Wall clock time and date at job start Wed Apr 1 2020 03:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00398 * 2 1 4 4 H 1.48497 * 109.46833 * 354.94688 * 3 2 1 5 5 H 1.48497 * 109.47523 * 114.94834 * 3 2 1 6 6 H 1.48508 * 109.47271 * 234.94951 * 3 2 1 7 7 C 1.38818 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99856 * 354.50444 * 7 2 1 9 9 N 1.36935 * 120.00126 * 174.51404 * 7 2 1 10 10 C 1.47274 * 135.93763 * 7.18442 * 9 7 2 11 11 C 1.52661 * 87.59771 * 153.87676 * 10 9 7 12 12 C 1.47275 * 135.93442 * 187.55930 * 9 7 2 13 13 C 1.53881 * 115.55936 * 141.37122 * 11 10 9 14 14 C 1.55510 * 100.75539 * 166.95451 * 13 11 10 15 15 C 1.54473 * 102.38818 * 327.03171 * 14 13 11 16 16 H 1.08998 * 109.90659 * 261.81265 * 15 14 13 17 17 C 1.53003 * 109.82812 * 140.87746 * 15 14 13 18 18 N 1.46504 * 109.46734 * 180.42482 * 17 15 14 19 19 C 1.34776 * 119.99868 * 180.02562 * 18 17 15 20 20 O 1.21283 * 120.00141 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00218 * 179.97438 * 19 18 17 22 22 C 1.52992 * 109.47447 * 179.97438 * 21 19 18 23 23 C 1.50704 * 109.47271 * 180.02562 * 22 21 19 24 24 C 1.38234 * 119.99654 * 269.72897 * 23 22 21 25 25 C 1.38235 * 119.99591 * 179.81292 * 24 23 22 26 26 C 1.38227 * 120.00451 * 0.41226 * 25 24 23 27 27 C 1.38244 * 119.99798 * 359.81765 * 26 25 24 28 28 C 1.38231 * 120.00025 * 89.99765 * 23 22 21 29 29 O 1.42402 * 117.01772 * 268.30443 * 11 10 9 30 30 H 0.96998 * 120.00657 * 174.90682 * 1 2 3 31 31 H 1.08999 * 113.51507 * 268.53460 * 10 9 7 32 32 H 1.08997 * 113.50859 * 39.11318 * 10 9 7 33 33 H 1.08996 * 113.51366 * 320.88527 * 12 9 7 34 34 H 1.09004 * 113.50896 * 91.39789 * 12 9 7 35 35 H 1.09002 * 111.16237 * 284.83046 * 13 11 10 36 36 H 1.09003 * 111.15876 * 49.08509 * 13 11 10 37 37 H 1.09001 * 110.81881 * 208.80472 * 14 13 11 38 38 H 1.09003 * 110.99321 * 85.33561 * 14 13 11 39 39 H 1.08999 * 109.47114 * 300.42087 * 17 15 14 40 40 H 1.08997 * 109.47401 * 60.42136 * 17 15 14 41 41 H 0.97001 * 120.00112 * 359.97438 * 18 17 15 42 42 H 1.09007 * 109.47001 * 300.00121 * 21 19 18 43 43 H 1.09007 * 109.47083 * 59.99655 * 21 19 18 44 44 H 1.09007 * 109.47241 * 300.00124 * 22 21 19 45 45 H 1.08997 * 109.47174 * 59.99959 * 22 21 19 46 46 H 1.08000 * 120.00310 * 359.97438 * 24 23 22 47 47 H 1.08011 * 119.99746 * 180.20544 * 25 24 23 48 48 H 1.08000 * 120.00379 * 179.78914 * 26 25 24 49 49 H 1.08001 * 120.00049 * 179.97438 * 27 26 25 50 50 H 1.07996 * 120.00395 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2900 2.7436 -0.1233 5 1 3.0092 1.7511 1.2694 6 1 3.1941 1.6443 -1.1462 7 6 2.0102 -1.2022 -0.0005 8 1 1.4739 -2.1354 0.0886 9 7 3.3748 -1.2049 -0.1139 10 6 4.4381 -0.1859 -0.1221 11 6 5.3881 -1.2655 0.3903 12 6 4.4203 -2.2276 -0.2876 13 6 6.8112 -1.2294 -0.1939 14 6 7.5476 -2.1969 0.7756 15 6 6.8119 -1.9509 2.1114 16 1 7.3832 -1.2563 2.7272 17 6 6.6303 -3.2754 2.8555 18 7 5.9232 -3.0345 4.1158 19 6 5.6506 -4.0632 4.9428 20 8 5.9901 -5.1884 4.6435 21 6 4.9238 -3.8153 6.2395 22 6 4.7420 -5.1398 6.9835 23 6 4.0146 -4.8920 8.2799 24 6 4.7284 -4.6156 9.4310 25 6 4.0610 -4.3845 10.6193 26 6 2.6804 -4.4382 10.6584 27 6 1.9667 -4.7192 9.5083 28 6 2.6339 -4.9465 8.3191 29 8 5.5289 -1.3860 1.8022 30 1 -0.4851 -0.8367 -0.0746 31 1 4.6873 0.1745 -1.1202 32 1 4.2712 0.6224 0.5897 33 1 4.2384 -3.1370 0.2851 34 1 4.6637 -2.4277 -1.3311 35 1 6.8269 -1.6087 -1.2156 36 1 7.2322 -0.2252 -0.1426 37 1 8.6019 -1.9332 0.8595 38 1 7.4332 -3.2325 0.4553 39 1 6.0501 -3.9619 2.2389 40 1 7.6070 -3.7118 3.0645 41 1 5.6519 -2.1345 4.3554 42 1 5.5041 -3.1286 6.8558 43 1 3.9468 -3.3791 6.0308 44 1 4.1614 -5.8262 6.3670 45 1 5.7186 -5.5763 7.1921 46 1 5.8073 -4.5777 9.4013 47 1 4.6186 -4.1653 11.5180 48 1 2.1591 -4.2610 11.5876 49 1 0.8880 -4.7615 9.5389 50 1 2.0764 -5.1663 7.4207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570235725.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:28 Heat of formation + Delta-G solvation = -0.380248 kcal Electronic energy + Delta-G solvation = -29534.947586 eV Core-core repulsion = 25528.821706 eV Total energy + Delta-G solvation = -4006.125879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.42965 -39.82964 -39.16645 -36.93380 -34.57027 -34.13799 -32.37956 -32.10322 -31.09570 -30.38910 -29.22724 -27.09325 -25.54721 -24.98967 -23.48798 -22.78152 -21.58373 -21.29842 -21.00977 -20.14464 -19.31807 -17.42972 -17.37928 -16.80839 -16.72363 -16.00698 -15.88266 -15.81744 -15.26891 -15.05419 -14.60402 -14.26776 -14.02944 -13.79906 -13.64544 -13.35840 -13.29506 -13.22813 -13.15534 -12.88068 -12.82342 -12.46973 -12.12333 -12.07661 -11.76179 -11.63400 -11.47540 -11.39153 -11.19752 -11.01308 -10.83790 -10.62941 -10.43645 -10.36044 -9.88917 -9.56484 -9.13511 -9.12251 -9.05460 -8.90868 -8.90266 -8.85432 -7.14514 -6.26201 -3.19155 1.12682 1.18850 2.64248 3.12226 3.40961 3.45808 3.58243 3.65332 3.83132 4.43146 4.51062 4.62200 4.62389 4.62802 4.73643 4.78863 4.82448 4.89330 4.91756 4.96503 4.97424 5.07908 5.14340 5.30584 5.31552 5.34548 5.42756 5.47160 5.51785 5.56978 5.66708 5.69314 5.77156 5.86396 5.87348 5.93929 5.98691 6.05297 6.15815 6.21971 6.25264 6.29719 6.30688 6.39637 6.41023 6.44393 6.52220 6.79661 7.12777 7.43513 7.50180 8.21791 8.26658 9.00741 9.52857 10.38513 11.24060 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.002583 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.173638 B =10837.972598 C =12875.552330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.026 4.026 3 Si 1.070 2.930 4 H -0.295 1.295 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.298 4.298 8 H 0.082 0.918 9 N -0.621 5.621 10 C 0.102 3.898 11 C 0.071 3.929 12 C 0.110 3.890 13 C -0.139 4.139 14 C -0.144 4.144 15 C 0.064 3.936 16 H 0.084 0.916 17 C 0.113 3.887 18 N -0.721 5.721 19 C 0.513 3.487 20 O -0.549 6.549 21 C -0.136 4.136 22 C -0.064 4.064 23 C -0.081 4.081 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.127 4.127 27 C -0.118 4.118 28 C -0.115 4.115 29 O -0.332 6.332 30 H 0.260 0.740 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.406 0.594 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.403 -6.520 15.235 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.224 4.224 3 Si 0.903 3.097 4 H -0.223 1.223 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.424 4.424 8 H 0.099 0.901 9 N -0.349 5.349 10 C -0.024 4.024 11 C 0.030 3.970 12 C -0.017 4.017 13 C -0.177 4.177 14 C -0.182 4.182 15 C 0.005 3.995 16 H 0.102 0.898 17 C -0.011 4.011 18 N -0.372 5.372 19 C 0.300 3.700 20 O -0.427 6.427 21 C -0.175 4.175 22 C -0.102 4.102 23 C -0.081 4.081 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.145 4.145 27 C -0.136 4.136 28 C -0.133 4.133 29 O -0.251 6.251 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.241 0.759 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.001 -5.638 15.251 22.813 hybrid contribution 0.092 -1.309 -0.162 1.322 sum 16.093 -6.946 15.089 23.128 Atomic orbital electron populations 1.70906 1.05393 1.29123 1.52455 1.25703 0.96463 1.00926 0.99337 0.83726 0.73806 0.76040 0.76165 1.22257 1.21941 1.21520 1.20133 0.77929 0.95808 1.48564 0.90057 1.45896 1.01388 1.01838 1.85766 1.22855 0.87160 0.94087 0.98274 1.23154 0.92848 0.99661 0.81318 1.22699 0.87781 0.94211 0.97033 1.23004 0.94866 1.00035 0.99836 1.23065 0.99961 1.01140 0.94017 1.23090 0.86054 0.93820 0.96512 0.89792 1.21778 0.97163 0.97190 0.84972 1.45893 1.59392 1.11167 1.20766 1.20662 0.79079 0.84659 0.85610 1.90687 1.53356 1.22643 1.75990 1.21651 1.02200 0.99716 0.93979 1.20329 1.01109 0.96342 0.92432 1.19939 0.93838 0.99142 0.95198 1.21073 0.99830 1.00238 0.92434 1.21139 0.94583 1.00246 0.97884 1.21157 0.94357 1.00583 0.98367 1.21191 1.00015 0.99509 0.92864 1.21156 0.93907 0.99971 0.98259 1.88360 1.33302 1.82112 1.21288 0.92997 0.92415 0.92108 0.93385 0.93632 0.89527 0.90140 0.89996 0.90094 0.90970 0.90795 0.75883 0.88821 0.88402 0.90077 0.90240 0.86104 0.86194 0.86249 0.86017 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.11 13.70 55.49 0.76 -29.35 16 2 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 3 Si 1.07 27.19 25.17 -169.99 -4.28 22.91 16 4 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 5 H -0.29 -7.08 6.49 56.52 0.37 -6.71 16 6 H -0.29 -6.72 6.18 56.52 0.35 -6.37 16 7 C -0.30 -8.85 11.08 -15.06 -0.17 -9.02 16 8 H 0.08 2.56 8.06 -52.48 -0.42 2.13 16 9 N -0.62 -15.71 3.70 -184.80 -0.68 -16.39 16 10 C 0.10 2.16 5.25 -7.73 -0.04 2.12 16 11 C 0.07 1.23 1.56 -90.66 -0.14 1.09 16 12 C 0.11 2.20 8.24 -7.88 -0.06 2.14 16 13 C -0.14 -1.69 6.49 -24.94 -0.16 -1.85 16 14 C -0.14 -1.45 6.56 -24.62 -0.16 -1.61 16 15 C 0.06 0.76 3.62 -25.96 -0.09 0.67 16 16 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 17 C 0.11 1.40 5.23 -4.04 -0.02 1.38 16 18 N -0.72 -8.96 5.47 -60.29 -0.33 -9.29 16 19 C 0.51 6.77 7.83 -10.99 -0.09 6.68 16 20 O -0.55 -9.05 15.98 5.55 0.09 -8.96 16 21 C -0.14 -1.38 5.68 -27.89 -0.16 -1.54 16 22 C -0.06 -0.66 4.63 -27.88 -0.13 -0.79 16 23 C -0.08 -0.81 5.13 -104.62 -0.54 -1.34 16 24 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16 25 C -0.12 -1.02 10.05 -39.59 -0.40 -1.41 16 26 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 27 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 28 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 29 O -0.33 -5.68 10.69 -35.23 -0.38 -6.06 16 30 H 0.26 8.27 8.73 -40.82 -0.36 7.92 16 31 H 0.06 1.15 7.59 -51.93 -0.39 0.76 16 32 H 0.06 1.37 4.80 -51.93 -0.25 1.12 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.84 7.99 -51.93 -0.41 0.43 16 35 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.41 4.59 8.40 -40.82 -0.34 4.24 16 42 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.08 0.92 8.04 -51.92 -0.42 0.50 16 45 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 47 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 48 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 49 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 50 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 403.69 15.07 6.08 6.08 Total: -1.00 -36.44 403.69 -10.77 -47.21 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -8.21 Total: 4.16 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -3.82 Total: -10.32 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.25 Total: -55.03 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.29 Total: -15.02 kcal Atomic # 14 Polarization: 27.19 SS G_CDS: -4.28 Total: 22.91 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.44 -10.77 -47.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570235725.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.834 kcal (2) G-P(sol) polarization free energy of solvation -36.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds