Wall clock time and date at job start Wed Apr 1 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00256 * 2 1 4 4 H 1.48508 * 109.47057 * 239.99664 * 3 2 1 5 5 H 1.48498 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47694 * 119.99716 * 3 2 1 7 7 C 1.38821 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00065 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99553 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49079 * 179.97438 * 9 7 2 11 11 C 1.53942 * 86.11777 * 155.36016 * 10 9 7 12 12 C 1.52999 * 113.74456 * 269.15357 * 11 10 9 13 13 C 1.53001 * 109.47163 * 167.11587 * 12 11 10 14 14 O 1.42895 * 109.47230 * 184.71239 * 13 12 11 15 15 N 1.46510 * 113.74002 * 137.95410 * 11 10 9 16 16 C 1.34772 * 120.00074 * 66.09084 * 15 11 10 17 17 O 1.21281 * 120.00016 * 355.57514 * 16 15 11 18 18 C 1.50692 * 120.00092 * 175.58007 * 16 15 11 19 19 C 1.50699 * 109.47304 * 179.97438 * 18 16 15 20 20 C 1.30993 * 120.00274 * 125.66921 * 19 18 16 21 21 C 1.50707 * 120.00173 * 7.96728 * 20 19 18 22 22 C 1.50696 * 109.47432 * 127.36520 * 21 20 19 23 23 C 1.38235 * 120.00006 * 89.99978 * 22 21 20 24 24 C 1.38237 * 119.99618 * 180.27839 * 23 22 21 25 25 C 1.38229 * 120.00328 * 359.49205 * 24 23 22 26 26 C 1.38235 * 119.99859 * 0.50796 * 25 24 23 27 27 C 1.38235 * 119.99776 * 270.02668 * 22 21 20 28 28 C 1.47810 * 134.45976 * 359.87206 * 9 7 2 29 29 H 0.97000 * 119.99751 * 0.02562 * 1 2 3 30 30 H 1.09003 * 113.77072 * 41.06275 * 10 9 7 31 31 H 1.09000 * 113.87290 * 269.67589 * 10 9 7 32 32 H 1.08997 * 109.47444 * 287.11542 * 12 11 10 33 33 H 1.09002 * 109.46743 * 47.11898 * 12 11 10 34 34 H 1.09007 * 109.47082 * 304.70728 * 13 12 11 35 35 H 1.08995 * 109.47365 * 64.71020 * 13 12 11 36 36 H 0.96696 * 114.00127 * 179.97438 * 14 13 12 37 37 H 0.96998 * 119.99822 * 246.08826 * 15 11 10 38 38 H 1.09003 * 109.47289 * 59.99766 * 18 16 15 39 39 H 1.08995 * 109.47158 * 299.99723 * 18 16 15 40 40 H 1.08005 * 119.99962 * 305.66899 * 19 18 16 41 41 H 1.08000 * 120.00530 * 187.96262 * 20 19 18 42 42 H 1.08999 * 109.46506 * 7.36519 * 21 20 19 43 43 H 1.09001 * 109.46743 * 247.36804 * 21 20 19 44 44 H 1.08000 * 119.99722 * 0.02562 * 23 22 21 45 45 H 1.08005 * 119.99458 * 179.72512 * 24 23 22 46 46 H 1.07998 * 120.00187 * 180.23632 * 25 24 23 47 47 H 1.08004 * 119.99985 * 179.72789 * 26 25 24 48 48 H 1.07996 * 120.00457 * 359.97438 * 27 22 21 49 49 H 1.08998 * 113.77504 * 90.37620 * 28 9 7 50 50 H 1.09002 * 113.83923 * 318.90971 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7200 -3.8102 0.0005 11 6 0.3469 -4.0829 0.6409 12 6 0.3643 -4.0562 2.1705 13 6 -1.0720 -4.0153 2.6962 14 8 -1.0549 -3.8798 4.1186 15 7 -0.3334 -5.2614 0.0979 16 6 0.1845 -6.4897 0.2965 17 8 1.2541 -6.6138 0.8546 18 6 -0.5653 -7.7088 -0.1749 19 6 0.2236 -8.9468 0.1658 20 6 -0.3350 -9.9105 0.8551 21 6 -1.8116 -9.8656 1.1534 22 6 -2.4509 -11.1601 0.7218 23 6 -2.5391 -12.2168 1.6086 24 6 -3.1204 -13.4063 1.2108 25 6 -3.6229 -13.5355 -0.0704 26 6 -3.5347 -12.4788 -0.9573 27 6 -2.9486 -11.2911 -0.5612 28 6 -0.1058 -2.7570 0.0024 29 1 -0.4850 0.8401 -0.0004 30 1 2.5623 -4.0325 0.6558 31 1 1.8325 -4.2367 -0.9962 32 1 0.8625 -4.9509 2.5439 33 1 0.9017 -3.1716 2.5124 34 1 -1.5957 -3.1663 2.2567 35 1 -1.5845 -4.9383 2.4253 36 1 -1.9335 -3.8467 4.5211 37 1 -1.1567 -5.1576 -0.4045 38 1 -0.7063 -7.6539 -1.2544 39 1 -1.5372 -7.7503 0.3168 40 1 1.2497 -9.0394 -0.1584 41 1 0.2625 -10.7373 1.2097 42 1 -2.2667 -9.0370 0.6108 43 1 -1.9619 -9.7252 2.2238 44 1 -2.1502 -12.1144 2.6109 45 1 -3.1853 -14.2334 1.9024 46 1 -4.0805 -14.4635 -0.3799 47 1 -3.9234 -12.5813 -1.9597 48 1 -2.8797 -10.4656 -1.2541 49 1 -0.5312 -2.8722 -0.9945 50 1 -0.7190 -2.1399 0.6592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570760274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:40 Heat of formation + Delta-G solvation = 9.445437 kcal Electronic energy + Delta-G solvation = -29423.107268 eV Core-core repulsion = 25417.407462 eV Total energy + Delta-G solvation = -4005.699806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.05782 -39.57596 -38.02376 -36.35518 -35.95130 -33.61127 -32.33583 -31.82091 -31.16866 -30.36989 -28.57680 -27.02108 -26.09080 -25.07198 -23.34634 -22.85344 -21.84797 -21.68335 -20.52379 -18.74268 -18.33673 -17.35187 -17.03740 -16.85818 -16.76999 -15.92059 -15.55191 -15.43888 -15.09253 -14.81949 -14.71414 -14.27968 -14.04382 -13.73042 -13.66938 -13.60098 -13.52756 -13.24502 -12.88586 -12.52814 -12.30599 -12.06088 -11.88250 -11.65662 -11.49390 -11.37684 -11.26393 -11.06215 -10.97702 -10.89127 -10.76207 -10.71192 -10.18973 -9.89477 -9.69524 -9.58299 -9.27973 -9.20932 -9.03419 -8.94546 -8.88410 -8.56678 -6.92719 -5.80552 -3.12093 1.05607 1.11362 2.07160 2.94185 3.39789 3.43716 3.44649 3.50406 3.56782 4.46129 4.48758 4.49729 4.57364 4.68354 4.71850 4.84491 4.89295 5.01378 5.08915 5.16826 5.22338 5.25365 5.30188 5.36057 5.46358 5.48908 5.52031 5.53464 5.74314 5.75052 5.75627 5.82798 5.89785 5.95671 6.17583 6.22604 6.33647 6.34347 6.46770 6.50263 6.53049 6.65874 6.66394 6.74817 6.76850 6.85090 7.11191 7.32287 7.47886 7.86094 7.91414 7.94673 8.58158 9.01514 9.67625 10.54163 11.37108 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021990 B = 0.001957 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.983092 B =14303.782987 C =14697.664342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.129 3.871 11 C 0.124 3.876 12 C -0.094 4.094 13 C 0.082 3.918 14 O -0.575 6.575 15 N -0.718 5.718 16 C 0.514 3.486 17 O -0.533 6.533 18 C -0.126 4.126 19 C -0.122 4.122 20 C -0.158 4.158 21 C -0.063 4.063 22 C -0.071 4.071 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.115 4.115 28 C 0.166 3.834 29 H 0.254 0.746 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.034 0.966 36 H 0.372 0.628 37 H 0.396 0.604 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.030 0.970 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.969 -24.151 0.442 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.332 5.332 10 C 0.002 3.998 11 C 0.037 3.963 12 C -0.133 4.133 13 C 0.005 3.995 14 O -0.379 6.379 15 N -0.370 5.370 16 C 0.300 3.700 17 O -0.409 6.409 18 C -0.165 4.165 19 C -0.140 4.140 20 C -0.176 4.176 21 C -0.100 4.100 22 C -0.071 4.071 23 C -0.136 4.136 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.133 4.133 28 C 0.040 3.960 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.217 0.783 37 H 0.230 0.770 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.048 0.952 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.501 -23.859 0.757 25.693 hybrid contribution -0.578 0.858 -0.455 1.130 sum -10.079 -23.002 0.302 25.115 Atomic orbital electron populations 1.69770 1.05009 1.25533 1.56740 1.24766 0.95718 0.97535 1.02326 0.86170 0.78485 0.82955 0.77992 1.21198 1.21560 1.20985 1.18958 0.90290 0.81579 1.43845 0.90071 1.45716 1.01858 0.99550 1.86044 1.22772 0.94611 0.85512 0.96865 1.22919 0.95717 0.84576 0.93049 1.21311 0.95602 1.04001 0.92377 1.22139 0.98251 0.98865 0.80258 1.86499 1.33300 1.97073 1.21026 1.46228 1.28391 1.06111 1.56254 1.20412 0.86053 0.84205 0.79375 1.90695 1.21540 1.86402 1.42248 1.20963 0.99969 0.92293 1.03310 1.22380 0.99996 0.93228 0.98398 1.22556 0.94972 1.00026 1.00094 1.19881 0.93198 0.94708 1.02202 1.19819 0.97671 0.95606 0.93994 1.21096 0.99814 0.93079 0.99646 1.21146 0.98649 0.97586 0.96374 1.21141 1.00527 0.98875 0.94094 1.21158 0.99477 0.93472 0.99581 1.21078 0.98609 0.97937 0.95688 1.22590 0.89032 0.87496 0.96880 0.93570 0.93084 0.94733 0.91054 0.89170 0.93073 0.94779 0.78269 0.77022 0.88317 0.88069 0.86460 0.86970 0.89719 0.90136 0.86069 0.86210 0.86312 0.86150 0.86025 0.95217 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 11.39 55.49 0.63 -26.03 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.61 -15.44 3.54 -177.49 -0.63 -16.07 16 10 C 0.13 2.83 7.52 -2.97 -0.02 2.81 16 11 C 0.12 2.32 0.66 -134.02 -0.09 2.23 16 12 C -0.09 -1.82 4.88 -26.73 -0.13 -1.95 16 13 C 0.08 1.34 6.82 37.16 0.25 1.59 16 14 O -0.57 -9.24 13.66 -35.23 -0.48 -9.72 16 15 N -0.72 -10.35 4.87 -49.06 -0.24 -10.59 16 16 C 0.51 7.41 7.48 -10.99 -0.08 7.33 16 17 O -0.53 -9.87 14.39 5.56 0.08 -9.79 16 18 C -0.13 -1.25 5.81 -29.04 -0.17 -1.42 16 19 C -0.12 -1.30 8.75 -36.02 -0.32 -1.61 16 20 C -0.16 -1.50 9.49 -36.02 -0.34 -1.85 16 21 C -0.06 -0.52 5.43 -29.03 -0.16 -0.67 16 22 C -0.07 -0.60 5.12 -104.63 -0.54 -1.13 16 23 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 24 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 25 C -0.13 -0.93 10.05 -39.59 -0.40 -1.33 16 26 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 27 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 28 C 0.17 3.69 6.62 -2.83 -0.02 3.67 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.43 7.01 -51.93 -0.36 1.07 16 33 H 0.09 2.03 8.02 -51.93 -0.42 1.61 16 34 H 0.05 0.85 6.99 -51.92 -0.36 0.49 16 35 H 0.03 0.48 7.96 -51.93 -0.41 0.07 16 36 H 0.37 3.95 9.12 45.56 0.42 4.37 16 37 H 0.40 4.51 8.71 -40.82 -0.36 4.15 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.81 5.27 -51.93 -0.27 0.54 16 40 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.08 0.62 5.24 -51.93 -0.27 0.34 16 43 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 46 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.08 1.99 6.11 -51.93 -0.32 1.67 16 LS Contribution 410.63 15.07 6.19 6.19 Total: -1.00 -34.38 410.63 -10.27 -44.65 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.97 Total: 8.40 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -3.83 Total: -4.15 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.24 Total: -52.69 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.40 Total: -19.51 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.38 -10.27 -44.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570760274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.095 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds