Wall clock time and date at job start Wed Apr 1 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00306 * 2 1 4 4 H 1.48499 * 109.47004 * 270.00287 * 3 2 1 5 5 H 1.48497 * 109.46733 * 30.00097 * 3 2 1 6 6 H 1.48498 * 109.46774 * 150.00220 * 3 2 1 7 7 C 1.37878 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00470 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99994 * 169.99985 * 10 9 7 12 12 C 1.53237 * 109.36523 * 187.23964 * 11 10 9 13 13 N 1.47089 * 108.51490 * 306.21161 * 12 11 10 14 14 C 1.34777 * 120.85668 * 231.12074 * 13 12 11 15 15 O 1.21285 * 120.00105 * 356.23385 * 14 13 12 16 16 C 1.50703 * 120.00003 * 176.23343 * 14 13 12 17 17 C 1.50697 * 109.87369 * 285.51490 * 16 14 13 18 18 C 1.38234 * 119.99518 * 307.40441 * 17 16 14 19 19 C 1.38241 * 119.99837 * 179.80729 * 18 17 16 20 20 C 1.38235 * 119.99702 * 0.42082 * 19 18 17 21 21 C 1.38236 * 120.00283 * 359.81171 * 20 19 18 22 22 C 1.38227 * 120.00253 * 127.67295 * 17 16 14 23 23 C 1.54099 * 109.88005 * 164.34748 * 16 14 13 24 24 C 1.54806 * 104.19114 * 242.60923 * 23 16 14 25 25 C 1.55004 * 102.09353 * 20.88031 * 24 23 16 26 26 O 1.43748 * 109.87519 * 46.52095 * 16 14 13 27 27 C 1.47075 * 118.26295 * 51.13668 * 13 12 11 28 28 C 1.46900 * 110.99594 * 294.29827 * 10 9 7 29 29 H 0.96998 * 119.99800 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47108 * 59.99999 * 9 7 2 31 31 H 1.08999 * 109.46669 * 299.99467 * 9 7 2 32 32 H 1.09005 * 109.49188 * 307.21292 * 11 10 9 33 33 H 1.09002 * 109.49235 * 67.26059 * 11 10 9 34 34 H 1.08999 * 109.63092 * 65.88592 * 12 11 10 35 35 H 1.08995 * 109.63252 * 186.47255 * 12 11 10 36 36 H 1.08000 * 120.00176 * 359.97438 * 18 17 16 37 37 H 1.07997 * 120.00288 * 180.20628 * 19 18 17 38 38 H 1.08002 * 119.99599 * 179.78857 * 20 19 18 39 39 H 1.07999 * 119.99786 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00484 * 359.97438 * 22 17 16 41 41 H 1.09004 * 110.48561 * 1.28743 * 23 16 14 42 42 H 1.09001 * 110.48614 * 123.92773 * 23 16 14 43 43 H 1.09004 * 110.90738 * 262.68224 * 24 23 16 44 44 H 1.08998 * 110.94347 * 139.08937 * 24 23 16 45 45 H 1.08995 * 110.61904 * 204.47578 * 25 24 23 46 46 H 1.08993 * 110.61517 * 81.47799 * 25 24 23 47 47 H 1.08995 * 109.63595 * 189.12625 * 27 13 12 48 48 H 1.09000 * 109.62705 * 68.54531 * 27 13 12 49 49 H 1.08998 * 109.49631 * 292.70570 * 28 10 9 50 50 H 1.08994 * 109.49436 * 52.76676 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 1.5209 -4.8937 0.2356 12 6 2.5628 -6.0039 0.4084 13 7 3.4619 -5.9860 -0.7555 14 6 3.7133 -7.1120 -1.4522 15 8 3.2505 -8.1702 -1.0821 16 6 4.5694 -7.0562 -2.6912 17 6 3.7899 -6.4421 -3.8253 18 6 2.5465 -6.9444 -4.1610 19 6 1.8297 -6.3785 -5.1987 20 6 2.3600 -5.3160 -5.9064 21 6 3.6054 -4.8168 -5.5738 22 6 4.3205 -5.3802 -4.5335 23 6 5.0287 -8.4761 -3.0752 24 6 6.5710 -8.4220 -2.9538 25 6 6.7806 -7.2036 -2.0189 26 8 5.7515 -6.2798 -2.4338 27 6 4.0796 -4.7075 -1.1387 28 6 2.9775 -3.6486 -1.2509 29 1 -0.4850 0.8400 0.0004 30 1 0.6246 -2.5564 -0.8919 31 1 0.6240 -2.5575 0.8881 32 1 0.9150 -4.8196 1.1387 33 1 0.8795 -5.1258 -0.6146 34 1 3.1379 -5.8281 1.3175 35 1 2.0618 -6.9700 0.4698 36 1 2.1340 -7.7771 -3.6107 37 1 0.8568 -6.7688 -5.4589 38 1 1.8014 -4.8762 -6.7193 39 1 4.0198 -3.9870 -6.1270 40 1 5.2936 -4.9903 -4.2738 41 1 4.6170 -9.2105 -2.3829 42 1 4.7344 -8.7085 -4.0987 43 1 7.0320 -8.2498 -3.9265 44 1 6.9581 -9.3332 -2.4978 45 1 7.7691 -6.7699 -2.1694 46 1 6.6410 -7.4909 -0.9769 47 1 4.5815 -4.8167 -2.1001 48 1 4.8004 -4.4066 -0.3784 49 1 2.3162 -3.8984 -2.0806 50 1 3.4277 -2.6716 -1.4260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650063164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:14 Heat of formation + Delta-G solvation = -31.574282 kcal Electronic energy + Delta-G solvation = -32163.050351 eV Core-core repulsion = 28155.571797 eV Total energy + Delta-G solvation = -4007.478554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30324 -38.96383 -38.46035 -37.38523 -34.42986 -32.67305 -32.53143 -32.02075 -30.89179 -30.61875 -28.57264 -27.96185 -25.67897 -24.05072 -23.29097 -22.81654 -22.27611 -21.78931 -21.31718 -20.14703 -18.73067 -17.67646 -17.06401 -16.66288 -16.34879 -15.98510 -15.60492 -14.94580 -14.83841 -14.76794 -14.59365 -14.35385 -13.94327 -13.86680 -13.74572 -13.50522 -13.36876 -13.34101 -12.94457 -12.59220 -12.31513 -12.08808 -11.96817 -11.79134 -11.58344 -11.42366 -11.21555 -11.07351 -11.03195 -10.91094 -10.81373 -10.71858 -10.67373 -10.52827 -10.46259 -9.85869 -9.47867 -9.24865 -8.94142 -8.69057 -8.48361 -8.38877 -7.27909 -6.04256 -4.05892 1.22985 1.37411 2.57214 3.09776 3.30514 3.36993 3.40903 3.41179 3.74141 4.26641 4.40437 4.44378 4.47795 4.70879 4.78180 4.89821 4.95369 4.97503 5.08868 5.15848 5.31277 5.36592 5.42681 5.43461 5.46854 5.49322 5.56837 5.58882 5.65912 5.71661 5.76121 5.82490 5.87183 5.90219 5.97342 6.01976 6.13639 6.31159 6.34458 6.42918 6.49137 6.54057 6.56571 6.62014 6.76203 6.92764 7.25516 7.31773 7.57470 7.77191 8.04782 8.15618 8.19845 8.50906 9.01335 9.58432 11.06663 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012185 B = 0.003632 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.418589 B = 7708.231549 C = 8315.958533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.042 3.958 12 C 0.115 3.885 13 N -0.588 5.588 14 C 0.510 3.490 15 O -0.548 6.548 16 C 0.137 3.863 17 C -0.083 4.083 18 C -0.107 4.107 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.092 4.092 23 C -0.136 4.136 24 C -0.151 4.151 25 C 0.040 3.960 26 O -0.350 6.350 27 C 0.108 3.892 28 C 0.052 3.948 29 H 0.261 0.739 30 H -0.010 1.010 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.072 0.928 49 H 0.023 0.977 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.277 -16.209 -10.025 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.087 4.087 12 C -0.007 4.007 13 N -0.319 5.319 14 C 0.297 3.703 15 O -0.428 6.428 16 C 0.094 3.906 17 C -0.083 4.083 18 C -0.125 4.125 19 C -0.136 4.136 20 C -0.132 4.132 21 C -0.136 4.136 22 C -0.110 4.110 23 C -0.174 4.174 24 C -0.189 4.189 25 C -0.036 4.036 26 O -0.269 6.269 27 C -0.015 4.015 28 C -0.077 4.077 29 H 0.071 0.929 30 H 0.008 0.992 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.151 0.849 41 H 0.119 0.881 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.118 0.882 46 H 0.081 0.919 47 H 0.120 0.880 48 H 0.090 0.910 49 H 0.041 0.959 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.216 -16.310 -9.436 21.929 hybrid contribution -0.364 0.826 -0.547 1.056 sum 10.852 -15.484 -9.983 21.382 Atomic orbital electron populations 1.69960 1.06092 1.26791 1.50931 1.24985 0.94841 0.99303 0.95405 0.86510 0.79845 0.83123 0.78037 1.20732 1.21270 1.19720 1.21138 0.93457 0.89857 1.50154 0.91824 1.19719 0.90024 0.87240 0.96120 1.62095 1.27878 1.02544 1.33456 1.22381 0.94860 0.90669 1.00810 1.21809 0.91780 0.99428 0.87711 1.48140 1.45535 1.08821 1.29422 1.20674 0.81599 0.83686 0.84387 1.90640 1.53611 1.29236 1.69285 1.20918 0.86192 0.92349 0.91167 1.19350 0.95084 0.97657 0.96215 1.20931 0.93840 1.00171 0.97564 1.21069 0.99705 0.96818 0.95971 1.21213 0.95833 0.96450 0.99735 1.21174 0.95023 0.99826 0.97610 1.20995 1.00420 0.94832 0.94762 1.22966 0.95564 0.94923 1.03922 1.23138 0.95661 0.99256 1.00846 1.23673 0.92344 0.89546 0.98000 1.88956 1.19954 1.30488 1.87475 1.22278 0.95614 0.81682 1.01880 1.22333 0.95178 0.99107 0.91116 0.92917 0.99183 0.95109 0.90106 0.95673 0.90865 0.89581 0.86015 0.85927 0.86005 0.85734 0.84880 0.88120 0.89716 0.90255 0.89891 0.88229 0.91888 0.88007 0.90985 0.95896 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -14.05 8.41 -34.44 -0.29 -14.34 16 8 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 9 C 0.19 5.04 4.72 -4.97 -0.02 5.01 16 10 N -0.53 -11.51 4.62 -235.76 -1.09 -12.60 16 11 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 12 C 0.12 1.89 6.59 -3.60 -0.02 1.87 16 13 N -0.59 -9.59 3.01 -172.46 -0.52 -10.11 16 14 C 0.51 8.00 6.00 -10.98 -0.07 7.93 16 15 O -0.55 -9.61 14.81 5.55 0.08 -9.53 16 16 C 0.14 1.75 0.53 -92.35 -0.05 1.70 16 17 C -0.08 -1.07 3.93 -104.63 -0.41 -1.48 16 18 C -0.11 -1.40 9.00 -39.58 -0.36 -1.76 16 19 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 20 C -0.11 -1.30 10.05 -39.58 -0.40 -1.69 16 21 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 22 C -0.09 -1.12 8.42 -39.59 -0.33 -1.46 16 23 C -0.14 -1.46 6.05 -25.21 -0.15 -1.61 16 24 C -0.15 -1.24 7.15 -24.72 -0.18 -1.42 16 25 C 0.04 0.38 7.66 38.22 0.29 0.67 16 26 O -0.35 -4.19 6.56 -35.23 -0.23 -4.42 16 27 C 0.11 1.75 5.73 -3.60 -0.02 1.73 16 28 C 0.05 1.01 5.46 -3.69 -0.02 0.99 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 31 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 32 H 0.08 1.45 7.99 -51.93 -0.41 1.04 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.38 7.09 -51.93 -0.37 1.01 16 36 H 0.12 1.62 7.86 -52.49 -0.41 1.21 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.13 1.52 6.97 -52.49 -0.37 1.15 16 41 H 0.10 1.21 6.54 -51.93 -0.34 0.87 16 42 H 0.08 0.84 7.63 -51.93 -0.40 0.45 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 1.52 3.36 -51.93 -0.17 1.35 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 1.97 6.67 -51.93 -0.35 1.62 16 LS Contribution 388.93 15.07 5.86 5.86 Total: -1.00 -31.66 388.93 -10.93 -42.60 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.81 Total: 2.82 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.94 Total: -5.15 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.87 Total: -48.55 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.15 Total: -13.95 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.66 -10.93 -42.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650063164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.025 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds