Wall clock time and date at job start Wed Apr 1 2020 03:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00501 * 2 1 4 4 H 1.48503 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47276 * 59.99801 * 3 2 1 6 6 H 1.48496 * 109.47132 * 300.00094 * 3 2 1 7 7 C 1.38820 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99875 * 156.01271 * 7 2 1 9 9 N 1.36937 * 119.99784 * 336.01714 * 7 2 1 10 10 C 1.46931 * 120.62993 * 146.82137 * 9 7 2 11 11 C 1.53186 * 108.77741 * 126.36647 * 10 9 7 12 12 C 1.53036 * 109.31215 * 54.63465 * 11 10 9 13 13 C 1.53035 * 109.54058 * 298.63305 * 12 11 10 14 14 H 1.08997 * 109.50200 * 301.41583 * 13 12 11 15 15 N 1.46504 * 109.50178 * 181.31841 * 13 12 11 16 16 C 1.34777 * 120.00324 * 155.00263 * 15 13 12 17 17 O 1.21286 * 119.99578 * 359.97438 * 16 15 13 18 18 C 1.50694 * 120.00172 * 180.02562 * 16 15 13 19 19 O 1.42893 * 109.47182 * 179.97438 * 18 16 15 20 20 C 1.42903 * 114.00008 * 179.97438 * 19 18 16 21 21 C 1.50700 * 109.47338 * 180.02562 * 20 19 18 22 22 C 1.32564 * 120.00341 * 134.27283 * 21 20 19 23 23 C 1.47809 * 119.99800 * 8.38786 * 22 21 20 24 24 C 1.39536 * 120.14037 * 215.43445 * 23 22 21 25 25 C 1.37977 * 119.85657 * 179.76221 * 24 23 22 26 26 C 1.38346 * 120.14055 * 0.49151 * 25 24 23 27 27 C 1.38345 * 120.28555 * 359.76239 * 26 25 24 28 28 C 1.37968 * 120.14268 * 0.02562 * 27 26 25 29 29 C 1.46929 * 120.63325 * 326.54009 * 9 7 2 30 30 H 0.96991 * 120.00667 * 176.01108 * 1 2 3 31 31 H 1.08999 * 109.58394 * 246.15875 * 10 9 7 32 32 H 1.09003 * 109.58312 * 6.43479 * 10 9 7 33 33 H 1.08997 * 109.49847 * 174.59007 * 11 10 9 34 34 H 1.09006 * 109.49809 * 294.68537 * 11 10 9 35 35 H 1.08999 * 109.46076 * 58.65794 * 12 11 10 36 36 H 1.09010 * 109.46082 * 178.61643 * 12 11 10 37 37 H 0.97001 * 119.99390 * 335.00292 * 15 13 12 38 38 H 1.09009 * 109.47069 * 299.99909 * 18 16 15 39 39 H 1.08999 * 109.47309 * 59.99815 * 18 16 15 40 40 H 1.09006 * 109.47036 * 300.00058 * 20 19 18 41 41 H 1.09001 * 109.47135 * 59.99927 * 20 19 18 42 42 H 1.08005 * 119.99598 * 314.27341 * 21 20 19 43 43 H 1.07996 * 119.99754 * 188.38488 * 22 21 20 44 44 H 1.08002 * 120.07084 * 359.97438 * 24 23 22 45 45 H 1.07999 * 119.92842 * 180.23268 * 25 24 23 46 46 H 1.08000 * 119.85581 * 179.73613 * 26 25 24 47 47 H 1.07997 * 119.92892 * 179.97438 * 27 26 25 48 48 H 1.08006 * 120.07663 * 179.97438 * 28 27 26 49 49 H 1.08995 * 109.58509 * 353.41489 * 29 9 7 50 50 H 1.08989 * 109.58514 * 113.84646 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8916 2.3964 1.2125 6 1 1.8917 2.3963 -1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0202 -1.2429 -0.3797 9 7 1.4141 -2.3367 0.4831 10 6 1.7214 -3.6499 -0.1000 11 6 2.1566 -4.5979 1.0218 12 6 1.0768 -4.6287 2.1058 13 6 0.9049 -3.2277 2.6970 14 1 1.8542 -2.8886 3.1116 15 7 -0.1066 -3.2645 3.7562 16 6 -0.0880 -2.3417 4.7383 17 8 0.7666 -1.4810 4.7455 18 6 -1.1281 -2.3800 5.8281 19 8 -0.8980 -1.3076 6.7439 20 6 -1.8348 -1.2526 7.8217 21 6 -1.4995 -0.0900 8.7200 22 6 -2.4595 0.7225 9.1389 23 6 -3.8759 0.3873 8.8817 24 6 -4.7974 1.3993 8.6101 25 6 -6.1171 1.0793 8.3660 26 6 -6.5296 -0.2408 8.4001 27 6 -5.6221 -1.2484 8.6739 28 6 -4.2987 -0.9421 8.9155 29 6 0.4596 -2.2647 1.5978 30 1 -0.4851 -0.8379 -0.0584 31 1 0.8338 -4.0482 -0.5914 32 1 2.5267 -3.5472 -0.8275 33 1 2.2951 -5.6006 0.6175 34 1 3.0943 -4.2460 1.4523 35 1 0.1335 -4.9570 1.6694 36 1 1.3728 -5.3214 2.8937 37 1 -0.7898 -3.9531 3.7505 38 1 -2.1198 -2.2758 5.3877 39 1 -1.0640 -3.3302 6.3583 40 1 -2.8410 -1.1243 7.4224 41 1 -1.7861 -2.1795 8.3931 42 1 -0.4769 0.0813 9.0225 43 1 -2.2067 1.6294 9.6681 44 1 -4.4775 2.4306 8.5876 45 1 -6.8305 1.8614 8.1519 46 1 -7.5646 -0.4857 8.2125 47 1 -5.9504 -2.2770 8.6995 48 1 -3.5912 -1.7296 9.1296 49 1 0.4344 -1.2489 1.9921 50 1 -0.5329 -2.5479 1.2478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660829425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:57 Heat of formation + Delta-G solvation = -16.699046 kcal Electronic energy + Delta-G solvation = -29380.895916 eV Core-core repulsion = 25374.062400 eV Total energy + Delta-G solvation = -4006.833516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.84447 -39.53407 -38.01187 -37.11916 -34.87201 -34.23011 -32.82689 -31.35829 -30.35291 -29.89171 -29.49442 -27.65202 -25.93803 -25.04880 -22.81800 -22.61775 -22.25356 -21.96835 -20.22371 -19.62099 -19.29097 -17.47776 -17.29154 -16.76325 -16.56484 -16.41830 -15.83132 -15.42247 -15.01688 -14.83752 -14.44164 -14.33347 -14.10290 -13.71851 -13.71043 -13.54346 -13.39626 -13.25585 -12.89772 -12.65278 -12.47579 -12.25856 -12.21538 -11.95196 -11.82421 -11.37066 -11.15074 -10.98539 -10.87887 -10.59242 -10.34334 -10.31846 -10.22981 -10.01192 -9.84448 -9.72215 -9.41864 -9.29434 -9.16663 -8.64539 -8.53924 -8.27101 -6.78354 -6.01433 -3.23175 0.70340 1.10473 2.01057 2.93711 3.05526 3.55259 3.57416 3.65106 3.75378 4.05553 4.45952 4.56476 4.66033 4.66803 4.78430 4.80605 4.93950 5.00242 5.06890 5.07700 5.15771 5.19400 5.24138 5.25612 5.36354 5.41417 5.50619 5.58234 5.61461 5.64876 5.75304 5.95816 6.03761 6.04725 6.08408 6.20000 6.21775 6.30833 6.32531 6.36059 6.45403 6.56817 6.68935 6.70628 6.77620 6.82479 6.95856 7.05774 7.28078 7.82778 8.13549 8.57965 8.66073 9.17308 9.89960 10.35307 11.26953 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.002349 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.544794 B =11916.691228 C =13033.038863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.017 4.017 3 Si 1.070 2.930 4 H -0.291 1.291 5 H -0.288 1.288 6 H -0.294 1.294 7 C -0.356 4.356 8 H 0.054 0.946 9 N -0.594 5.594 10 C 0.144 3.856 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.085 0.915 15 N -0.723 5.723 16 C 0.508 3.492 17 O -0.509 6.509 18 C 0.047 3.953 19 O -0.357 6.357 20 C 0.077 3.923 21 C -0.129 4.129 22 C -0.117 4.117 23 C -0.059 4.059 24 C -0.106 4.106 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.117 4.117 29 C 0.149 3.851 30 H 0.268 0.732 31 H 0.016 0.984 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.393 0.607 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.125 0.875 49 H 0.079 0.921 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.465 -7.471 19.423 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.220 4.220 3 Si 0.900 3.100 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.221 1.221 7 C -0.485 4.485 8 H 0.071 0.929 9 N -0.318 5.318 10 C 0.018 3.982 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.103 0.897 15 N -0.376 5.376 16 C 0.292 3.708 17 O -0.382 6.382 18 C -0.033 4.033 19 O -0.275 6.275 20 C 0.002 3.998 21 C -0.147 4.147 22 C -0.135 4.135 23 C -0.059 4.059 24 C -0.124 4.124 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.135 4.135 29 C 0.022 3.978 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.226 0.774 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.143 0.857 49 H 0.097 0.903 50 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -10.823 -5.006 19.434 22.801 hybrid contribution -0.451 -2.269 -0.008 2.313 sum -11.274 -7.274 19.426 23.609 Atomic orbital electron populations 1.70727 1.06708 1.30223 1.47233 1.25965 0.96543 1.01759 0.97718 0.83468 0.74472 0.75433 0.76654 1.21705 1.21442 1.22073 1.19911 0.96974 0.88063 1.43552 0.92858 1.44005 1.51746 1.02484 1.33548 1.20971 0.97656 0.86375 0.93225 1.21999 0.98316 0.99390 0.97405 1.21665 0.99754 0.95702 0.98178 1.21744 0.91877 0.96693 0.87721 0.89687 1.45992 1.33374 1.31807 1.26443 1.20123 0.86035 0.82128 0.82507 1.90784 1.37188 1.34768 1.75473 1.22204 0.98387 0.91449 0.91280 1.88056 1.53011 1.49452 1.36998 1.22013 0.92913 0.96937 0.87986 1.23042 0.99966 0.95428 0.96292 1.21672 0.90668 0.98889 1.02245 1.19139 0.93599 0.93301 0.99835 1.21316 0.92974 0.99121 0.99032 1.21135 0.95979 0.96640 0.99986 1.21234 0.99712 0.93025 0.99884 1.21096 0.93250 0.99451 1.00172 1.21468 0.96129 0.95640 1.00228 1.21153 0.91393 0.98742 0.86546 0.92125 0.96602 0.92433 0.92475 0.92013 0.92218 0.92789 0.77435 0.90399 0.90662 0.91293 0.92340 0.85472 0.85320 0.85689 0.85874 0.86059 0.85893 0.85675 0.90269 0.96649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 12.68 55.49 0.70 -27.75 16 2 C -0.02 -0.49 4.68 -17.43 -0.08 -0.57 16 3 Si 1.07 27.03 29.98 -169.99 -5.10 21.93 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.36 -10.36 9.43 -15.06 -0.14 -10.50 16 8 H 0.05 1.56 7.94 -52.49 -0.42 1.14 16 9 N -0.59 -15.36 2.78 -172.58 -0.48 -15.84 16 10 C 0.14 3.04 6.52 -3.71 -0.02 3.02 16 11 C -0.13 -2.24 6.08 -26.62 -0.16 -2.40 16 12 C -0.11 -1.82 5.36 -26.69 -0.14 -1.96 16 13 C 0.12 2.42 2.59 -68.03 -0.18 2.25 16 14 H 0.09 1.91 7.58 -51.93 -0.39 1.52 16 15 N -0.72 -11.48 5.08 -53.90 -0.27 -11.76 16 16 C 0.51 9.07 7.87 -10.99 -0.09 8.98 16 17 O -0.51 -12.04 16.16 -14.36 -0.23 -12.27 16 18 C 0.05 0.61 6.42 36.00 0.23 0.84 16 19 O -0.36 -5.47 9.86 -55.14 -0.54 -6.01 16 20 C 0.08 0.85 4.55 36.01 0.16 1.01 16 21 C -0.13 -1.36 9.83 -36.22 -0.36 -1.72 16 22 C -0.12 -1.11 9.80 -37.58 -0.37 -1.48 16 23 C -0.06 -0.57 5.16 -105.01 -0.54 -1.12 16 24 C -0.11 -0.99 9.79 -39.19 -0.38 -1.37 16 25 C -0.12 -1.01 10.03 -39.64 -0.40 -1.40 16 26 C -0.12 -0.96 10.04 -39.50 -0.40 -1.36 16 27 C -0.12 -0.98 10.03 -39.64 -0.40 -1.37 16 28 C -0.12 -1.03 7.40 -39.20 -0.29 -1.32 16 29 C 0.15 3.62 4.30 -3.93 -0.02 3.61 16 30 H 0.27 8.39 6.80 -40.82 -0.28 8.11 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.39 4.58 8.60 -40.82 -0.35 4.23 16 38 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.74 5.22 -51.93 -0.27 0.47 16 41 H 0.06 0.50 7.62 -51.93 -0.40 0.10 16 42 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.13 0.93 5.93 -52.48 -0.31 0.62 16 49 H 0.08 2.30 6.70 -51.93 -0.35 1.95 16 50 H 0.02 0.38 7.84 -51.94 -0.41 -0.03 16 LS Contribution 405.26 15.07 6.11 6.11 Total: -1.00 -37.20 405.26 -11.26 -48.46 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.88 Total: 4.00 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.57 Total: -6.88 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.05 Total: -55.34 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.78 Total: -18.28 kcal Atomic # 14 Polarization: 27.03 SS G_CDS: -5.10 Total: 21.93 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.20 -11.26 -48.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660829425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.758 kcal (2) G-P(sol) polarization free energy of solvation -37.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds