Wall clock time and date at job start Wed Apr 1 2020 03:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00398 * 2 1 4 4 H 1.48497 * 109.46833 * 354.94688 * 3 2 1 5 5 H 1.48497 * 109.47523 * 114.94834 * 3 2 1 6 6 H 1.48508 * 109.47271 * 234.94951 * 3 2 1 7 7 C 1.38818 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99856 * 354.50444 * 7 2 1 9 9 N 1.36935 * 120.00126 * 174.51404 * 7 2 1 10 10 C 1.47274 * 135.93763 * 7.18442 * 9 7 2 11 11 C 1.52661 * 87.59771 * 153.87676 * 10 9 7 12 12 C 1.47275 * 135.93442 * 187.55930 * 9 7 2 13 13 C 1.53881 * 115.55936 * 141.37122 * 11 10 9 14 14 C 1.55510 * 100.75539 * 166.95451 * 13 11 10 15 15 C 1.54473 * 102.38818 * 327.03171 * 14 13 11 16 16 H 1.08998 * 109.90659 * 261.81265 * 15 14 13 17 17 C 1.53003 * 109.82812 * 140.87746 * 15 14 13 18 18 N 1.46504 * 109.46734 * 180.42482 * 17 15 14 19 19 C 1.34776 * 119.99868 * 180.02562 * 18 17 15 20 20 O 1.21283 * 120.00141 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00218 * 179.97438 * 19 18 17 22 22 C 1.52992 * 109.47447 * 179.97438 * 21 19 18 23 23 C 1.50704 * 109.47271 * 180.02562 * 22 21 19 24 24 C 1.38234 * 119.99654 * 269.72897 * 23 22 21 25 25 C 1.38235 * 119.99591 * 179.81292 * 24 23 22 26 26 C 1.38227 * 120.00451 * 0.41226 * 25 24 23 27 27 C 1.38244 * 119.99798 * 359.81765 * 26 25 24 28 28 C 1.38231 * 120.00025 * 89.99765 * 23 22 21 29 29 O 1.42402 * 117.01772 * 268.30443 * 11 10 9 30 30 H 0.96998 * 120.00657 * 174.90682 * 1 2 3 31 31 H 1.08999 * 113.51507 * 268.53460 * 10 9 7 32 32 H 1.08997 * 113.50859 * 39.11318 * 10 9 7 33 33 H 1.08996 * 113.51366 * 320.88527 * 12 9 7 34 34 H 1.09004 * 113.50896 * 91.39789 * 12 9 7 35 35 H 1.09002 * 111.16237 * 284.83046 * 13 11 10 36 36 H 1.09003 * 111.15876 * 49.08509 * 13 11 10 37 37 H 1.09001 * 110.81881 * 208.80472 * 14 13 11 38 38 H 1.09003 * 110.99321 * 85.33561 * 14 13 11 39 39 H 1.08999 * 109.47114 * 300.42087 * 17 15 14 40 40 H 1.08997 * 109.47401 * 60.42136 * 17 15 14 41 41 H 0.97001 * 120.00112 * 359.97438 * 18 17 15 42 42 H 1.09007 * 109.47001 * 300.00121 * 21 19 18 43 43 H 1.09007 * 109.47083 * 59.99655 * 21 19 18 44 44 H 1.09007 * 109.47241 * 300.00124 * 22 21 19 45 45 H 1.08997 * 109.47174 * 59.99959 * 22 21 19 46 46 H 1.08000 * 120.00310 * 359.97438 * 24 23 22 47 47 H 1.08011 * 119.99746 * 180.20544 * 25 24 23 48 48 H 1.08000 * 120.00379 * 179.78914 * 26 25 24 49 49 H 1.08001 * 120.00049 * 179.97438 * 27 26 25 50 50 H 1.07996 * 120.00395 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2900 2.7436 -0.1233 5 1 3.0092 1.7511 1.2694 6 1 3.1941 1.6443 -1.1462 7 6 2.0102 -1.2022 -0.0005 8 1 1.4739 -2.1354 0.0886 9 7 3.3748 -1.2049 -0.1139 10 6 4.4381 -0.1859 -0.1221 11 6 5.3881 -1.2655 0.3903 12 6 4.4203 -2.2276 -0.2876 13 6 6.8112 -1.2294 -0.1939 14 6 7.5476 -2.1969 0.7756 15 6 6.8119 -1.9509 2.1114 16 1 7.3832 -1.2563 2.7272 17 6 6.6303 -3.2754 2.8555 18 7 5.9232 -3.0345 4.1158 19 6 5.6506 -4.0632 4.9428 20 8 5.9901 -5.1884 4.6435 21 6 4.9238 -3.8153 6.2395 22 6 4.7420 -5.1398 6.9835 23 6 4.0146 -4.8920 8.2799 24 6 4.7284 -4.6156 9.4310 25 6 4.0610 -4.3845 10.6193 26 6 2.6804 -4.4382 10.6584 27 6 1.9667 -4.7192 9.5083 28 6 2.6339 -4.9465 8.3191 29 8 5.5289 -1.3860 1.8022 30 1 -0.4851 -0.8367 -0.0746 31 1 4.6873 0.1745 -1.1202 32 1 4.2712 0.6224 0.5897 33 1 4.2384 -3.1370 0.2851 34 1 4.6637 -2.4277 -1.3311 35 1 6.8269 -1.6087 -1.2156 36 1 7.2322 -0.2252 -0.1426 37 1 8.6019 -1.9332 0.8595 38 1 7.4332 -3.2325 0.4553 39 1 6.0501 -3.9619 2.2389 40 1 7.6070 -3.7118 3.0645 41 1 5.6519 -2.1345 4.3554 42 1 5.5041 -3.1286 6.8558 43 1 3.9468 -3.3791 6.0308 44 1 4.1614 -5.8262 6.3670 45 1 5.7186 -5.5763 7.1921 46 1 5.8073 -4.5777 9.4013 47 1 4.6186 -4.1653 11.5180 48 1 2.1591 -4.2610 11.5876 49 1 0.8880 -4.7615 9.5389 50 1 2.0764 -5.1663 7.4207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570235725.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:27 Heat of formation + Delta-G solvation = -25.573582 kcal Electronic energy + Delta-G solvation = -29536.040051 eV Core-core repulsion = 25528.821706 eV Total energy + Delta-G solvation = -4007.218344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.68182 -40.83663 -39.99425 -38.37049 -35.70362 -35.00152 -34.49702 -33.18330 -31.77339 -31.42852 -30.39756 -28.66090 -27.17782 -26.02327 -24.63130 -23.46490 -22.83696 -22.55228 -21.95241 -21.13800 -20.78226 -19.54846 -18.31480 -17.80670 -17.54569 -17.44253 -17.00068 -16.82248 -16.13922 -16.00418 -15.92570 -15.64882 -15.52238 -15.15793 -14.97325 -14.60864 -14.42747 -14.24566 -14.04617 -13.97394 -13.69989 -13.59897 -13.41569 -13.21766 -12.86913 -12.64139 -12.54250 -12.44122 -12.25770 -12.24288 -12.12546 -11.91961 -11.76180 -11.55756 -11.33334 -11.10271 -10.99709 -10.95501 -10.33368 -10.11968 -9.82805 -9.62347 -9.24927 -8.64770 -5.48965 0.42090 0.49363 1.36283 1.48022 1.59002 1.67480 2.16476 2.53928 2.65286 2.88277 2.99788 3.18856 3.42304 3.64046 3.67194 3.76991 3.85559 3.89585 3.99873 4.14233 4.17777 4.21134 4.24314 4.31858 4.39669 4.45664 4.53715 4.57459 4.60178 4.61305 4.62376 4.66456 4.72507 4.81941 4.88694 4.91850 4.94860 5.03282 5.03932 5.14371 5.17548 5.18329 5.18686 5.32922 5.41156 5.57537 5.62763 5.71661 5.91630 6.12202 6.23813 6.49613 6.67074 7.19401 7.30003 8.24883 8.87124 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.002583 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.173638 B =10837.972598 C =12875.552330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.087 4.087 3 Si 1.113 2.887 4 H -0.303 1.303 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.290 4.290 8 H 0.040 0.960 9 N -0.659 5.659 10 C 0.092 3.908 11 C 0.089 3.911 12 C 0.104 3.896 13 C -0.128 4.128 14 C -0.135 4.135 15 C 0.061 3.939 16 H 0.112 0.888 17 C 0.113 3.887 18 N -0.718 5.718 19 C 0.509 3.491 20 O -0.587 6.587 21 C -0.127 4.127 22 C -0.057 4.057 23 C -0.092 4.092 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.132 4.132 27 C -0.130 4.130 28 C -0.135 4.135 29 O -0.364 6.364 30 H 0.244 0.756 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.413 0.587 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.137 0.863 47 H 0.144 0.856 48 H 0.141 0.859 49 H 0.133 0.867 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.528 -4.936 16.020 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.278 4.278 3 Si 0.938 3.062 4 H -0.232 1.232 5 H -0.202 1.202 6 H -0.176 1.176 7 C -0.417 4.417 8 H 0.058 0.942 9 N -0.387 5.387 10 C -0.032 4.032 11 C 0.048 3.952 12 C -0.022 4.022 13 C -0.166 4.166 14 C -0.172 4.172 15 C 0.004 3.996 16 H 0.130 0.870 17 C -0.011 4.011 18 N -0.370 5.370 19 C 0.297 3.703 20 O -0.468 6.468 21 C -0.167 4.167 22 C -0.095 4.095 23 C -0.092 4.092 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.149 4.149 27 C -0.147 4.147 28 C -0.153 4.153 29 O -0.283 6.283 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.248 0.752 42 H 0.138 0.862 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.155 0.845 47 H 0.162 0.838 48 H 0.159 0.841 49 H 0.151 0.849 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 20.188 -4.075 16.028 26.098 hybrid contribution -1.195 -1.962 -0.347 2.324 sum 18.993 -6.037 15.681 25.359 Atomic orbital electron populations 1.71016 1.06786 1.28203 1.55702 1.27189 0.96482 1.04759 0.99398 0.83248 0.73334 0.71462 0.78201 1.23152 1.20233 1.17619 1.19960 0.80791 0.94235 1.46738 0.94191 1.46026 1.00698 1.05606 1.86400 1.23138 0.86621 0.94101 0.99363 1.22827 0.94979 0.95471 0.81931 1.22991 0.87333 0.93378 0.98494 1.23018 0.90799 1.02093 1.00738 1.23109 1.01549 1.00866 0.91721 1.23378 0.84534 0.93639 0.98046 0.86998 1.21809 0.97383 0.97318 0.84575 1.45959 1.58987 1.11346 1.20659 1.21162 0.78613 0.84158 0.86381 1.90665 1.55059 1.24081 1.76960 1.21643 1.02033 1.00183 0.92853 1.20217 1.00772 0.96007 0.92537 1.19935 0.93816 1.00092 0.95350 1.21311 1.00755 0.99852 0.92234 1.21481 0.94771 0.99342 0.98531 1.21487 0.94766 0.99803 0.98888 1.21424 1.00855 0.99563 0.92905 1.21277 0.94325 1.01022 0.98711 1.88333 1.36331 1.82450 1.21163 0.94742 0.90188 0.93153 0.95259 0.91235 0.87901 0.87868 0.86183 0.89999 0.93941 0.88973 0.75151 0.86176 0.88580 0.92075 0.90246 0.84487 0.83775 0.84119 0.84894 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.18 13.70 21.65 0.30 -64.89 16 2 C -0.09 -5.44 5.50 84.86 0.47 -4.97 16 3 Si 1.11 54.69 25.17 68.60 1.73 56.42 16 4 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 5 H -0.28 -12.68 6.49 99.48 0.65 -12.04 16 6 H -0.25 -10.73 6.18 99.48 0.61 -10.12 16 7 C -0.29 -17.87 11.08 84.04 0.93 -16.93 16 8 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 9 N -0.66 -33.34 3.70 -740.00 -2.74 -36.08 16 10 C 0.09 3.68 5.25 83.57 0.44 4.12 16 11 C 0.09 2.84 1.56 -10.81 -0.02 2.83 16 12 C 0.10 4.09 8.24 83.47 0.69 4.78 16 13 C -0.13 -2.46 6.49 31.76 0.21 -2.26 16 14 C -0.13 -2.06 6.56 31.96 0.21 -1.85 16 15 C 0.06 1.26 3.62 31.10 0.11 1.38 16 16 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 17 C 0.11 2.63 5.23 86.38 0.45 3.08 16 18 N -0.72 -17.25 5.47 -463.05 -2.53 -19.78 16 19 C 0.51 13.42 7.83 87.66 0.69 14.10 16 20 O -0.59 -19.76 15.98 -3.04 -0.05 -19.80 16 21 C -0.13 -2.57 5.68 29.85 0.17 -2.40 16 22 C -0.06 -1.21 4.63 29.85 0.14 -1.08 16 23 C -0.09 -1.82 5.13 -19.87 -0.10 -1.93 16 24 C -0.12 -2.06 9.70 22.27 0.22 -1.85 16 25 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 26 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 27 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 28 C -0.14 -2.80 9.70 22.27 0.22 -2.59 16 29 O -0.36 -11.66 10.69 -148.98 -1.59 -13.25 16 30 H 0.24 16.50 8.73 -92.71 -0.81 15.69 16 31 H 0.08 2.86 7.59 -2.39 -0.02 2.84 16 32 H 0.05 2.13 4.80 -2.39 -0.01 2.12 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 2.42 7.99 -2.38 -0.02 2.40 16 35 H 0.10 1.70 7.93 -2.39 -0.02 1.68 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.27 7.85 -2.39 -0.02 1.25 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.41 8.80 8.40 -92.71 -0.78 8.02 16 42 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.06 1.50 8.04 -2.38 -0.02 1.48 16 45 H 0.08 1.65 8.04 -2.39 -0.02 1.63 16 46 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 47 H 0.14 1.39 8.06 -2.90 -0.02 1.37 16 48 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 49 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 50 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -84.65 403.69 0.55 -84.09 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.04 Total: 24.43 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 5.48 Total: -11.14 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -4.97 Total: -120.74 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.64 Total: -33.06 kcal Atomic # 14 Polarization: 54.69 SS G_CDS: 1.73 Total: 56.42 kcal Total: -84.65 0.55 -84.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570235725.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.519 kcal (2) G-P(sol) polarization free energy of solvation -84.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds