99006 * 216.90655 * 25 24 23 47 47 H 1.08997 * 110.36888 * 44.59290 * 26 22 21 48 48 H 1.09004 * 110.46166 * 282.31195 * 26 22 21 49 49 H 1.07998 * 120.00113 * 179.72463 * 27 21 20 50 50 H 1.07999 * 120.00231 * 180.27469 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.6163 -2.1913 0.0020 12 7 6.3488 -3.4600 0.0025 13 6 6.7151 -4.0937 1.2715 14 6 7.9906 -3.4468 1.8152 15 8 7.7310 -2.0790 2.1368 16 6 6.6857 -4.0441 -1.1644 17 8 6.4841 -3.4655 -2.2144 18 6 7.2997 -5.3874 -1.1677 19 6 7.0998 -6.2445 -2.2531 20 6 7.6715 -7.4961 -2.2558 21 6 8.4514 -7.9102 -1.1730 22 6 9.0644 -9.2536 -1.1757 23 6 9.9939 -9.6533 -2.0280 24 6 10.3995 -11.0819 -1.7492 25 6 9.2718 -11.6457 -0.8546 26 6 8.7150 -10.3581 -0.2055 27 6 8.6463 -7.0557 -0.0850 28 6 8.0794 -5.8018 -0.0846 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 3.8491 -3.0430 -0.8875 32 1 3.8484 -3.0419 0.8924 33 1 5.8796 -1.6190 0.8915 34 1 5.8796 -1.6204 -0.8885 35 1 5.9062 -3.9622 1.9902 36 1 6.8879 -5.1578 1.1097 37 1 8.3127 -3.9761 2.7120 38 1 8.7752 -3.5001 1.0605 39 1 8.4976 -1.6052 2.4877 40 1 6.4967 -5.9246 -3.0899 41 1 7.5167 -8.1587 -3.0944 42 1 10.4069 -9.0414 -2.8163 43 1 11.3525 -11.1096 -1.2208 44 1 10.4638 -11.6465 -2.6793 45 1 8.5087 -12.1417 -1.4542 46 1 9.6733 -12.3221 -0.1000 47 1 7.6340 -10.4299 -0.0858 48 1 9.1920 -10.1831 0.7589 49 1 9.2455 -7.3777 0.7539 50 1 8.2338 -5.1396 0.7545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569958437.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:43 Heat of formation + Delta-G solvation = -22.032450 kcal Electronic energy + Delta-G solvation = -29517.216037 eV Core-core repulsion = 25510.151248 eV Total energy + Delta-G solvation = -4007.064789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.83708 -40.11701 -38.60550 -38.35878 -37.20945 -36.07255 -33.99748 -32.99136 -32.32349 -30.84671 -29.75125 -29.29513 -28.53236 -25.77916 -24.45623 -23.81668 -23.72400 -23.03421 -21.58295 -20.80011 -19.70122 -19.63248 -18.68172 -18.30344 -17.64584 -17.30729 -16.81265 -16.54388 -16.32174 -16.06849 -15.85404 -15.53993 -15.36609 -15.22847 -15.05659 -14.74550 -14.52007 -14.38560 -13.99466 -13.84182 -13.53845 -13.42429 -13.14582 -13.09369 -12.99095 -12.76166 -12.62230 -12.57793 -12.24878 -12.17070 -12.11566 -12.03088 -11.93119 -11.86071 -11.84483 -11.06059 -11.02936 -10.88123 -10.11853 -9.98783 -9.79130 -9.40503 -9.35173 -8.07974 -5.43963 -0.29891 0.32126 1.14615 1.35364 1.40237 1.47153 1.62851 1.85220 2.44940 2.68277 3.22192 3.25887 3.33032 3.55903 3.68922 3.79041 3.83566 3.92458 4.00774 4.07996 4.10783 4.19693 4.23434 4.26270 4.32703 4.40125 4.41800 4.49649 4.52642 4.61230 4.70981 4.82973 4.85238 4.90274 4.94798 4.98413 4.99619 5.02474 5.04439 5.16312 5.24908 5.28885 5.37713 5.42403 5.42686 5.61870 5.67242 5.83335 5.87982 6.14733 6.28498 6.95634 6.98132 7.01631 7.72772 7.94907 9.13176 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.002129 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.579850 B =13149.446292 C =13779.958344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.061 4.061 3 Si 0.959 3.041 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.248 1.248 7 C -0.244 4.244 8 H 0.053 0.947 9 N -0.753 5.753 10 C 0.151 3.849 11 C 0.123 3.877 12 N -0.589 5.589 13 C 0.062 3.938 14 C 0.054 3.946 15 O -0.588 6.588 16 C 0.546 3.454 17 O -0.583 6.583 18 C -0.147 4.147 19 C -0.076 4.076 20 C -0.115 4.115 21 C -0.014 4.014 22 C -0.120 4.120 23 C -0.146 4.146 24 C -0.100 4.100 25 C -0.124 4.124 26 C -0.087 4.087 27 C -0.107 4.107 28 C -0.109 4.109 29 H 0.261 0.739 30 H 0.368 0.632 31 H 0.002 0.998 32 H 0.031 0.969 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.397 0.603 40 H 0.117 0.883 41 H 0.141 0.859 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.162 0.838 50 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.887 -24.157 4.874 39.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.253 4.253 3 Si 0.785 3.215 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.173 1.173 7 C -0.374 4.374 8 H 0.071 0.929 9 N -0.399 5.399 10 C 0.023 3.977 11 C 0.000 4.000 12 N -0.319 5.319 13 C -0.059 4.059 14 C -0.024 4.024 15 O -0.397 6.397 16 C 0.337 3.663 17 O -0.464 6.464 18 C -0.150 4.150 19 C -0.095 4.095 20 C -0.133 4.133 21 C -0.014 4.014 22 C -0.120 4.120 23 C -0.164 4.164 24 C -0.137 4.137 25 C -0.161 4.161 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.126 4.126 29 H 0.069 0.931 30 H 0.201 0.799 31 H 0.020 0.980 32 H 0.049 0.951 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.160 0.840 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.247 0.753 40 H 0.135 0.865 41 H 0.158 0.842 42 H 0.144 0.856 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.180 0.820 50 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 29.982 -24.117 4.156 38.702 hybrid contribution -0.060 1.559 -0.415 1.615 sum 29.922 -22.558 3.741 37.658 Atomic orbital electron populations 1.69888 1.07094 1.26974 1.59048 1.25565 0.96282 1.01482 1.01965 0.85349 0.78838 0.79094 0.78185 1.20619 1.21320 1.17272 1.18983 0.82342 0.93641 1.42462 0.92938 1.42485 1.02684 1.03698 1.91072 1.20935 0.91358 0.87868 0.97501 1.21417 0.89427 0.85570 1.03634 1.47678 1.54883 1.22937 1.06421 1.22986 0.98801 0.99881 0.84254 1.22791 0.95703 0.83595 1.00347 1.86521 1.42062 1.23951 1.87173 1.18986 0.77837 0.86302 0.83218 1.90770 1.56848 1.65906 1.32866 1.19865 1.03504 0.93394 0.98200 1.21159 0.98094 0.93658 0.96630 1.21325 0.97500 0.95256 0.99202 1.19044 0.95167 0.93345 0.93848 1.20720 0.99035 0.92786 0.99502 1.23895 0.96929 0.97757 0.97822 1.21382 0.99414 0.92311 1.00554 1.22460 0.97853 0.96620 0.99188 1.21279 1.01419 0.91818 0.97931 1.21511 0.99535 0.92696 0.98746 1.22344 0.95241 0.97899 0.97152 0.93052 0.79856 0.97996 0.95095 0.87530 0.91908 0.89623 0.83969 0.88210 0.92524 0.75311 0.86471 0.84162 0.85642 0.89442 0.90273 0.91212 0.89387 0.91446 0.89349 0.82020 0.80826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.32 13.97 21.65 0.30 -65.02 16 2 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.96 47.77 27.74 68.60 1.90 49.67 16 4 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.25 -11.15 6.52 99.48 0.65 -10.50 16 7 C -0.24 -15.08 10.47 84.03 0.88 -14.20 16 8 H 0.05 3.55 8.06 -2.91 -0.02 3.53 16 9 N -0.75 -39.32 5.41 -343.46 -1.86 -41.18 16 10 C 0.15 6.75 6.58 86.38 0.57 7.32 16 11 C 0.12 4.46 5.40 86.38 0.47 4.93 16 12 N -0.59 -17.44 2.48 -825.38 -2.04 -19.48 16 13 C 0.06 1.19 5.34 86.38 0.46 1.65 16 14 C 0.05 0.71 6.15 71.98 0.44 1.15 16 15 O -0.59 -10.51 11.78 -148.98 -1.75 -12.27 16 16 C 0.55 18.02 7.46 86.74 0.65 18.67 16 17 O -0.58 -24.86 16.24 -3.94 -0.06 -24.92 16 18 C -0.15 -3.64 5.60 -20.05 -0.11 -3.76 16 19 C -0.08 -1.87 9.57 22.48 0.22 -1.65 16 20 C -0.11 -2.15 9.76 22.48 0.22 -1.93 16 21 C -0.01 -0.21 5.65 -20.07 -0.11 -0.32 16 22 C -0.12 -1.46 5.50 -18.31 -0.10 -1.56 16 23 C -0.15 -1.59 10.68 24.75 0.26 -1.33 16 24 C -0.10 -0.74 6.80 30.52 0.21 -0.53 16 25 C -0.12 -0.88 7.17 31.67 0.23 -0.65 16 26 C -0.09 -0.80 6.74 30.51 0.21 -0.60 16 27 C -0.11 -1.38 9.76 22.48 0.22 -1.16 16 28 C -0.11 -1.75 7.46 22.48 0.17 -1.58 16 29 H 0.26 16.38 8.31 -92.70 -0.77 15.61 16 30 H 0.37 18.12 5.53 -92.71 -0.51 17.61 16 31 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.11 3.60 6.40 -2.39 -0.02 3.59 16 34 H 0.06 2.53 7.34 -2.39 -0.02 2.51 16 35 H 0.09 1.78 8.13 -2.39 -0.02 1.76 16 36 H 0.14 2.09 4.04 -2.55 -0.01 2.08 16 37 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 0.70 7.25 -2.39 -0.02 0.68 16 39 H 0.40 3.43 9.12 -74.06 -0.68 2.75 16 40 H 0.12 3.20 7.91 -2.91 -0.02 3.18 16 41 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 50 H 0.18 1.98 2.57 -2.91 -0.01 1.97 16 Total: -1.00 -85.73 402.02 1.54 -84.19 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.28 Total: 27.90 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 5.33 Total: 1.11 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -3.60 Total: -125.68 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.82 Total: -37.19 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.90 Total: 49.67 kcal Total: -85.73 1.54 -84.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569958437.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.156 kcal (2) G-P(sol) polarization free energy of solvation -85.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds