Wall clock time and date at job start Wed Apr 1 2020 03:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00306 * 2 1 4 4 H 1.48499 * 109.47004 * 270.00287 * 3 2 1 5 5 H 1.48497 * 109.46733 * 30.00097 * 3 2 1 6 6 H 1.48498 * 109.46774 * 150.00220 * 3 2 1 7 7 C 1.37878 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00470 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99994 * 169.99985 * 10 9 7 12 12 C 1.53237 * 109.36523 * 187.23964 * 11 10 9 13 13 N 1.47089 * 108.51490 * 306.21161 * 12 11 10 14 14 C 1.34777 * 120.85668 * 231.12074 * 13 12 11 15 15 O 1.21285 * 120.00105 * 356.23385 * 14 13 12 16 16 C 1.50703 * 120.00003 * 176.23343 * 14 13 12 17 17 C 1.50697 * 109.87369 * 285.51490 * 16 14 13 18 18 C 1.38234 * 119.99518 * 307.40441 * 17 16 14 19 19 C 1.38241 * 119.99837 * 179.80729 * 18 17 16 20 20 C 1.38235 * 119.99702 * 0.42082 * 19 18 17 21 21 C 1.38236 * 120.00283 * 359.81171 * 20 19 18 22 22 C 1.38227 * 120.00253 * 127.67295 * 17 16 14 23 23 C 1.54099 * 109.88005 * 164.34748 * 16 14 13 24 24 C 1.54806 * 104.19114 * 242.60923 * 23 16 14 25 25 C 1.55004 * 102.09353 * 20.88031 * 24 23 16 26 26 O 1.43748 * 109.87519 * 46.52095 * 16 14 13 27 27 C 1.47075 * 118.26295 * 51.13668 * 13 12 11 28 28 C 1.46900 * 110.99594 * 294.29827 * 10 9 7 29 29 H 0.96998 * 119.99800 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47108 * 59.99999 * 9 7 2 31 31 H 1.08999 * 109.46669 * 299.99467 * 9 7 2 32 32 H 1.09005 * 109.49188 * 307.21292 * 11 10 9 33 33 H 1.09002 * 109.49235 * 67.26059 * 11 10 9 34 34 H 1.08999 * 109.63092 * 65.88592 * 12 11 10 35 35 H 1.08995 * 109.63252 * 186.47255 * 12 11 10 36 36 H 1.08000 * 120.00176 * 359.97438 * 18 17 16 37 37 H 1.07997 * 120.00288 * 180.20628 * 19 18 17 38 38 H 1.08002 * 119.99599 * 179.78857 * 20 19 18 39 39 H 1.07999 * 119.99786 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00484 * 359.97438 * 22 17 16 41 41 H 1.09004 * 110.48561 * 1.28743 * 23 16 14 42 42 H 1.09001 * 110.48614 * 123.92773 * 23 16 14 43 43 H 1.09004 * 110.90738 * 262.68224 * 24 23 16 44 44 H 1.08998 * 110.94347 * 139.08937 * 24 23 16 45 45 H 1.08995 * 110.61904 * 204.47578 * 25 24 23 46 46 H 1.08993 * 110.61517 * 81.47799 * 25 24 23 47 47 H 1.08995 * 109.63595 * 189.12625 * 27 13 12 48 48 H 1.09000 * 109.62705 * 68.54531 * 27 13 12 49 49 H 1.08998 * 109.49631 * 292.70570 * 28 10 9 50 50 H 1.08994 * 109.49436 * 52.76676 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 1.5209 -4.8937 0.2356 12 6 2.5628 -6.0039 0.4084 13 7 3.4619 -5.9860 -0.7555 14 6 3.7133 -7.1120 -1.4522 15 8 3.2505 -8.1702 -1.0821 16 6 4.5694 -7.0562 -2.6912 17 6 3.7899 -6.4421 -3.8253 18 6 2.5465 -6.9444 -4.1610 19 6 1.8297 -6.3785 -5.1987 20 6 2.3600 -5.3160 -5.9064 21 6 3.6054 -4.8168 -5.5738 22 6 4.3205 -5.3802 -4.5335 23 6 5.0287 -8.4761 -3.0752 24 6 6.5710 -8.4220 -2.9538 25 6 6.7806 -7.2036 -2.0189 26 8 5.7515 -6.2798 -2.4338 27 6 4.0796 -4.7075 -1.1387 28 6 2.9775 -3.6486 -1.2509 29 1 -0.4850 0.8400 0.0004 30 1 0.6246 -2.5564 -0.8919 31 1 0.6240 -2.5575 0.8881 32 1 0.9150 -4.8196 1.1387 33 1 0.8795 -5.1258 -0.6146 34 1 3.1379 -5.8281 1.3175 35 1 2.0618 -6.9700 0.4698 36 1 2.1340 -7.7771 -3.6107 37 1 0.8568 -6.7688 -5.4589 38 1 1.8014 -4.8762 -6.7193 39 1 4.0198 -3.9870 -6.1270 40 1 5.2936 -4.9903 -4.2738 41 1 4.6170 -9.2105 -2.3829 42 1 4.7344 -8.7085 -4.0987 43 1 7.0320 -8.2498 -3.9265 44 1 6.9581 -9.3332 -2.4978 45 1 7.7691 -6.7699 -2.1694 46 1 6.6410 -7.4909 -0.9769 47 1 4.5815 -4.8167 -2.1001 48 1 4.8004 -4.4066 -0.3784 49 1 2.3162 -3.8984 -2.0806 50 1 3.4277 -2.6716 -1.4260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650063164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:13 Heat of formation + Delta-G solvation = -50.294948 kcal Electronic energy + Delta-G solvation = -32163.862140 eV Core-core repulsion = 28155.571797 eV Total energy + Delta-G solvation = -4008.290343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.36435 -40.18032 -39.43311 -38.80042 -36.06453 -34.44771 -33.58982 -33.03355 -32.04159 -31.78750 -30.12460 -29.14826 -27.37493 -25.19434 -24.73396 -23.83309 -23.71985 -22.88855 -22.47326 -21.44894 -19.99907 -18.64176 -18.49223 -18.25952 -17.68718 -16.96045 -16.72452 -16.62077 -16.08815 -16.01581 -15.85349 -15.60848 -15.45486 -15.32996 -15.00987 -14.64173 -14.44741 -14.24258 -14.12131 -14.05149 -13.71989 -13.53631 -13.10864 -12.99490 -12.89312 -12.70643 -12.61650 -12.43848 -12.36195 -12.29197 -12.16949 -12.10648 -11.95434 -11.80395 -11.67862 -11.55190 -11.29480 -10.62079 -10.56220 -9.88344 -9.82247 -9.66208 -9.10017 -8.20211 -6.30625 0.29300 0.44388 1.34741 1.43015 1.44451 1.56122 1.85102 2.41212 2.52575 2.80831 3.11949 3.20018 3.29135 3.46528 3.59861 3.91367 3.95706 3.99341 4.02086 4.08810 4.11384 4.18940 4.25791 4.27160 4.35645 4.39014 4.54975 4.57909 4.63730 4.67644 4.69003 4.79210 4.84646 4.89854 4.93862 4.94939 4.99946 5.00223 5.10098 5.13667 5.15536 5.20893 5.38383 5.46123 5.51401 5.58565 5.63367 5.74741 6.01230 6.02974 6.18112 6.34244 6.53446 6.84494 6.93283 7.39287 8.91330 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012185 B = 0.003632 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.418589 B = 7708.231549 C = 8315.958533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.068 0.932 9 C 0.209 3.791 10 N -0.536 5.536 11 C 0.045 3.955 12 C 0.123 3.877 13 N -0.595 5.595 14 C 0.508 3.492 15 O -0.569 6.569 16 C 0.141 3.859 17 C -0.093 4.093 18 C -0.125 4.125 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.135 4.135 24 C -0.141 4.141 25 C 0.034 3.966 26 O -0.359 6.359 27 C 0.123 3.877 28 C 0.058 3.942 29 H 0.264 0.736 30 H -0.043 1.043 31 H 0.006 0.994 32 H 0.085 0.915 33 H 0.012 0.988 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.126 0.874 46 H 0.055 0.945 47 H 0.120 0.880 48 H 0.078 0.922 49 H 0.007 0.993 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.811 -15.965 -10.985 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.083 3.917 10 N -0.260 5.260 11 C -0.084 4.084 12 C 0.000 4.000 13 N -0.326 5.326 14 C 0.296 3.704 15 O -0.450 6.450 16 C 0.098 3.902 17 C -0.093 4.093 18 C -0.143 4.143 19 C -0.144 4.144 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.117 4.117 23 C -0.173 4.173 24 C -0.178 4.178 25 C -0.042 4.042 26 O -0.278 6.278 27 C 0.001 3.999 28 C -0.071 4.071 29 H 0.073 0.927 30 H -0.025 1.025 31 H 0.024 0.976 32 H 0.103 0.897 33 H 0.030 0.970 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.144 0.856 46 H 0.073 0.927 47 H 0.138 0.862 48 H 0.096 0.904 49 H 0.025 0.975 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.774 -16.095 -10.401 23.600 hybrid contribution -1.211 0.686 -0.260 1.416 sum 12.563 -15.410 -10.662 22.560 Atomic orbital electron populations 1.70097 1.07876 1.27923 1.51756 1.25921 0.95678 1.03248 0.94697 0.85372 0.78635 0.78098 0.78481 1.19703 1.20991 1.18601 1.21427 0.93733 0.90673 1.50107 0.91423 1.19375 0.90048 0.88927 0.93332 1.62042 1.26904 1.02543 1.34561 1.22419 0.95507 0.90108 1.00402 1.21698 0.91396 0.98440 0.88434 1.48221 1.45686 1.09149 1.29567 1.21273 0.81405 0.82944 0.84784 1.90623 1.54463 1.29922 1.69960 1.20839 0.86148 0.93744 0.89429 1.19427 0.95160 0.98169 0.96562 1.20983 0.94461 1.00504 0.98345 1.21328 1.00326 0.97061 0.95715 1.21537 0.96082 0.96101 1.00106 1.21509 0.94985 1.00149 0.97390 1.21162 1.00951 0.94597 0.95005 1.22957 0.97539 0.93132 1.03699 1.23143 0.93547 0.99558 1.01595 1.23911 0.92685 0.89820 0.97778 1.88912 1.20065 1.31350 1.87443 1.22156 0.94130 0.80539 1.03111 1.22295 0.95436 0.99795 0.89585 0.92715 1.02516 0.97588 0.89715 0.96992 0.89806 0.89025 0.87111 0.84534 0.83870 0.83590 0.83973 0.89684 0.89146 0.88664 0.88238 0.85597 0.92692 0.86246 0.90405 0.97485 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.36 13.29 21.45 0.28 -56.07 16 2 C 0.00 0.14 5.46 84.65 0.46 0.61 16 3 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.52 -29.22 8.41 25.60 0.22 -29.00 16 8 H 0.07 3.67 7.12 -2.91 -0.02 3.65 16 9 C 0.21 11.29 4.72 85.56 0.40 11.70 16 10 N -0.54 -23.56 4.62 -899.80 -4.16 -27.72 16 11 C 0.04 1.71 5.62 86.38 0.49 2.20 16 12 C 0.12 4.02 6.59 86.35 0.57 4.59 16 13 N -0.60 -19.16 3.01 -817.91 -2.46 -21.62 16 14 C 0.51 15.73 6.00 87.66 0.53 16.26 16 15 O -0.57 -19.97 14.81 -3.05 -0.05 -20.02 16 16 C 0.14 3.48 0.53 -11.91 -0.01 3.48 16 17 C -0.09 -2.34 3.93 -19.87 -0.08 -2.42 16 18 C -0.12 -3.27 9.00 22.27 0.20 -3.07 16 19 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 20 C -0.12 -2.57 10.05 22.27 0.22 -2.34 16 21 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 22 C -0.10 -2.28 8.42 22.27 0.19 -2.09 16 23 C -0.14 -2.74 6.05 31.58 0.19 -2.55 16 24 C -0.14 -1.94 7.15 31.90 0.23 -1.71 16 25 C 0.03 0.54 7.66 72.67 0.56 1.09 16 26 O -0.36 -7.88 6.56 -148.98 -0.98 -8.86 16 27 C 0.12 3.90 5.73 86.35 0.49 4.39 16 28 C 0.06 2.29 5.46 86.39 0.47 2.76 16 29 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 30 H -0.04 -2.55 8.12 -2.39 -0.02 -2.57 16 31 H 0.01 0.35 7.97 -2.39 -0.02 0.33 16 32 H 0.08 3.14 7.99 -2.38 -0.02 3.12 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.09 2.92 7.09 -2.39 -0.02 2.91 16 36 H 0.11 3.06 7.86 -2.91 -0.02 3.04 16 37 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.14 2.94 6.97 -2.91 -0.02 2.92 16 41 H 0.08 2.00 6.54 -2.39 -0.02 1.99 16 42 H 0.09 1.70 7.63 -2.39 -0.02 1.69 16 43 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.12 3.42 3.36 -2.39 -0.01 3.41 16 48 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 50 H 0.08 3.47 6.67 -2.39 -0.02 3.45 16 Total: -1.00 -69.03 388.93 1.17 -67.86 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.93 Total: 22.01 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 5.58 Total: -1.22 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -6.34 Total: -105.42 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.02 Total: -28.88 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -69.03 1.17 -67.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650063164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.563 kcal (2) G-P(sol) polarization free energy of solvation -69.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds