Wall clock time and date at job start Wed Apr 1 2020 02:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00203 * 2 1 4 4 H 1.48492 * 109.47246 * 270.00336 * 3 2 1 5 5 H 1.48503 * 109.46618 * 30.00134 * 3 2 1 6 6 H 1.48498 * 109.47144 * 149.99665 * 3 2 1 7 7 C 1.38816 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99725 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00361 * 180.02562 * 7 2 1 10 10 C 1.46491 * 120.00340 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.49812 * 300.06046 * 10 9 7 12 12 O 1.42894 * 109.46906 * 59.93544 * 11 10 9 13 13 C 1.53045 * 109.49940 * 179.97438 * 10 9 7 14 14 C 1.53038 * 109.53856 * 301.38330 * 13 10 9 15 15 C 1.53194 * 109.31323 * 298.63439 * 14 13 10 16 16 N 1.46922 * 108.77741 * 54.63474 * 15 14 13 17 17 C 1.34772 * 120.63565 * 126.36865 * 16 15 14 18 18 O 1.21548 * 120.00699 * 184.94524 * 17 16 15 19 19 C 1.47845 * 119.99646 * 4.94964 * 17 16 15 20 20 C 1.39581 * 120.14413 * 220.44701 * 19 17 16 21 21 C 1.37959 * 119.85591 * 180.02562 * 20 19 17 22 22 C 1.38367 * 120.14050 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.84902 * 179.71789 * 22 21 20 24 24 C 1.52993 * 117.49798 * 188.74884 * 23 22 21 25 25 C 1.53000 * 117.49634 * 120.08868 * 23 22 21 26 26 C 1.38353 * 120.29632 * 359.97438 * 22 21 20 27 27 C 1.37963 * 120.14468 * 0.02562 * 26 22 21 28 28 C 1.46932 * 118.73603 * 306.64628 * 16 15 14 29 29 H 0.96997 * 120.00066 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99485 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47101 * 179.97438 * 11 10 9 32 32 H 1.08995 * 109.46789 * 299.93538 * 11 10 9 33 33 H 0.96704 * 114.00116 * 180.02562 * 12 11 10 34 34 H 1.09003 * 109.45924 * 181.36416 * 13 10 9 35 35 H 1.08994 * 109.45007 * 61.39433 * 13 10 9 36 36 H 1.09004 * 109.50078 * 178.68581 * 14 13 10 37 37 H 1.09003 * 109.49821 * 58.58390 * 14 13 10 38 38 H 1.09005 * 109.58497 * 294.84862 * 15 14 13 39 39 H 1.08992 * 109.59118 * 174.42393 * 15 14 13 40 40 H 1.07999 * 120.07052 * 0.02562 * 20 19 17 41 41 H 1.07997 * 119.93119 * 179.97438 * 21 20 19 42 42 H 1.08998 * 115.55025 * 334.42335 * 23 22 21 43 43 H 1.09008 * 117.49720 * 0.02562 * 24 23 22 44 44 H 1.08996 * 117.50411 * 145.02266 * 24 23 22 45 45 H 1.08996 * 117.49947 * 214.97854 * 25 23 22 46 46 H 1.09006 * 117.49778 * 359.97438 * 25 23 22 47 47 H 1.07993 * 119.93239 * 179.97438 * 26 22 21 48 48 H 1.08001 * 120.07496 * 180.02562 * 27 26 22 49 49 H 1.09000 * 109.58293 * 173.14665 * 28 16 15 50 50 H 1.09002 * 109.58336 * 293.56507 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 3.7413 -3.2746 1.2479 12 8 2.3362 -3.5348 1.2468 13 6 5.6169 -2.1919 0.0000 14 6 5.9832 -1.3602 -1.2313 15 6 5.6380 -2.1503 -2.4975 16 7 4.2248 -2.5476 -2.4364 17 6 3.3839 -2.2514 -3.4471 18 8 2.1994 -2.5051 -3.3464 19 6 3.9021 -1.6179 -4.6783 20 6 3.1750 -0.6041 -5.3044 21 6 3.6639 -0.0174 -6.4533 22 6 4.8719 -0.4323 -6.9854 23 6 5.3968 0.2087 -8.2443 24 6 6.6263 -0.4236 -8.8993 25 6 6.7522 0.9140 -8.1657 26 6 5.5976 -1.4366 -6.3698 27 6 5.1199 -2.0316 -5.2203 28 6 3.7444 -3.2687 -1.2498 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 0.0004 31 1 4.2862 -4.2187 1.2473 32 1 4.0045 -2.7045 2.1388 33 1 2.0294 -4.0414 2.0112 34 1 6.1612 -3.1360 -0.0245 35 1 5.8841 -1.6420 0.9023 36 1 7.0512 -1.1421 -1.2185 37 1 5.4206 -0.4266 -1.2203 38 1 6.2654 -3.0397 -2.5557 39 1 5.8042 -1.5254 -3.3749 40 1 2.2318 -0.2797 -4.8902 41 1 3.1022 0.7668 -6.9389 42 1 4.6422 0.6404 -8.9018 43 1 7.0554 -1.3036 -8.4199 44 1 6.6810 -0.4077 -9.9878 45 1 6.8896 1.8093 -8.7719 46 1 7.2642 0.9146 -7.2033 47 1 6.5395 -1.7562 -6.7904 48 1 5.6875 -2.8152 -4.7405 49 1 2.6616 -3.3814 -1.3043 50 1 4.2143 -4.2512 -1.2042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570293574.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:29 Heat of formation + Delta-G solvation = -24.681509 kcal Electronic energy + Delta-G solvation = -31680.996057 eV Core-core repulsion = 27673.816396 eV Total energy + Delta-G solvation = -4007.179661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.70112 -40.38495 -39.21130 -37.43430 -37.17924 -35.66578 -34.07589 -32.69865 -32.22876 -31.74963 -30.87614 -27.27385 -26.64054 -25.30170 -24.91951 -23.92287 -23.08111 -22.84078 -21.74283 -20.88242 -19.90662 -19.68851 -18.30810 -17.90187 -17.66768 -17.14731 -16.53486 -16.40297 -16.22180 -15.88743 -15.63776 -15.60155 -15.22068 -14.91255 -14.64843 -14.57858 -14.46668 -14.30548 -13.96618 -13.84222 -13.65418 -13.48402 -13.35783 -13.04513 -12.77265 -12.57518 -12.52409 -12.26599 -12.14909 -12.01176 -11.93127 -11.71451 -11.55795 -11.42722 -11.35854 -11.23296 -10.98955 -10.74333 -10.57553 -9.95915 -9.66467 -9.47940 -9.06699 -7.83751 -5.14463 -0.08248 0.34792 1.24372 1.31782 1.37320 1.75920 2.14012 2.53855 2.66194 3.15616 3.34047 3.48841 3.52753 3.65832 3.69308 3.82198 3.90847 3.95915 4.02727 4.08215 4.15720 4.18488 4.26846 4.29077 4.40215 4.51050 4.55478 4.58754 4.63140 4.72190 4.78735 4.79503 4.84781 4.87121 4.95372 5.00466 5.00935 5.05762 5.14549 5.17866 5.30450 5.33226 5.37380 5.41413 5.45268 5.56703 5.71945 5.89573 6.12091 6.43996 6.53552 7.11572 7.29848 7.31081 7.98289 8.13635 9.39708 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.003771 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.178992 B = 7423.657503 C = 8266.531464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.998 5.998 2 C -0.088 4.088 3 Si 0.936 3.064 4 H -0.298 1.298 5 H -0.303 1.303 6 H -0.247 1.247 7 C -0.161 4.161 8 H 0.077 0.923 9 N -0.733 5.733 10 C 0.179 3.821 11 C 0.073 3.927 12 O -0.574 6.574 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.092 3.908 16 N -0.588 5.588 17 C 0.542 3.458 18 O -0.587 6.587 19 C -0.146 4.146 20 C -0.092 4.092 21 C -0.124 4.124 22 C -0.028 4.028 23 C -0.141 4.141 24 C -0.162 4.162 25 C -0.163 4.163 26 C -0.120 4.120 27 C -0.075 4.075 28 C 0.116 3.884 29 H 0.245 0.755 30 H 0.358 0.642 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.374 0.626 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.033 0.967 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.138 0.862 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.166 0.834 48 H 0.158 0.842 49 H 0.045 0.955 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.861 -4.941 -13.114 29.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.652 5.652 2 C -0.275 4.275 3 Si 0.766 3.234 4 H -0.226 1.226 5 H -0.230 1.230 6 H -0.172 1.172 7 C -0.293 4.293 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.088 3.912 11 C -0.007 4.007 12 O -0.380 6.380 13 C -0.149 4.149 14 C -0.171 4.171 15 C -0.029 4.029 16 N -0.319 5.319 17 C 0.331 3.669 18 O -0.468 6.468 19 C -0.149 4.149 20 C -0.111 4.111 21 C -0.142 4.142 22 C -0.028 4.028 23 C -0.159 4.159 24 C -0.199 4.199 25 C -0.200 4.200 26 C -0.138 4.138 27 C -0.094 4.094 28 C -0.008 4.008 29 H 0.054 0.946 30 H 0.192 0.808 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.221 0.779 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.052 0.948 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.156 0.844 42 H 0.135 0.865 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.116 0.884 47 H 0.183 0.817 48 H 0.176 0.824 49 H 0.064 0.936 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 25.136 -4.829 -13.585 28.977 hybrid contribution -1.415 1.224 1.016 2.129 sum 23.721 -3.606 -12.569 27.087 Atomic orbital electron populations 1.69903 1.07012 1.24992 1.63333 1.25366 0.95907 1.00276 1.06000 0.85649 0.79046 0.81748 0.76914 1.22615 1.23025 1.17189 1.19230 0.82428 0.93450 1.34176 0.90564 1.42831 1.02501 1.03069 1.89086 1.20380 0.92811 0.85742 0.92236 1.22730 0.82005 0.98210 0.97721 1.86903 1.24165 1.77858 1.49093 1.21710 0.91644 1.02574 0.99005 1.21934 1.03000 0.97943 0.94193 1.22434 0.79746 1.00951 0.99744 1.47851 1.10721 1.56074 1.17256 1.18957 0.85292 0.78147 0.84454 1.90805 1.18321 1.55540 1.82147 1.19905 0.98186 1.00286 0.96491 1.21157 0.98472 0.95582 0.95881 1.21019 0.97144 1.00785 0.95252 1.19577 0.93229 0.94893 0.95131 1.21106 0.92800 1.05779 0.96196 1.23219 0.98816 0.97112 1.00724 1.23127 0.96856 0.97065 1.02978 1.21314 1.01456 0.96149 0.94833 1.21557 0.92489 0.99468 0.95855 1.21832 0.99848 0.94195 0.84970 0.94640 0.80820 0.91066 0.94065 0.77909 0.87139 0.90652 0.86490 0.94767 0.87165 0.88483 0.88994 0.84444 0.86479 0.87216 0.87088 0.87351 0.88448 0.81704 0.82442 0.93606 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -1.00 -71.35 13.97 21.65 0.30 -71.05 16 2 C -0.09 -5.70 5.50 84.86 0.47 -5.23 16 3 Si 0.94 50.31 27.74 68.60 1.90 52.22 16 4 H -0.30 -16.24 7.11 99.48 0.71 -15.53 16 5 H -0.30 -16.54 7.11 99.48 0.71 -15.83 16 6 H -0.25 -11.63 6.52 99.48 0.65 -10.98 16 7 C -0.16 -9.81 8.68 84.03 0.73 -9.08 16 8 H 0.08 5.27 5.49 -2.91 -0.02 5.25 16 9 N -0.73 -34.79 4.55 -303.65 -1.38 -36.17 16 10 C 0.18 6.32 0.68 3.54 0.00 6.33 16 11 C 0.07 2.38 6.08 71.98 0.44 2.82 16 12 O -0.57 -23.61 10.09 -148.98 -1.50 -25.11 16 13 C -0.11 -2.58 4.77 30.62 0.15 -2.44 16 14 C -0.13 -2.94 5.91 30.67 0.18 -2.76 16 15 C 0.09 2.04 4.90 86.36 0.42 2.47 16 16 N -0.59 -20.56 2.90 -823.15 -2.39 -22.95 16 17 C 0.54 23.34 7.33 86.79 0.64 23.98 16 18 O -0.59 -33.17 16.35 -3.87 -0.06 -33.23 16 19 C -0.15 -4.98 5.14 -20.09 -0.10 -5.08 16 20 C -0.09 -3.28 9.65 22.53 0.22 -3.06 16 21 C -0.12 -3.33 9.72 22.23 0.22 -3.11 16 22 C -0.03 -0.57 5.62 -19.81 -0.11 -0.68 16 23 C -0.14 -2.03 6.03 -11.54 -0.07 -2.10 16 24 C -0.16 -1.53 9.86 30.62 0.30 -1.23 16 25 C -0.16 -1.79 10.17 30.62 0.31 -1.48 16 26 C -0.12 -2.14 9.28 22.23 0.21 -1.93 16 27 C -0.08 -1.70 7.37 22.53 0.17 -1.54 16 28 C 0.12 4.39 4.83 86.22 0.42 4.81 16 29 H 0.24 16.88 8.31 -92.71 -0.77 16.11 16 30 H 0.36 16.69 4.29 -92.70 -0.40 16.30 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.37 11.54 9.12 -74.05 -0.68 10.87 16 34 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.03 1.03 6.75 -2.39 -0.02 1.01 16 38 H 0.11 1.51 8.12 -2.38 -0.02 1.49 16 39 H 0.10 2.02 4.68 -2.39 -0.01 2.01 16 40 H 0.09 3.94 8.06 -2.91 -0.02 3.92 16 41 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 42 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.11 0.82 6.16 -2.38 -0.01 0.80 16 44 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.17 1.68 6.00 -2.91 -0.02 1.66 16 48 H 0.16 2.60 6.56 -2.91 -0.02 2.58 16 49 H 0.05 2.36 5.66 -2.39 -0.01 2.35 16 50 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -96.96 386.50 1.30 -95.66 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -0.15 Total: 39.96 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 4.57 Total: 0.67 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -3.47 Total: -130.17 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -1.57 Total: -58.34 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 1.90 Total: 52.22 kcal Total: -96.96 1.30 -95.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570293574.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.980 kcal (2) G-P(sol) polarization free energy of solvation -96.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds