Wall clock time and date at job start Wed Apr 1 2020 03:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 C 1.53784 * 113.61355 * 274.13660 * 11 10 9 13 13 C 1.53960 * 87.01808 * 220.04813 * 12 11 10 14 14 N 1.46505 * 113.66788 * 139.93250 * 13 12 11 15 15 C 1.34780 * 120.00111 * 107.43575 * 14 13 12 16 16 O 1.21284 * 119.99821 * 0.02562 * 15 14 13 17 17 C 1.50691 * 119.99696 * 179.97438 * 15 14 13 18 18 C 1.50701 * 109.82362 * 84.12074 * 17 15 14 19 19 C 1.38231 * 120.00412 * 90.42234 * 18 17 15 20 20 C 1.38232 * 120.00048 * 179.76832 * 19 18 17 21 21 C 1.38235 * 120.00260 * 0.50443 * 20 19 18 22 22 C 1.38235 * 119.99477 * 359.74974 * 21 20 19 23 23 C 1.38232 * 119.99669 * 270.69701 * 18 17 15 24 24 C 1.54384 * 109.82844 * 205.00236 * 17 15 14 25 25 C 1.55297 * 102.25483 * 98.15900 * 24 17 15 26 26 C 1.54955 * 100.93982 * 34.13351 * 25 24 17 27 27 O 1.43229 * 109.83478 * 323.13620 * 17 15 14 28 28 C 1.53781 * 113.61494 * 176.52844 * 11 10 9 29 29 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 32 32 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 33 33 H 1.08997 * 112.85267 * 45.32803 * 11 10 9 34 34 H 1.09004 * 113.61160 * 334.56145 * 12 11 10 35 35 H 1.08999 * 113.62074 * 105.47017 * 12 11 10 36 36 H 1.08998 * 113.53677 * 270.80811 * 13 12 11 37 37 H 0.96997 * 119.99822 * 287.44249 * 14 13 12 38 38 H 1.07999 * 120.00042 * 0.02562 * 19 18 17 39 39 H 1.08004 * 120.00339 * 180.23248 * 20 19 18 40 40 H 1.07997 * 120.00412 * 179.72455 * 21 20 19 41 41 H 1.08009 * 119.99626 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.00540 * 0.02562 * 23 18 17 43 43 H 1.09007 * 110.84669 * 216.35221 * 24 17 15 44 44 H 1.09000 * 110.84601 * 339.76258 * 24 17 15 45 45 H 1.09000 * 111.13053 * 152.04920 * 25 24 17 46 46 H 1.09002 * 111.12601 * 276.21743 * 25 24 17 47 47 H 1.09002 * 110.30706 * 82.47372 * 26 25 24 48 48 H 1.08998 * 110.30637 * 204.53962 * 26 25 24 49 49 H 1.09001 * 113.60987 * 254.52402 * 28 11 10 50 50 H 1.08999 * 113.61627 * 25.42900 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 6 0.5855 -5.2147 1.4199 13 6 0.6856 -6.6791 0.9553 14 7 1.2274 -7.5833 1.9728 15 6 0.4151 -8.4583 2.5981 16 8 -0.7643 -8.4976 2.3181 17 6 0.9726 -9.3887 3.6443 18 6 1.0261 -8.6863 4.9765 19 6 -0.0521 -8.7561 5.8386 20 6 -0.0011 -8.1158 7.0626 21 6 1.1242 -7.3969 7.4202 22 6 2.2004 -7.3227 6.5559 23 6 2.1514 -7.9674 5.3340 24 6 0.0858 -10.6478 3.7514 25 6 0.8615 -11.6725 2.8797 26 6 2.3252 -11.2474 3.1586 27 8 2.2861 -9.8154 3.2648 28 6 1.7324 -6.2023 -0.0654 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6849 -3.7190 -0.8822 32 1 2.6842 -3.7101 0.8977 33 1 0.2522 -4.6861 -0.7026 34 1 1.2921 -4.9579 2.2092 35 1 -0.4326 -4.8945 1.6412 36 1 -0.2302 -7.0544 0.4987 37 1 2.1707 -7.5520 2.1966 38 1 -0.9329 -9.3145 5.5576 39 1 -0.8421 -8.1735 7.7378 40 1 1.1623 -6.8930 8.3746 41 1 3.0795 -6.7607 6.8351 42 1 2.9920 -7.9087 4.6585 43 1 0.0196 -10.9889 4.7846 44 1 -0.9069 -10.4590 3.3428 45 1 0.6780 -12.6930 3.2159 46 1 0.6135 -11.5580 1.8245 47 1 2.6753 -11.6867 4.0928 48 1 2.9707 -11.5497 2.3340 49 1 1.6386 -6.6781 -1.0415 50 1 2.7530 -6.2159 0.3171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570578201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:24 Heat of formation + Delta-G solvation = -23.386101 kcal Electronic energy + Delta-G solvation = -30230.112006 eV Core-core repulsion = 26222.988518 eV Total energy + Delta-G solvation = -4007.123488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.28119 -39.48443 -38.69080 -37.91984 -34.56429 -33.38177 -32.88099 -32.13281 -31.02018 -30.77936 -28.59598 -26.76023 -25.45752 -24.50010 -23.39088 -23.12435 -22.28950 -21.67534 -20.90993 -20.21579 -19.32558 -18.06859 -17.58559 -17.02756 -16.39715 -16.14579 -15.82539 -15.30691 -15.09147 -14.99427 -14.64391 -14.48894 -14.19040 -14.02486 -13.73679 -13.51966 -13.25900 -13.09621 -12.97038 -12.83901 -12.34568 -12.22966 -12.21809 -11.85068 -11.68189 -11.59778 -11.53916 -11.25057 -11.13116 -11.10841 -10.86076 -10.76569 -10.55126 -10.32034 -10.07093 -9.87077 -9.68753 -9.56969 -9.12842 -8.97874 -8.90942 -8.80238 -6.86229 -5.71908 -3.00171 1.01981 1.19093 2.45563 3.07815 3.17894 3.46142 3.50844 3.52881 3.57598 4.06669 4.22460 4.46103 4.59875 4.62099 4.70812 4.72698 4.78811 4.80172 4.86302 4.88914 4.99117 5.08952 5.17397 5.20804 5.27629 5.32386 5.34874 5.38979 5.60109 5.61732 5.67803 5.71753 5.77089 5.80567 5.89037 5.97022 6.10184 6.13979 6.18536 6.22365 6.29008 6.29951 6.35332 6.46850 6.50323 6.68227 6.74249 6.82881 6.97389 7.48893 7.73512 8.11948 8.47283 9.58088 10.17700 10.52255 11.51106 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.002451 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.949048 B =11420.487520 C =12580.473486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.166 3.834 11 C -0.111 4.111 12 C -0.137 4.137 13 C 0.115 3.885 14 N -0.700 5.700 15 C 0.524 3.476 16 O -0.536 6.536 17 C 0.137 3.863 18 C -0.097 4.097 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.089 4.089 24 C -0.140 4.140 25 C -0.157 4.157 26 C 0.051 3.949 27 O -0.362 6.362 28 C -0.136 4.136 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.405 0.595 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.071 0.929 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -27.591 12.063 30.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.038 3.962 11 C -0.130 4.130 12 C -0.175 4.175 13 C 0.011 3.989 14 N -0.349 5.349 15 C 0.309 3.691 16 O -0.413 6.413 17 C 0.094 3.906 18 C -0.098 4.098 19 C -0.121 4.121 20 C -0.140 4.140 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.107 4.107 24 C -0.177 4.177 25 C -0.194 4.194 26 C -0.025 4.025 27 O -0.281 6.281 28 C -0.175 4.175 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.240 0.760 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.107 0.893 44 H 0.124 0.876 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.083 0.917 48 H 0.109 0.891 49 H 0.090 0.910 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.963 -27.357 11.815 29.946 hybrid contribution 0.487 0.947 0.198 1.083 sum 3.450 -26.410 12.013 29.218 Atomic orbital electron populations 1.69668 1.05095 1.25569 1.57908 1.24745 0.95526 0.97673 1.03199 0.86192 0.78622 0.83915 0.77490 1.21752 1.21798 1.20809 1.19238 0.90993 0.84269 1.42438 0.91271 1.42356 1.05906 0.99965 1.89363 1.20590 0.92867 0.85140 0.97575 1.22535 0.99351 0.93932 0.97193 1.23460 1.02439 0.93869 0.97782 1.22756 0.98351 0.88802 0.88981 1.45956 1.12447 1.36717 1.39772 1.20334 0.86574 0.80830 0.81412 1.90695 1.15921 1.70422 1.64284 1.20904 0.84501 0.94437 0.90756 1.19665 0.95683 1.00169 0.94289 1.21036 0.97791 0.99516 0.93731 1.21125 0.98352 0.97944 0.96580 1.21241 0.93665 0.98492 0.99719 1.21197 0.98954 0.99523 0.94246 1.20988 0.97572 0.95495 0.96677 1.23223 1.00767 0.91953 1.01780 1.23295 0.94770 1.00056 1.01301 1.23464 0.97078 0.80381 1.01606 1.88402 1.28091 1.22137 1.89508 1.23320 0.98598 0.96733 0.98807 0.93557 0.78253 0.96359 0.96395 0.88893 0.89802 0.91162 0.87011 0.76032 0.85625 0.85783 0.85915 0.85693 0.85403 0.89338 0.87630 0.89341 0.90066 0.91677 0.89136 0.91013 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.89 13.06 55.49 0.72 -28.16 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -19.05 5.60 -59.91 -0.34 -19.39 16 10 C 0.17 3.39 6.08 -4.04 -0.02 3.36 16 11 C -0.11 -1.82 3.75 -89.81 -0.34 -2.15 16 12 C -0.14 -2.17 7.45 -25.82 -0.19 -2.36 16 13 C 0.12 1.57 4.24 -67.02 -0.28 1.28 16 14 N -0.70 -8.67 5.27 -52.93 -0.28 -8.95 16 15 C 0.52 6.97 6.73 -10.99 -0.07 6.89 16 16 O -0.54 -8.71 15.16 5.55 0.08 -8.62 16 17 C 0.14 1.44 0.98 -92.20 -0.09 1.35 16 18 C -0.10 -1.05 4.80 -104.63 -0.50 -1.55 16 19 C -0.10 -1.04 8.75 -39.59 -0.35 -1.39 16 20 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 21 C -0.11 -1.03 10.05 -39.58 -0.40 -1.43 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 23 C -0.09 -0.93 9.36 -39.58 -0.37 -1.30 16 24 C -0.14 -1.21 4.98 -24.79 -0.12 -1.33 16 25 C -0.16 -1.06 7.16 -24.48 -0.18 -1.24 16 26 C 0.05 0.35 7.78 38.19 0.30 0.65 16 27 O -0.36 -3.48 9.13 -35.23 -0.32 -3.80 16 28 C -0.14 -1.74 7.40 -25.92 -0.19 -1.93 16 29 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.38 10.53 7.67 -40.82 -0.31 10.22 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.37 7.87 -51.93 -0.41 -0.04 16 33 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.11 1.63 7.47 -51.93 -0.39 1.24 16 37 H 0.40 4.39 8.24 -40.82 -0.34 4.05 16 38 H 0.13 1.14 6.84 -52.49 -0.36 0.78 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 42 H 0.13 1.23 7.55 -52.48 -0.40 0.83 16 43 H 0.09 0.64 6.88 -51.92 -0.36 0.29 16 44 H 0.11 1.06 6.76 -51.93 -0.35 0.71 16 45 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 LS Contribution 404.89 15.07 6.10 6.10 Total: -1.00 -33.89 404.89 -10.84 -44.73 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -7.94 Total: 12.08 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -3.85 Total: -11.78 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.11 Total: -56.50 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.24 Total: -12.42 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.89 -10.84 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570578201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.341 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds