Wall clock time and date at job start Wed Apr 1 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00256 * 2 1 4 4 H 1.48508 * 109.47057 * 239.99664 * 3 2 1 5 5 H 1.48498 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47694 * 119.99716 * 3 2 1 7 7 C 1.38821 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00065 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99553 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49079 * 179.97438 * 9 7 2 11 11 C 1.53942 * 86.11777 * 155.36016 * 10 9 7 12 12 C 1.52999 * 113.74456 * 269.15357 * 11 10 9 13 13 C 1.53001 * 109.47163 * 167.11587 * 12 11 10 14 14 O 1.42895 * 109.47230 * 184.71239 * 13 12 11 15 15 N 1.46510 * 113.74002 * 137.95410 * 11 10 9 16 16 C 1.34772 * 120.00074 * 66.09084 * 15 11 10 17 17 O 1.21281 * 120.00016 * 355.57514 * 16 15 11 18 18 C 1.50692 * 120.00092 * 175.58007 * 16 15 11 19 19 C 1.50699 * 109.47304 * 179.97438 * 18 16 15 20 20 C 1.30993 * 120.00274 * 125.66921 * 19 18 16 21 21 C 1.50707 * 120.00173 * 7.96728 * 20 19 18 22 22 C 1.50696 * 109.47432 * 127.36520 * 21 20 19 23 23 C 1.38235 * 120.00006 * 89.99978 * 22 21 20 24 24 C 1.38237 * 119.99618 * 180.27839 * 23 22 21 25 25 C 1.38229 * 120.00328 * 359.49205 * 24 23 22 26 26 C 1.38235 * 119.99859 * 0.50796 * 25 24 23 27 27 C 1.38235 * 119.99776 * 270.02668 * 22 21 20 28 28 C 1.47810 * 134.45976 * 359.87206 * 9 7 2 29 29 H 0.97000 * 119.99751 * 0.02562 * 1 2 3 30 30 H 1.09003 * 113.77072 * 41.06275 * 10 9 7 31 31 H 1.09000 * 113.87290 * 269.67589 * 10 9 7 32 32 H 1.08997 * 109.47444 * 287.11542 * 12 11 10 33 33 H 1.09002 * 109.46743 * 47.11898 * 12 11 10 34 34 H 1.09007 * 109.47082 * 304.70728 * 13 12 11 35 35 H 1.08995 * 109.47365 * 64.71020 * 13 12 11 36 36 H 0.96696 * 114.00127 * 179.97438 * 14 13 12 37 37 H 0.96998 * 119.99822 * 246.08826 * 15 11 10 38 38 H 1.09003 * 109.47289 * 59.99766 * 18 16 15 39 39 H 1.08995 * 109.47158 * 299.99723 * 18 16 15 40 40 H 1.08005 * 119.99962 * 305.66899 * 19 18 16 41 41 H 1.08000 * 120.00530 * 187.96262 * 20 19 18 42 42 H 1.08999 * 109.46506 * 7.36519 * 21 20 19 43 43 H 1.09001 * 109.46743 * 247.36804 * 21 20 19 44 44 H 1.08000 * 119.99722 * 0.02562 * 23 22 21 45 45 H 1.08005 * 119.99458 * 179.72512 * 24 23 22 46 46 H 1.07998 * 120.00187 * 180.23632 * 25 24 23 47 47 H 1.08004 * 119.99985 * 179.72789 * 26 25 24 48 48 H 1.07996 * 120.00457 * 359.97438 * 27 22 21 49 49 H 1.08998 * 113.77504 * 90.37620 * 28 9 7 50 50 H 1.09002 * 113.83923 * 318.90971 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7200 -3.8102 0.0005 11 6 0.3469 -4.0829 0.6409 12 6 0.3643 -4.0562 2.1705 13 6 -1.0720 -4.0153 2.6962 14 8 -1.0549 -3.8798 4.1186 15 7 -0.3334 -5.2614 0.0979 16 6 0.1845 -6.4897 0.2965 17 8 1.2541 -6.6138 0.8546 18 6 -0.5653 -7.7088 -0.1749 19 6 0.2236 -8.9468 0.1658 20 6 -0.3350 -9.9105 0.8551 21 6 -1.8116 -9.8656 1.1534 22 6 -2.4509 -11.1601 0.7218 23 6 -2.5391 -12.2168 1.6086 24 6 -3.1204 -13.4063 1.2108 25 6 -3.6229 -13.5355 -0.0704 26 6 -3.5347 -12.4788 -0.9573 27 6 -2.9486 -11.2911 -0.5612 28 6 -0.1058 -2.7570 0.0024 29 1 -0.4850 0.8401 -0.0004 30 1 2.5623 -4.0325 0.6558 31 1 1.8325 -4.2367 -0.9962 32 1 0.8625 -4.9509 2.5439 33 1 0.9017 -3.1716 2.5124 34 1 -1.5957 -3.1663 2.2567 35 1 -1.5845 -4.9383 2.4253 36 1 -1.9335 -3.8467 4.5211 37 1 -1.1567 -5.1576 -0.4045 38 1 -0.7063 -7.6539 -1.2544 39 1 -1.5372 -7.7503 0.3168 40 1 1.2497 -9.0394 -0.1584 41 1 0.2625 -10.7373 1.2097 42 1 -2.2667 -9.0370 0.6108 43 1 -1.9619 -9.7252 2.2238 44 1 -2.1502 -12.1144 2.6109 45 1 -3.1853 -14.2334 1.9024 46 1 -4.0805 -14.4635 -0.3799 47 1 -3.9234 -12.5813 -1.9597 48 1 -2.8797 -10.4656 -1.2541 49 1 -0.5312 -2.8722 -0.9945 50 1 -0.7190 -2.1399 0.6592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570760274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:39 Heat of formation + Delta-G solvation = -13.362373 kcal Electronic energy + Delta-G solvation = -29424.096289 eV Core-core repulsion = 25417.407462 eV Total energy + Delta-G solvation = -4006.688826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.45251 -40.17940 -39.42509 -37.68235 -36.76175 -35.21914 -33.79890 -32.87656 -31.88399 -31.69169 -29.52890 -28.77099 -26.86319 -26.84610 -24.98106 -23.40701 -23.33588 -22.34345 -21.89813 -20.12240 -19.27321 -18.77823 -18.39872 -18.20966 -17.55080 -17.14005 -16.82048 -16.59648 -16.11808 -15.98851 -15.88883 -15.57275 -15.37443 -15.04222 -14.75533 -14.66326 -14.34423 -14.21892 -13.95236 -13.61751 -13.45268 -13.34722 -13.26189 -12.97644 -12.85691 -12.80759 -12.64183 -12.59111 -12.25591 -12.08955 -11.90934 -11.85644 -11.72420 -11.59400 -11.36866 -10.97060 -10.87054 -10.60691 -10.02413 -9.84219 -9.74777 -9.51941 -8.96034 -7.93422 -5.26146 0.49823 0.57200 1.28223 1.45445 1.48473 1.54278 1.79604 2.28550 2.52481 2.95456 3.15889 3.26610 3.39975 3.63795 3.82369 3.98401 4.00239 4.10004 4.14498 4.22951 4.25756 4.33855 4.35041 4.36692 4.43384 4.50090 4.56467 4.68682 4.72355 4.72699 4.75200 4.85366 4.86083 4.93593 5.05083 5.13382 5.14060 5.19196 5.20946 5.23572 5.25089 5.47857 5.64227 5.69891 5.72432 5.75937 5.79085 5.90010 5.93214 6.20885 6.73413 6.90366 6.92955 7.43819 7.56395 8.50080 9.23193 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021990 B = 0.001957 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.983092 B =14303.782987 C =14697.664342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.058 4.058 3 Si 0.977 3.023 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.077 0.923 9 N -0.633 5.633 10 C 0.125 3.875 11 C 0.157 3.843 12 C -0.089 4.089 13 C 0.092 3.908 14 O -0.594 6.594 15 N -0.707 5.707 16 C 0.513 3.487 17 O -0.576 6.576 18 C -0.111 4.111 19 C -0.143 4.143 20 C -0.146 4.146 21 C -0.060 4.060 22 C -0.083 4.083 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.137 4.137 26 C -0.129 4.129 27 C -0.127 4.127 28 C 0.172 3.828 29 H 0.252 0.748 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.416 0.584 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.128 0.872 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.133 0.867 49 H 0.036 0.964 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.783 -25.572 0.026 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.805 3.195 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.360 5.360 10 C -0.001 4.001 11 C 0.069 3.931 12 C -0.127 4.127 13 C 0.015 3.985 14 O -0.402 6.402 15 N -0.361 5.361 16 C 0.301 3.699 17 O -0.455 6.455 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.097 4.097 22 C -0.083 4.083 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.155 4.155 26 C -0.147 4.147 27 C -0.145 4.145 28 C 0.046 3.954 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.246 0.754 37 H 0.253 0.747 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.146 0.854 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.151 0.849 49 H 0.053 0.947 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.359 -25.320 0.330 27.753 hybrid contribution 0.010 1.170 -0.293 1.206 sum -11.349 -24.149 0.037 26.683 Atomic orbital electron populations 1.69920 1.06043 1.25904 1.57519 1.25539 0.96695 1.00459 1.02447 0.85179 0.77294 0.78923 0.78072 1.20468 1.21448 1.20647 1.19257 0.90623 0.83102 1.43728 0.90524 1.46011 1.03566 1.00142 1.86277 1.22853 0.96080 0.84076 0.97065 1.22127 0.93432 0.85042 0.92516 1.21175 0.97485 1.01429 0.92661 1.21974 0.95837 1.00194 0.80528 1.86437 1.35837 1.97147 1.20801 1.45981 1.28855 1.04895 1.56339 1.21233 0.85587 0.84930 0.78151 1.90693 1.23717 1.86962 1.44158 1.20935 0.99943 0.88996 1.05112 1.22332 0.99642 0.94237 0.99900 1.22676 0.95892 0.99378 0.98480 1.19885 0.91964 0.95187 1.02637 1.19905 0.98250 0.95779 0.94379 1.21312 1.00141 0.93420 1.00148 1.21420 0.98431 0.97956 0.96934 1.21449 1.00309 0.99642 0.94064 1.21446 0.99343 0.93411 1.00477 1.21313 0.98673 0.98636 0.95841 1.22485 0.87268 0.88775 0.96843 0.93941 0.94649 0.94174 0.91961 0.93333 0.93567 0.91573 0.75376 0.74680 0.85610 0.85316 0.88198 0.87216 0.88430 0.89749 0.85385 0.84695 0.84600 0.84571 0.84864 0.94675 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.34 11.39 21.65 0.25 -55.09 16 2 C -0.06 -3.28 5.50 84.87 0.47 -2.81 16 3 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.24 -13.72 10.70 84.04 0.90 -12.82 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.63 -33.13 3.54 -715.46 -2.54 -35.67 16 10 C 0.13 5.62 7.52 86.48 0.65 6.27 16 11 C 0.16 5.87 0.66 5.36 0.00 5.87 16 12 C -0.09 -3.45 4.88 30.59 0.15 -3.30 16 13 C 0.09 2.87 6.82 71.98 0.49 3.36 16 14 O -0.59 -18.31 13.66 -148.98 -2.03 -20.35 16 15 N -0.71 -19.05 4.87 -427.53 -2.08 -21.13 16 16 C 0.51 13.86 7.48 87.66 0.66 14.51 16 17 O -0.58 -21.16 14.39 -3.03 -0.04 -21.21 16 18 C -0.11 -1.86 5.81 29.10 0.17 -1.69 16 19 C -0.14 -2.81 8.75 25.65 0.22 -2.58 16 20 C -0.15 -2.52 9.49 25.66 0.24 -2.28 16 21 C -0.06 -0.83 5.43 29.10 0.16 -0.67 16 22 C -0.08 -1.23 5.12 -19.87 -0.10 -1.33 16 23 C -0.13 -1.92 9.70 22.27 0.22 -1.71 16 24 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 25 C -0.14 -1.72 10.05 22.27 0.22 -1.50 16 26 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 27 C -0.13 -1.76 9.70 22.27 0.22 -1.55 16 28 C 0.17 7.71 6.62 86.45 0.57 8.28 16 29 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 31 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 2.53 7.01 -2.39 -0.02 2.52 16 33 H 0.05 2.28 8.02 -2.39 -0.02 2.26 16 34 H 0.05 1.49 6.99 -2.38 -0.02 1.48 16 35 H 0.07 1.65 7.96 -2.39 -0.02 1.63 16 36 H 0.40 7.57 9.12 -74.06 -0.68 6.90 16 37 H 0.42 8.18 8.71 -92.71 -0.81 7.37 16 38 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.13 1.49 5.27 -2.39 -0.01 1.48 16 40 H 0.10 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.11 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.10 1.05 5.24 -2.39 -0.01 1.04 16 43 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 44 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 46 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 47 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 48 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 49 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.06 2.96 6.11 -2.39 -0.01 2.95 16 Total: -1.00 -76.42 410.63 0.73 -75.69 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.53 Total: 26.62 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 5.69 Total: 3.12 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -4.37 Total: -111.89 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -2.08 Total: -41.55 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -76.42 0.73 -75.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570760274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.323 kcal (2) G-P(sol) polarization free energy of solvation -76.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds