Wall clock time and date at job start Wed Apr 1 2020 03:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00160 * 2 1 4 4 H 1.48499 * 109.47051 * 269.99754 * 3 2 1 5 5 H 1.48500 * 109.47235 * 30.00060 * 3 2 1 6 6 H 1.48505 * 109.46937 * 150.00239 * 3 2 1 7 7 C 1.38809 * 119.99544 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00524 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99911 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00025 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47052 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47100 * 59.99910 * 10 9 7 13 13 C 1.53000 * 109.47193 * 65.00290 * 12 10 9 14 14 N 1.46493 * 109.47216 * 179.97438 * 13 12 10 15 15 C 1.34776 * 120.00205 * 179.97438 * 14 13 12 16 16 O 1.21738 * 119.99963 * 0.02562 * 15 14 13 17 17 C 1.41800 * 120.00009 * 179.97438 * 15 14 13 18 18 C 1.33454 * 118.78510 * 180.02562 * 17 15 14 19 19 O 1.34351 * 123.08271 * 180.41955 * 18 17 15 20 20 C 1.45346 * 117.47838 * 343.66485 * 19 18 17 21 21 C 1.53482 * 108.27719 * 47.46461 * 20 19 18 22 22 C 1.50410 * 118.78858 * 359.97438 * 17 15 14 23 23 C 1.52999 * 109.47048 * 299.99952 * 10 9 7 24 24 C 1.50699 * 109.47186 * 295.00289 * 23 10 9 25 25 C 1.38234 * 120.00039 * 269.73081 * 24 23 10 26 26 C 1.38238 * 120.00271 * 179.76860 * 25 24 23 27 27 C 1.38233 * 119.99940 * 0.49985 * 26 25 24 28 28 C 1.38242 * 119.99577 * 359.74907 * 27 26 25 29 29 C 1.38232 * 120.00181 * 0.02562 * 28 27 26 30 30 H 0.97006 * 119.99498 * 359.97438 * 1 2 3 31 31 H 0.96995 * 119.99834 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47354 * 304.99821 * 12 10 9 33 33 H 1.09000 * 109.46977 * 184.99868 * 12 10 9 34 34 H 1.08997 * 109.47353 * 59.99531 * 13 12 10 35 35 H 1.09000 * 109.46814 * 299.99677 * 13 12 10 36 36 H 0.97008 * 119.99999 * 359.97438 * 14 13 12 37 37 H 1.08007 * 118.46326 * 0.12775 * 18 17 15 38 38 H 1.09004 * 109.69029 * 287.77233 * 20 19 18 39 39 H 1.08998 * 109.74544 * 167.18541 * 20 19 18 40 40 H 1.09005 * 109.70428 * 177.62082 * 21 20 19 41 41 H 1.09000 * 109.70556 * 57.00324 * 21 20 19 42 42 H 1.09002 * 109.45549 * 282.35529 * 22 17 15 43 43 H 1.08993 * 109.45907 * 42.31781 * 22 17 15 44 44 H 1.09000 * 109.47362 * 54.99808 * 23 10 9 45 45 H 1.08997 * 109.47453 * 175.00167 * 23 10 9 46 46 H 1.08003 * 120.00131 * 359.97438 * 25 24 23 47 47 H 1.07999 * 119.99710 * 180.22727 * 26 25 24 48 48 H 1.07993 * 120.00412 * 179.72813 * 27 26 25 49 49 H 1.08000 * 119.99773 * 179.97438 * 28 27 26 50 50 H 1.08005 * 119.99631 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4711 0.0000 11 1 5.1836 -2.2719 0.0000 12 6 3.7418 -3.2736 -1.2489 13 6 4.2234 -2.5284 -2.4953 14 7 3.8695 -3.2971 -3.6911 15 6 4.1956 -2.8309 -4.9129 16 8 4.7846 -1.7712 -5.0228 17 6 3.8535 -3.5753 -6.0703 18 6 4.1885 -3.0912 -7.2680 19 8 3.9003 -3.7199 -8.4198 20 6 3.5291 -5.1230 -8.3434 21 6 2.4818 -5.2840 -7.2330 22 6 3.1274 -4.8819 -5.9028 23 6 3.7428 -3.2730 1.2496 24 6 4.2180 -2.5383 2.4766 25 6 5.4813 -2.7819 2.9821 26 6 5.9190 -2.1045 4.1048 27 6 5.0895 -1.1911 4.7281 28 6 3.8242 -0.9513 4.2255 29 6 3.3883 -1.6253 3.1001 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3623 -0.0011 32 1 2.6598 -3.3965 -1.2944 33 1 4.2173 -4.2535 -1.2052 34 1 5.3054 -2.4055 -2.4499 35 1 3.7480 -1.5485 -2.5390 36 1 3.4004 -4.1417 -3.6035 37 1 4.7120 -2.1476 -7.3137 38 1 4.4082 -5.7233 -8.1093 39 1 3.1074 -5.4448 -9.2957 40 1 2.1552 -6.3228 -7.1837 41 1 1.6274 -4.6388 -7.4373 42 1 3.8335 -5.6526 -5.5939 43 1 2.3538 -4.7725 -5.1428 44 1 2.6608 -3.3958 1.2960 45 1 4.2182 -4.2529 1.2060 46 1 6.1277 -3.4990 2.4980 47 1 6.9074 -2.2922 4.4975 48 1 5.4297 -0.6651 5.6077 49 1 3.1759 -0.2380 4.7127 50 1 2.3996 -1.4382 2.7078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571527505.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:49 Heat of formation + Delta-G solvation = -32.569774 kcal Electronic energy + Delta-G solvation = -29769.941097 eV Core-core repulsion = 25762.419375 eV Total energy + Delta-G solvation = -4007.521722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.67017 -39.09739 -38.84197 -36.68301 -34.66883 -34.09830 -32.44173 -31.83344 -31.05860 -30.37884 -29.61027 -27.25234 -25.99446 -24.67243 -23.82179 -22.69627 -22.04229 -21.20638 -20.72737 -19.49058 -18.82382 -18.07151 -17.72248 -16.54333 -16.22677 -15.93783 -15.47174 -15.23103 -14.93141 -14.74549 -14.62171 -14.36083 -14.24908 -14.13214 -13.58574 -13.30311 -13.25059 -13.01455 -12.91904 -12.77785 -12.71101 -12.46285 -11.75243 -11.63343 -11.58676 -11.53177 -11.23325 -11.03155 -10.94027 -10.91720 -10.80804 -10.47449 -10.37447 -10.20666 -9.96480 -9.66455 -9.47187 -8.94568 -8.80932 -8.49042 -8.42899 -8.15275 -7.25556 -5.77473 -3.12190 1.37523 1.83869 1.92053 2.97410 3.41859 3.45900 3.50667 3.52570 3.66640 4.29101 4.35311 4.42381 4.59700 4.61503 4.87451 4.97524 5.12873 5.20058 5.23571 5.27841 5.32749 5.33918 5.40294 5.46204 5.54743 5.56709 5.65569 5.75184 5.76854 5.85962 5.93014 5.96410 6.01949 6.07333 6.09426 6.19414 6.29513 6.34484 6.48646 6.61355 6.67277 6.74249 6.83565 6.88681 6.92072 7.04755 7.06551 7.30344 7.55834 7.83096 7.96758 8.41392 8.53699 9.20265 9.94126 10.13624 11.40277 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.002621 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.345546 B =10679.881358 C =11859.591086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.010 3.990 3 Si 0.874 3.126 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.236 4.236 8 H 0.091 0.909 9 N -0.742 5.742 10 C 0.193 3.807 11 H 0.056 0.944 12 C -0.139 4.139 13 C 0.127 3.873 14 N -0.723 5.723 15 C 0.566 3.434 16 O -0.563 6.563 17 C -0.311 4.311 18 C 0.152 3.848 19 O -0.313 6.313 20 C 0.052 3.948 21 C -0.157 4.157 22 C -0.074 4.074 23 C -0.094 4.094 24 C -0.057 4.057 25 C -0.130 4.130 26 C -0.132 4.132 27 C -0.137 4.137 28 C -0.127 4.127 29 C -0.087 4.087 30 H 0.258 0.742 31 H 0.363 0.637 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.395 0.605 37 H 0.180 0.820 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.114 0.886 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.061 -13.749 -7.237 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.186 4.186 3 Si 0.704 3.296 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.384 5.384 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.179 4.179 13 C 0.004 3.996 14 N -0.374 5.374 15 C 0.357 3.643 16 O -0.445 6.445 17 C -0.316 4.316 18 C 0.084 3.916 19 O -0.224 6.224 20 C -0.022 4.022 21 C -0.195 4.195 22 C -0.112 4.112 23 C -0.133 4.133 24 C -0.057 4.057 25 C -0.148 4.148 26 C -0.150 4.150 27 C -0.155 4.155 28 C -0.145 4.145 29 C -0.104 4.104 30 H 0.068 0.932 31 H 0.195 0.805 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.230 0.770 37 H 0.197 0.803 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.132 0.868 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.220 -12.987 -7.500 17.605 hybrid contribution 0.203 0.805 0.383 0.915 sum 9.423 -12.182 -7.117 16.966 Atomic orbital electron populations 1.69692 1.05089 1.25731 1.57511 1.24586 0.95033 0.96917 1.02014 0.86706 0.79483 0.85477 0.77895 1.21161 1.22032 1.20066 1.18881 0.80580 0.94300 1.42777 0.89105 1.42763 1.04116 1.01818 1.89669 1.20010 0.94501 0.86817 0.90499 0.92563 1.22233 1.02778 0.97756 0.95116 1.21315 0.99205 0.96505 0.82554 1.45984 1.59891 1.25245 1.06259 1.16555 0.79139 0.85129 0.83499 1.90805 1.43204 1.23387 1.87098 1.20103 1.14233 1.02833 0.94436 1.22967 0.89325 0.95463 0.83809 1.86269 1.80774 1.25572 1.29740 1.23536 0.98354 0.79507 1.00769 1.22196 0.98839 1.03332 0.95111 1.20280 0.99070 0.93920 0.97894 1.21132 1.02428 0.96665 0.93088 1.19837 0.93436 0.96667 0.95800 1.20993 0.96067 1.00728 0.96981 1.20945 0.99189 0.97992 0.96916 1.20996 0.94830 0.99365 1.00287 1.21186 0.96105 1.00003 0.97209 1.21405 1.01162 0.94254 0.93624 0.93178 0.80459 0.90369 0.92925 0.92778 0.90012 0.77019 0.80337 0.90942 0.87466 0.89525 0.90182 0.90780 0.89964 0.90106 0.92463 0.86926 0.87123 0.87172 0.86803 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.97 55.49 0.78 -27.25 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 3 Si 0.87 21.94 27.73 -169.99 -4.71 17.23 16 4 H -0.28 -7.37 7.11 56.52 0.40 -6.96 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.59 6.52 56.52 0.37 -6.22 16 7 C -0.24 -5.92 8.36 -15.06 -0.13 -6.04 16 8 H 0.09 2.44 6.87 -52.48 -0.36 2.08 16 9 N -0.74 -15.84 3.94 -53.42 -0.21 -16.05 16 10 C 0.19 3.30 2.67 -67.93 -0.18 3.12 16 11 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 12 C -0.14 -2.15 4.73 -26.73 -0.13 -2.27 16 13 C 0.13 2.14 5.56 -4.05 -0.02 2.11 16 14 N -0.72 -10.66 5.47 -63.18 -0.35 -11.00 16 15 C 0.57 9.09 7.53 -14.90 -0.11 8.98 16 16 O -0.56 -11.22 15.92 5.15 0.08 -11.14 16 17 C -0.31 -3.87 5.70 -105.08 -0.60 -4.47 16 18 C 0.15 1.79 10.46 29.06 0.30 2.10 16 19 O -0.31 -3.22 10.48 -14.89 -0.16 -3.38 16 20 C 0.05 0.36 7.15 37.41 0.27 0.63 16 21 C -0.16 -1.11 6.23 -26.36 -0.16 -1.28 16 22 C -0.07 -0.67 5.09 -27.91 -0.14 -0.81 16 23 C -0.09 -1.52 4.75 -27.88 -0.13 -1.65 16 24 C -0.06 -0.97 4.95 -104.63 -0.52 -1.49 16 25 C -0.13 -1.94 9.70 -39.58 -0.38 -2.32 16 26 C -0.13 -1.89 10.05 -39.58 -0.40 -2.28 16 27 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 28 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 29 C -0.09 -1.60 9.31 -39.59 -0.37 -1.97 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.36 8.14 5.89 -40.82 -0.24 7.90 16 32 H 0.08 1.36 7.11 -51.93 -0.37 0.99 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.70 7.75 -51.93 -0.40 1.30 16 36 H 0.40 4.70 6.58 -40.82 -0.27 4.43 16 37 H 0.18 2.17 7.21 -52.48 -0.38 1.79 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.75 7.15 -51.93 -0.37 0.38 16 44 H 0.08 1.47 7.05 -51.93 -0.37 1.10 16 45 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 46 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 47 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 48 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 49 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 50 H 0.14 2.91 7.37 -52.48 -0.39 2.52 16 LS Contribution 402.82 15.07 6.07 6.07 Total: -1.00 -32.52 402.82 -9.90 -42.42 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -7.81 Total: 15.51 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -3.59 Total: -12.41 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.22 Total: -54.31 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.07 Total: -14.52 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.52 -9.90 -42.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571527505.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.851 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds