Wall clock time and date at job start Wed Apr 1 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00203 * 2 1 4 4 H 1.48492 * 109.47246 * 270.00336 * 3 2 1 5 5 H 1.48503 * 109.46618 * 30.00134 * 3 2 1 6 6 H 1.48498 * 109.47144 * 149.99665 * 3 2 1 7 7 C 1.38816 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99725 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00361 * 180.02562 * 7 2 1 10 10 C 1.46491 * 120.00340 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.49812 * 300.06046 * 10 9 7 12 12 O 1.42894 * 109.46906 * 59.93544 * 11 10 9 13 13 C 1.53045 * 109.49940 * 179.97438 * 10 9 7 14 14 C 1.53038 * 109.53856 * 301.38330 * 13 10 9 15 15 C 1.53194 * 109.31323 * 298.63439 * 14 13 10 16 16 N 1.46922 * 108.77741 * 54.63474 * 15 14 13 17 17 C 1.34772 * 120.63565 * 126.36865 * 16 15 14 18 18 O 1.21548 * 120.00699 * 184.94524 * 17 16 15 19 19 C 1.47845 * 119.99646 * 4.94964 * 17 16 15 20 20 C 1.39581 * 120.14413 * 220.44701 * 19 17 16 21 21 C 1.37959 * 119.85591 * 180.02562 * 20 19 17 22 22 C 1.38367 * 120.14050 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.84902 * 179.71789 * 22 21 20 24 24 C 1.52993 * 117.49798 * 188.74884 * 23 22 21 25 25 C 1.53000 * 117.49634 * 120.08868 * 23 22 21 26 26 C 1.38353 * 120.29632 * 359.97438 * 22 21 20 27 27 C 1.37963 * 120.14468 * 0.02562 * 26 22 21 28 28 C 1.46932 * 118.73603 * 306.64628 * 16 15 14 29 29 H 0.96997 * 120.00066 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99485 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47101 * 179.97438 * 11 10 9 32 32 H 1.08995 * 109.46789 * 299.93538 * 11 10 9 33 33 H 0.96704 * 114.00116 * 180.02562 * 12 11 10 34 34 H 1.09003 * 109.45924 * 181.36416 * 13 10 9 35 35 H 1.08994 * 109.45007 * 61.39433 * 13 10 9 36 36 H 1.09004 * 109.50078 * 178.68581 * 14 13 10 37 37 H 1.09003 * 109.49821 * 58.58390 * 14 13 10 38 38 H 1.09005 * 109.58497 * 294.84862 * 15 14 13 39 39 H 1.08992 * 109.59118 * 174.42393 * 15 14 13 40 40 H 1.07999 * 120.07052 * 0.02562 * 20 19 17 41 41 H 1.07997 * 119.93119 * 179.97438 * 21 20 19 42 42 H 1.08998 * 115.55025 * 334.42335 * 23 22 21 43 43 H 1.09008 * 117.49720 * 0.02562 * 24 23 22 44 44 H 1.08996 * 117.50411 * 145.02266 * 24 23 22 45 45 H 1.08996 * 117.49947 * 214.97854 * 25 23 22 46 46 H 1.09006 * 117.49778 * 359.97438 * 25 23 22 47 47 H 1.07993 * 119.93239 * 179.97438 * 26 22 21 48 48 H 1.08001 * 120.07496 * 180.02562 * 27 26 22 49 49 H 1.09000 * 109.58293 * 173.14665 * 28 16 15 50 50 H 1.09002 * 109.58336 * 293.56507 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 3.7413 -3.2746 1.2479 12 8 2.3362 -3.5348 1.2468 13 6 5.6169 -2.1919 0.0000 14 6 5.9832 -1.3602 -1.2313 15 6 5.6380 -2.1503 -2.4975 16 7 4.2248 -2.5476 -2.4364 17 6 3.3839 -2.2514 -3.4471 18 8 2.1994 -2.5051 -3.3464 19 6 3.9021 -1.6179 -4.6783 20 6 3.1750 -0.6041 -5.3044 21 6 3.6639 -0.0174 -6.4533 22 6 4.8719 -0.4323 -6.9854 23 6 5.3968 0.2087 -8.2443 24 6 6.6263 -0.4236 -8.8993 25 6 6.7522 0.9140 -8.1657 26 6 5.5976 -1.4366 -6.3698 27 6 5.1199 -2.0316 -5.2203 28 6 3.7444 -3.2687 -1.2498 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 0.0004 31 1 4.2862 -4.2187 1.2473 32 1 4.0045 -2.7045 2.1388 33 1 2.0294 -4.0414 2.0112 34 1 6.1612 -3.1360 -0.0245 35 1 5.8841 -1.6420 0.9023 36 1 7.0512 -1.1421 -1.2185 37 1 5.4206 -0.4266 -1.2203 38 1 6.2654 -3.0397 -2.5557 39 1 5.8042 -1.5254 -3.3749 40 1 2.2318 -0.2797 -4.8902 41 1 3.1022 0.7668 -6.9389 42 1 4.6422 0.6404 -8.9018 43 1 7.0554 -1.3036 -8.4199 44 1 6.6810 -0.4077 -9.9878 45 1 6.8896 1.8093 -8.7719 46 1 7.2642 0.9146 -7.2033 47 1 6.5395 -1.7562 -6.7904 48 1 5.6875 -2.8152 -4.7405 49 1 2.6616 -3.3814 -1.3043 50 1 4.2143 -4.2512 -1.2042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570293574.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:30 Heat of formation + Delta-G solvation = 3.702599 kcal Electronic energy + Delta-G solvation = -31679.765230 eV Core-core repulsion = 27673.816396 eV Total energy + Delta-G solvation = -4005.948834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.41554 -39.27927 -37.81983 -36.50604 -35.73430 -33.91103 -32.31089 -31.28944 -30.94716 -30.64186 -29.13497 -25.93878 -25.40989 -23.87307 -23.20786 -23.00978 -22.37134 -21.66820 -20.73832 -19.62152 -18.39505 -17.73796 -17.00566 -16.73668 -16.29704 -15.72982 -15.40378 -15.13413 -14.71478 -14.60264 -14.31980 -14.20089 -13.95268 -13.63421 -13.38485 -13.22932 -13.10326 -12.88807 -12.63791 -12.54585 -12.42646 -12.04753 -11.84652 -11.77990 -11.51816 -11.29983 -11.08518 -10.98816 -10.84555 -10.79229 -10.67650 -10.58783 -10.48948 -10.10441 -9.90226 -9.43032 -9.28472 -8.92504 -8.90114 -8.81065 -8.51655 -8.04840 -7.05697 -5.47458 -2.82330 1.01024 1.38722 3.11940 3.38511 3.44629 3.48159 3.54742 3.65420 4.00719 4.31105 4.58701 4.68666 4.71330 4.77174 4.78844 4.83715 4.91060 5.05702 5.08117 5.13706 5.24652 5.32667 5.35808 5.40124 5.52420 5.53843 5.56064 5.66029 5.72674 5.78508 5.80180 5.83012 5.87271 5.88904 5.95606 6.02424 6.05645 6.09017 6.16952 6.22532 6.31514 6.48386 6.52726 6.56759 6.58726 6.87739 6.94741 7.11146 7.94181 8.33341 8.42318 8.72716 8.77885 9.50664 10.17499 10.32355 11.71440 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.003771 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.178992 B = 7423.657503 C = 8266.531464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.866 3.134 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.283 1.283 7 C -0.205 4.205 8 H 0.116 0.884 9 N -0.730 5.730 10 C 0.194 3.806 11 C 0.077 3.923 12 O -0.534 6.534 13 C -0.119 4.119 14 C -0.133 4.133 15 C 0.100 3.900 16 N -0.592 5.592 17 C 0.555 3.445 18 O -0.509 6.509 19 C -0.119 4.119 20 C -0.060 4.060 21 C -0.119 4.119 22 C -0.040 4.040 23 C -0.118 4.118 24 C -0.177 4.177 25 C -0.169 4.169 26 C -0.132 4.132 27 C -0.090 4.090 28 C 0.112 3.888 29 H 0.253 0.747 30 H 0.357 0.643 31 H 0.025 0.975 32 H 0.038 0.962 33 H 0.355 0.645 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.125 0.875 48 H 0.130 0.870 49 H 0.110 0.890 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.844 -4.298 -11.798 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.194 4.194 3 Si 0.698 3.302 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.210 1.210 7 C -0.335 4.335 8 H 0.134 0.866 9 N -0.372 5.372 10 C 0.101 3.899 11 C -0.004 4.004 12 O -0.336 6.336 13 C -0.157 4.157 14 C -0.171 4.171 15 C -0.023 4.023 16 N -0.324 5.324 17 C 0.342 3.658 18 O -0.384 6.384 19 C -0.122 4.122 20 C -0.079 4.079 21 C -0.137 4.137 22 C -0.040 4.040 23 C -0.136 4.136 24 C -0.214 4.214 25 C -0.206 4.206 26 C -0.150 4.150 27 C -0.109 4.109 28 C -0.012 4.012 29 H 0.063 0.937 30 H 0.191 0.809 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.200 0.800 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.131 0.869 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.143 0.857 48 H 0.148 0.852 49 H 0.128 0.872 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.975 -4.147 -12.303 22.173 hybrid contribution 0.682 1.190 0.691 1.536 sum 18.656 -2.958 -11.611 22.173 Atomic orbital electron populations 1.69678 1.04785 1.24722 1.59413 1.24599 0.95020 0.96139 1.03672 0.86823 0.79153 0.86845 0.77372 1.21708 1.22159 1.20965 1.19393 0.79930 0.95299 1.38830 0.86619 1.42816 1.04434 1.00636 1.89307 1.19830 0.89787 0.88051 0.92184 1.22646 0.82954 0.96180 0.98654 1.86951 1.21947 1.77101 1.47615 1.21674 0.95701 1.00092 0.98234 1.21881 1.00722 0.99865 0.94647 1.21985 0.82481 0.98708 0.99128 1.47666 1.08842 1.57264 1.18668 1.18189 0.85900 0.78885 0.82794 1.90853 1.14961 1.52190 1.80399 1.20099 0.95882 0.99139 0.97078 1.21316 0.99207 0.93583 0.93816 1.20906 0.95892 1.00552 0.96344 1.19237 0.94554 0.95567 0.94685 1.21065 0.91669 1.03975 0.96938 1.23079 1.01387 0.97110 0.99792 1.23039 0.98820 0.96112 1.02610 1.20888 1.00506 0.97495 0.96100 1.21341 0.94427 0.99468 0.95633 1.22012 1.03191 0.91951 0.84009 0.93691 0.80940 0.95667 0.94338 0.80026 0.91475 0.91554 0.91218 0.91026 0.91882 0.89369 0.84691 0.85550 0.86875 0.88275 0.88491 0.88483 0.88466 0.85718 0.85241 0.87167 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.05 13.97 55.49 0.78 -30.28 16 2 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 3 Si 0.87 23.10 27.74 -169.99 -4.71 18.38 16 4 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 5 H -0.29 -8.02 7.11 56.52 0.40 -7.62 16 6 H -0.28 -7.03 6.52 56.52 0.37 -6.66 16 7 C -0.20 -5.88 8.68 -15.06 -0.13 -6.02 16 8 H 0.12 3.68 5.49 -52.49 -0.29 3.39 16 9 N -0.73 -17.14 4.55 -47.33 -0.22 -17.35 16 10 C 0.19 3.59 0.68 -131.92 -0.09 3.50 16 11 C 0.08 1.32 6.08 37.16 0.23 1.54 16 12 O -0.53 -10.61 10.09 -35.23 -0.36 -10.97 16 13 C -0.12 -1.67 4.77 -26.69 -0.13 -1.80 16 14 C -0.13 -1.79 5.91 -26.61 -0.16 -1.95 16 15 C 0.10 1.32 4.90 -3.71 -0.02 1.31 16 16 N -0.59 -10.49 2.90 -174.14 -0.50 -10.99 16 17 C 0.56 11.27 7.33 -12.33 -0.09 11.18 16 18 O -0.51 -12.91 16.35 5.32 0.09 -12.83 16 19 C -0.12 -1.97 5.14 -104.97 -0.54 -2.51 16 20 C -0.06 -0.99 9.65 -39.18 -0.38 -1.37 16 21 C -0.12 -1.56 9.72 -39.64 -0.39 -1.95 16 22 C -0.04 -0.46 5.62 -104.53 -0.59 -1.05 16 23 C -0.12 -1.05 6.03 -91.77 -0.55 -1.61 16 24 C -0.18 -1.27 9.86 -26.70 -0.26 -1.53 16 25 C -0.17 -1.28 10.17 -26.69 -0.27 -1.55 16 26 C -0.13 -1.44 9.28 -39.64 -0.37 -1.81 16 27 C -0.09 -1.14 7.37 -39.18 -0.29 -1.43 16 28 C 0.11 2.13 4.83 -3.93 -0.02 2.11 16 29 H 0.25 8.07 8.31 -40.82 -0.34 7.73 16 30 H 0.36 8.42 4.29 -40.82 -0.17 8.25 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.35 5.31 9.12 45.56 0.42 5.72 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.18 6.75 -51.93 -0.35 0.83 16 38 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 39 H 0.09 1.10 4.68 -51.93 -0.24 0.86 16 40 H 0.14 2.46 8.06 -52.49 -0.42 2.04 16 41 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 0.67 6.16 -51.92 -0.32 0.35 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.13 1.04 6.00 -52.49 -0.31 0.73 16 48 H 0.13 1.38 6.56 -52.49 -0.34 1.04 16 49 H 0.11 2.65 5.66 -51.93 -0.29 2.36 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 386.50 15.07 5.82 5.82 Total: -1.00 -37.74 386.50 -9.82 -47.56 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -6.58 Total: 15.70 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -4.14 Total: -5.05 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.06 Total: -58.62 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.27 Total: -23.80 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.71 Total: 18.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.74 -9.82 -47.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570293574.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.264 kcal (2) G-P(sol) polarization free energy of solvation -37.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds